Updated psi-ms.obo to include the Kojak algorithm and its results. (#332

)

psi-ms.obo

@@ -1,7 +1,7 @@
 format-version: 1.2
-data-version: 4.1.175
-date: 25:08:2024 07:15
-saved-by: Joshua Klein
+data-version: 4.1.176
+date: 17:09:2024 15:26
+saved-by: Michael Hoopmann
 auto-generated-by: OBO-Edit 2.3.1
 default-namespace: MS
 namespace-id-rule: * MS:$sequence(7,0,9999999)$
@@ -22548,6 +22548,85 @@ name: timsTOF Ultra 2
 def: "Bruker Daltonics timsTOF Ultra 2." [PSI:MS]
 is_a: MS:1003123 ! Bruker Daltonics timsTOF series
 
+[Term]
+id: MS:1003413
+name: Kojak
+def: "Kojak open-source crosslinked peptide sequence search engine developed at the Institute for Systems Biology." [PMID:36629399]
+is_a: MS:1001456 ! analysis software
+
+[Term]
+id: MS:1003414
+name: Kojak:score
+def: "The Kojak score for an individual peptide sequence, similar to Comet:xcorr." [PSI:PI]
+is_a: MS:1001143 ! PSM-level search engine specific statistic
+relationship: has_order MS:1002108 ! higher score better
+relationship: has_value_type xsd:double ! The allowed value-type for this CV term
+
+[Term]
+id: MS:1003415
+name: Kojak:expectation value
+def: "The Kojak expectation value for an individual peptide sequence." [PSI:PI]
+is_a: MS:1001153 ! search engine specific score
+is_a: MS:1001143 ! PSM-level search engine specific statistic
+relationship: has_order MS:1002109 ! lower score better
+relationship: has_value_type xsd:double ! The allowed value-type for this CV term
+
+[Term]
+id: MS:1003416
+name: Kojak:matched ions
+def: "The number of matched ions for an individual peptide sequence in a Kojak result." [PSI:PI]
+is_a: MS:1001143 ! PSM-level search engine specific statistic
+relationship: has_order MS:1002108 ! higher score better
+relationship: has_value_type xsd:int ! The allowed value-type for this CV term
+
+[Term]
+id: MS:1003417
+name: Kojak:consecutive matched ions
+def: "The highest run of consecutive matched ions for an individual peptide sequence in a Kojak result." [PSI:PI]
+is_a: MS:1001143 ! PSM-level search engine specific statistic
+relationship: has_order MS:1002108 ! higher score better
+relationship: has_value_type xsd:int ! The allowed value-type for this CV term
+
+[Term]
+id: MS:1003418
+name: Kojak:delta score
+def: "The difference between the top Kojak score and the next best Kojak score for a PSM." [PSI:PI]
+is_a: MS:1001143 ! PSM-level search engine specific statistic
+relationship: has_order MS:1002108 ! higher score better
+relationship: has_value_type xsd:double ! The allowed value-type for this CV term
+
+[Term]
+id: MS:1003419
+name: Kojak:rank
+def: "The rank of an individual peptide from the first pass of the Kojak scoring algorithm. Applies only to sequences in a crosslinked result." [PSI:PI]
+is_a: MS:1001143 ! PSM-level search engine specific statistic
+relationship: has_order MS:1002109 ! lower score better
+relationship: has_value_type xsd:int ! The allowed value-type for this CV term
+
+[Term]
+id: MS:1003420
+name: Kojak:score xlink
+def: "The Kojak score for a crosslinked pair of peptide sequences, similar to Comet:xcorr." [PSI:PI]
+is_a: MS:1001143 ! PSM-level search engine specific statistic
+relationship: has_order MS:1002108 ! higher score better
+relationship: has_value_type xsd:double ! The allowed value-type for this CV term
+
+[Term]
+id: MS:1003421
+name: Kojak:expectation value xlink
+def: "The Kojak expectation value for a crosslinked pair of peptide sequences." [PSI:PI]
+is_a: MS:1001153 ! search engine specific score
+is_a: MS:1001143 ! PSM-level search engine specific statistic
+relationship: has_order MS:1002109 ! lower score better
+relationship: has_value_type xsd:double ! The allowed value-type for this CV term
+
+[Term]
+id: MS:1003422
+name: Kojak:matched ions xlink
+def: "The number of matched ions for a crosslinked pair of peptide sequences in a Kojak result." [PSI:PI]
+is_a: MS:1001143 ! PSM-level search engine specific statistic
+relationship: has_order MS:1002108 ! higher score better
+relationship: has_value_type xsd:int ! The allowed value-type for this CV term
 
 [Term]
 id: MS:4000000