diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
deleted file mode 100644
index 29e9a186d..000000000
--- a/.github/workflows/ci.yml
+++ /dev/null
@@ -1,70 +0,0 @@
-name: unit-tests
-
-on:
-  workflow_dispatch:
-  push:
-    branches:
-      - main
-      - dev
-  pull_request:
-    branches:
-      - main
-      - dev
-      - breaking-improvments
-
-jobs:
-  unit-tests:
-    runs-on: ubuntu-20.04
-    container:
-      image: hopkinsidd/flepimop:latest-dev
-      options: --user root
-    steps:
-      - name: Checkout
-        uses: actions/checkout@v3
-        with:
-          lfs: true
-      - name: Set up Rprofile
-        run: |
-          cp build/docker/Docker.Rprofile $HOME/.Rprofile
-          cp /home/app/.bashrc $HOME/.bashrc
-        shell: bash
-      - name: Install the gempyor package
-        run: |
-          source /var/python/3.10/virtualenv/bin/activate
-          python -m pip install --upgrade pip
-          python -m pip install "flepimop/gempyor_pkg[test]"
-        shell: bash
-      - name: Install local R packages
-        run: Rscript build/local_install.R
-        shell: bash
-      - name: Run gempyor tests
-        run: |
-          source /var/python/3.10/virtualenv/bin/activate
-          cd flepimop/gempyor_pkg
-          pytest -s
-        shell: bash
-      - name: Run gempyor-cli integration tests from examples
-        run: |
-          source /var/python/3.10/virtualenv/bin/activate
-          cd examples
-          pytest -s
-        shell: bash
-      - name: Run flepicommon tests
-        run: |
-          setwd("flepimop/R_packages/flepicommon")
-          devtools::test(stop_on_failure=TRUE)
-        shell: Rscript {0}
-      - name: Run inference tests
-        run: |
-          setwd("flepimop/R_packages/inference")
-          devtools::test(stop_on_failure=TRUE)
-        shell: Rscript {0}
-#      - name: Run integration tests
-#        env:
-#          CENSUS_API_KEY: ${{ secrets.CENSUS_API_KEY }}
-#        run: |
-#          Rscript build/local_install.R
-#          cd test
-#          source /var/python/3.10/virtualenv/bin/activate
-#          pytest run_tests.py
-#        shell: bash
diff --git a/.github/workflows/flepicommon-ci.yml b/.github/workflows/flepicommon-ci.yml
new file mode 100644
index 000000000..9f8abc089
--- /dev/null
+++ b/.github/workflows/flepicommon-ci.yml
@@ -0,0 +1,79 @@
+name: flepicommon-ci
+
+on:
+  workflow_dispatch:
+  push:
+    paths:
+      - flepimop/R_packages/flepicommon/**/*
+    branches:
+      - main
+  pull_request:
+    paths:
+      - flepimop/R_packages/flepicommon/**/*
+    branches:
+      - main
+
+jobs:
+  tests:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        R-version: ["4.3.3"]
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+        with:
+          lfs: true
+          sparse-checkout: |
+            *
+            !documentation/
+          sparse-checkout-cone-mode: false
+      - name: Setup R
+        uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.R-version }}
+          update-rtools: true
+      - name: Install System Dependencies
+        run: sudo apt install libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev libtiff5-dev libudunits2-dev libgdal-dev libgeos-dev libproj-dev
+      - name: Determine R Library Location
+        run: |
+          R_LIBPATH=$( R -s -e "cat(.libPaths()[1L])" | xargs )
+          echo "R_LIBPATH=$R_LIBPATH" >> $GITHUB_ENV
+          R_LIBPATH_CKSUM=$( echo "$R_LIBPATH" | cksum | cut -d ' ' -f 1 )
+          echo "R_LIBPATH_CKSUM=$R_LIBPATH_CKSUM" >> $GITHUB_ENV
+          CACHE_DATE=$( date -d "last Sunday" +%Y%m%d )
+          echo "CACHE_DATE=$CACHE_DATE" >> $GITHUB_ENV
+      - name: R Library Cache
+        uses: actions/cache@v4
+        with:
+          key: flepicommon-rlibs-${{ runner.os }}-${{ matrix.R-version }}-${{ hashFiles('flepimop/R_packages/flepicommon/DESCRIPTION', 'flepimop/R_packages/flepicommon/NAMESPACE') }}-${{ env.R_LIBPATH_CKSUM }}-${{ env.CACHE_DATE }}
+          path: ${{ env.R_LIBPATH }}
+      - name: Install R Dependencies
+        if: steps.r-library-cache.outputs.cache-hit != 'true'
+        run: |
+          install.packages(
+            "devtools",
+            repos = "https://cloud.r-project.org",
+          )
+          library(devtools)
+          devtools::install_deps(
+            pkg = "flepimop/R_packages/flepicommon",
+            dependencies = TRUE
+          )
+          install.packages("covidcast", repos = "https://cloud.r-project.org")
+        shell: Rscript {0}
+      - name: Install The flepicommon Package
+        run: |
+          devtools::install(
+            pkg = "flepimop/R_packages/flepicommon",
+            args = c(getOption("devtools.install.args"), "--install-tests"),
+            quick = TRUE,
+            dependencies = TRUE,
+            force = TRUE
+          )
+        shell: Rscript {0}
+      - name: Run Tests
+        run: |
+          library(testthat)
+          test_package("flepicommon")
+        shell: Rscript {0}
diff --git a/.github/workflows/gempyor-ci.yml b/.github/workflows/gempyor-ci.yml
new file mode 100644
index 000000000..e2637f1af
