Examples

mzTab 2.0 Example files

| --- | --- | | Name: | MTBLS263 example: Summary, Features, Evidence| | Description: | | | Link: | MTBLS263.mztab| | | | | Name: | LDA2 StandardMix (-) lipid position example: Summary, Features, Evidence| | Description: | Standard lipid mix, negative mode, lipid position level | | Link: | StandardMix_negative_exportPositionLevel.mztab.txt| | | | | Name: | LDA2 StandardMix (+) lipid position example: Summary, Features, Evidence| | Description: | Standard lipid mix, positive mode, lipid position level | | Link: | StandardMix_positive_exportPositionLevel.mztab.txt| | | | | Name: | LDA2 StandardMix (-) lipid species example: Summary, Features, Evidence| | Description: | Standard lipid mix, negative mode, lipid position level | | Link: | StandardMix_negative_exportSpeciesLevel.mztab.txt| | |
| Name: | LDA2 StandardMix (+) lLipid species example: Summary, Features, Evidence| | Description: | Standard lipid mix, positive mode, lipid species level | | Link: | StandardMix_positive_exportSpeciesLevel.mztab.txt| | |
| Name: | Lipidomics manual example: Summary, Features, Evidence| | Description: | Ceramides, positive mode, lipid species / subspecies level | | Link: | lipidomics-example.mzTab| | |

mzTab 1.0 Example files

| --- | --- | | Name: | SILAC example: Summary Quantification report | | Description: | (hand crafted) Report of a minimal "Summary Quantification report" SILAC experiment, quantification on 2 study variables (control/treatment) reported. | | Link: | SILAC_SQ.mzTab| | | | | Name: | iTRAQ example: Summary Quantification report | | Description: | (hand crafted) Report of a minimal Summary Quantification report" iTRAQ experiment, quantification on 4 study variables (t=0, t=1, t=2, t=3) reported, identifications reported.| | Link: | iTRAQ_SQI.mzTab | | | | | Name: | Label-free example: Summary Quantification report | | Description: | (hand crafted) Report of a minimal "Summary Quantification report" label free experiment, quantification on 2 study variables (control/treatment) reported, identifications reported.| | Link: | labelfree_SQI.mzTab | | | | | Name: | SILAC example: Complete Quantification report | | Description: | (hand crafted) Report of a minimal "Complete Quantification report" SILAC experiment, quantification on 2 study variables (control/treatment), 3+3 assays (replicates) reported, identifications reported. | | Link: | SILAC_CQI.mzTab| | | | | Name: | iTRAQ example: Complete Quantification report | | Description: | (hand crafted) Report of a minimal "Complete Quantification report" iTRAQ experiment, quantification on 4 study variables (t=0, t=1, t=2, t=3), 4*3 assays (3 replicate experiments) reported, identifications reported.| | Link: | iTRAQ_CQI.mzTab | | | | | Name: | Label-free example: Complete Quantification report | | Description: | (hand crafted) Report of a minimal "Complete Quantification report" label free experiment, quantification on 2 study variables (control/treatment), 3+3 assays (replicates) reported, identifications reported.| | Link: | labelfree_CQI.mzTab | | | | | Name: | PRIDE XML experiment 16649 | | Description: | file generated using the mztab-exporter (converted PRIDE experiment accession 16649) containing iTRAQ data. | | Link: | PRIDE_Exp_Complete_Ac_16649.xml-mztab.txt | | | | | Name: | PRIDE XML experiment 1643 | | Description: | file generated using the mztab-exporter (converted PRIDE experiment accession 1643) containing peptide and protein identification data. | | Link: | PRIDE_Exp_Complete_Ac_1643.xml-mztab.txt | | | | | Name: | Lipidomics example: complete quantification report | | Description: | File generated LDA mzTab export for small molecules. Report of a "Complete Quanification report" lipidomics experiment for the lipid class TG. Quantification on 3 study variables (HFD/FED/FAS), 6+6+6 assays (biological replicates) reported, identifications reported. The analysis contains lipid extracts from lipid droplets of mouse hepatocytes. Study variable (feeding conditions): HFD = high fat diet; FED = normal diet and fed before sacrifice; FAS = normal diet and fasted before sacrifice. | | Link: | lipidomics-HFD-LD-study-TG.mzTab | | | | | Name: | Lipidomics example 2 | | Description: | File generated LDA mzTab export for small molecules. Report of a "Complete Quanification report" lipidomics experiment for the lipid classes SM, PE, PC, LPC, DG, PS. Quantification on 3 study variables (HFD/FED/FAS), 6+6+6 assays (biological replicates) reported, identifications reported. The analysis contains lipid extracts from lipid droplets of mouse hepatocytes. Study variable (feeding conditions): HFD = high fat diet; FED = normal diet and fed before sacrifice; FAS = normal diet and fasted before sacrifice. | | Link: | lipicomics-HFD-LD-study-PL-DG-SM.mzTab | | | | | Name: | Cytidine | | Description: | Cytidine reference spectrum example. | | Link: | Cytidine.mzTab | | | | | Name: | MTBLS2 study from the MetaboLights reposiory | | Description: | mzTab generated from the metabolites identified from comparative LC/MS-based profiling of silver nitrate-treated Arabidopsis thaliana leaves of wild-type and cyp79B2 cyp79B3 double knockout plants.| | Link: | MTBLS2.mzTab |