From 3beeb48ec34a6c7cfc3bf1b446c4da355cddbe63 Mon Sep 17 00:00:00 2001 From: Joshua Klein Date: Wed, 6 Nov 2024 11:25:15 -0500 Subject: [PATCH] Update OWL file (#355) Co-authored-by: GitHub --- psi-ms.owl | 148 +++++++++++++++++++++++++++++++++++++++++++++++++---- 1 file changed, 138 insertions(+), 10 deletions(-) diff --git a/psi-ms.owl b/psi-ms.owl index 051d34a..bc3aa87 100644 --- a/psi-ms.owl +++ b/psi-ms.owl @@ -10,14 +10,13 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + * MS:$sequence(7,0,9999999)$ * PEFF:$sequence(7,0,9999999)$ - OBO-Edit 2.3.1 - 01:11:2024 10:15 + 31:10:2024 10:20 MS 1.2 - Yasset Perez-Riverol + Nithu Sara John For any queries contact psidev-ms-vocab@lists.sourceforge.net This work is licensed under the Creative Commons Attribution 4.0 International (CC BY 4.0) license. To view a copy of this license, visit https://creativecommons.org/licenses/by/4.0/ or send a letter to Creative Commons, 444 Castro Street, Suite 900, Mountain View, California, 94041, USA. @@ -36,6 +35,7 @@ creator: Mathias Walzer <walzer <-at-> ebi.ac.uk> creator: Matt Chambers <matt.chambers <-at-> vanderbilt.edu> creator: Nils Hoffmann < nils.hoffmann <-at-> cebitec.uni-bielefeld.de> + creator: Nithu Sara John <nithu <-at-> ebi.ac.uk> creator: Pierre-Alain Binz <pierre-alain.binz <-at-> chuv.ch> creator: Wout Bittremieux <wout.bittremieux <-at-> uantwerpen.be> creator: Yasset Perez-Riverol <yperez <-at-> ebi.ac.uk> @@ -135,12 +135,6 @@ - - - - - - @@ -71568,6 +71562,140 @@ + + + + + + A software to identify cross-linked peptides from LC-MS/MS spectra. + MS + MS:1003426 + xQuest/xProphet + + + + + A software to identify cross-linked peptides from LC-MS/MS spectra. + PMID:18327264 + + + + + + + + + + A software for spectral analysis and data interrogation in qualitative review of LC-MS and MS/MS data. + MS + MS:1003427 + PeakView + + + + + A software for spectral analysis and data interrogation in qualitative review of LC-MS and MS/MS data. + PMID:32275110 + + + + + + + + + + A software for interpreting protein quantification, interaction and post-translational modification data. + MS + MS:1003428 + Perseus + + + + + A software for interpreting protein quantification, interaction and post-translational modification data. + PMID:27348712 + + + + + + + + + + A computational platform for analyzing mass spectrometry-based proteomics data. + MS + MS:1003429 + FragPipe + + + + + A computational platform for analyzing mass spectrometry-based proteomics data. + PMID:37878603 + + + + + + + + + + A software for LC-MS data management and analysis. + MS + MS:1003430 + OpenMS + + + + + A software for LC-MS data management and analysis. + PMID:38366242 + + + + + + + + + + A tool for the analysis of chemically cross-linked proteins using mass spectrometry. + MS + MS:1003431 + pLink + + + + + A tool for the analysis of chemically cross-linked proteins using mass spectrometry. + PMID:22772728 + + + + + + + + + + + Upgraded version of pLink tool, provides a graphical user interface and faster with newly designed index structure. + MS + MS:1003432 + pLink2 + + + + + Upgraded version of pLink tool, provides a graphical user interface and faster with newly designed index structure. + PMID:31363125 + + + +