--- /dev/null
+++ b/.github/workflows/gempyor-ci.yml
@@ -0,0 +1,51 @@
+name: gempyor-ci
+
+on:
+  workflow_dispatch:
+  push:
+    paths:
+      - examples/**/*
+      - flepimop/gempyor_pkg/**/*
+    branches:
+      - main
+  pull_request:
+    paths:
+      - examples/**/*
+      - flepimop/gempyor_pkg/**/*
+    branches:
+      - main
+
+jobs:
+  tests:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.10", "3.11"]
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+        with:
+          lfs: true
+          sparse-checkout: |
+            *
+            !documentation/
+          sparse-checkout-cone-mode: false
+      - name: Setup Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install gempyor
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install "flepimop/gempyor_pkg[test]"
+        shell: bash
+      - name: Run gempyor tests
+        run: |
+          cd flepimop/gempyor_pkg
+          pytest --exitfirst
+        shell: bash
+      - name: Run gempyor-cli integration tests from examples
+        run: |
+          cd examples
+          pytest --exitfirst
+        shell: bash
diff --git a/.github/workflows/inference-ci.yml b/.github/workflows/inference-ci.yml
new file mode 100644
index 000000000..d80a2e735
--- /dev/null
+++ b/.github/workflows/inference-ci.yml
@@ -0,0 +1,112 @@
+name: inference-ci
+
+on:
+  workflow_dispatch:
+  workflow_run:
+    workflows: ['flepicommon-ci', 'gempyor-ci']
+    types:
+      - completed
+  push:
+    paths:
+      - flepimop/R_packages/inference/**/*
+    branches:
+      - main
+  pull_request:
+    paths:
+      - flepimop/R_packages/inference/**/*
+    branches:
+      - main
+
+jobs:
+  tests:
+    runs-on: ubuntu-latest
+    if: ${{ github.event_name != 'workflow_run' || github.event.workflow_run.conclusion == 'success' }}
+    strategy:
+      matrix:
+        R-version: ["4.3.3"]
+        python-version: ["3.10", "3.11"]
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+        with:
+          lfs: true
+          sparse-checkout: |
+            *
+            !documentation/
+          sparse-checkout-cone-mode: false
+      - name: Setup Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install gempyor
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install "flepimop/gempyor_pkg[test]"
+        shell: bash
+      - name: Setup R
+        uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.R-version }}
+          update-rtools: true
+      - name: Install System Dependencies
+        run: sudo apt install libcurl4-openssl-dev libharfbuzz-dev libfribidi-dev libtiff5-dev libudunits2-dev libgdal-dev libgeos-dev libproj-dev
+      - name: Determine R Library Location
+        run: |
+          R_LIBPATH=$( R -s -e "cat(.libPaths()[1L])" | xargs )
+          echo "R_LIBPATH=$R_LIBPATH" >> $GITHUB_ENV
+          R_LIBPATH_CKSUM=$( echo "$R_LIBPATH" | cksum | cut -d ' ' -f 1 )
+          echo "R_LIBPATH_CKSUM=$R_LIBPATH_CKSUM" >> $GITHUB_ENV
+          CACHE_DATE=$( date -d "last Sunday" +%Y%m%d )
+          echo "CACHE_DATE=$CACHE_DATE" >> $GITHUB_ENV
+      - name: R Library Cache
+        uses: actions/cache@v4
+        with:
+          key: inference-rlibs-${{ runner.os }}-${{ matrix.R-version }}-${{ hashFiles('flepimop/R_packages/flepicommon/DESCRIPTION', 'flepimop/R_packages/flepicommon/NAMESPACE', 'flepimop/R_packages/inference/DESCRIPTION', 'flepimop/R_packages/inference/NAMESPACE') }}-${{ env.R_LIBPATH_CKSUM }}-${{ env.CACHE_DATE }}
+          path: ${{ env.R_LIBPATH }}
+      - name: Install R Dependencies For flepicommon
+        if: steps.r-library-cache.outputs.cache-hit != 'true'
+        run: |
+          install.packages(
+            "devtools",
+            repos = "https://cloud.r-project.org",
+          )
+          library(devtools)
+          devtools::install_deps(
+            pkg = "flepimop/R_packages/flepicommon",
+            dependencies = TRUE
+          )
+          install.packages("covidcast", repos = "https://cloud.r-project.org")
+        shell: Rscript {0}
+      - name: Install The flepicommon Package
+        run: |
+          devtools::install(
+            pkg = "flepimop/R_packages/flepicommon",
+            quick = TRUE,
+            dependencies = TRUE,
+            force = TRUE
+          )
+        shell: Rscript {0}
+      - name: Install R Dependencies For inference
+        if: steps.r-library-cache.outputs.cache-hit != 'true'
+        run: |
+          devtools::install_deps(
+            pkg = "flepimop/R_packages/inference",
+            dependencies = TRUE
+          )
+          install.packages("covidcast", repos = "https://cloud.r-project.org")
+        shell: Rscript {0}
+      - name: Install The inference Package
+        run: |
+          devtools::install(
+            pkg = "flepimop/R_packages/inference",
+            args = c(getOption("devtools.install.args"), "--install-tests"),
+            quick = TRUE,
+            dependencies = TRUE,
+            force = TRUE
+          )
+        shell: Rscript {0}
+      - name: Run Tests
+        run: |
+          library(testthat)
+          test_package("inference")
+        shell: Rscript {0}