From f087306c7620c2b2906f9028052dfb58f1a33599 Mon Sep 17 00:00:00 2001 From: Kwee Boon Brandon Seah Date: Wed, 8 Jan 2020 19:28:27 +0100 Subject: [PATCH] Bump version number to v3.3b2 in code and docs --- PhyloFlash.pm | 2 +- README.md | 11 +++++++---- docs/index.md | 6 +++--- docs/install.md | 4 ++-- 4 files changed, 13 insertions(+), 10 deletions(-) diff --git a/PhyloFlash.pm b/PhyloFlash.pm index 7917017..bf98ed4 100644 --- a/PhyloFlash.pm +++ b/PhyloFlash.pm @@ -28,7 +28,7 @@ This module contains helper functions shared by the phyloFlash scripts. =cut -our $VERSION = "3.3b1"; +our $VERSION = "3.3b2"; our @ISA = qw(Exporter); our @EXPORT = qw( $VERSION diff --git a/README.md b/README.md index 68325f1..f723728 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,6 @@ phyloFlash logo -# phyloFlash v3.3 beta 1 +# phyloFlash v3.3b2 [![GitHub (pre-)release](https://img.shields.io/github/release/HRGV/phyloflash/all.svg?label=Latest%20Version)]() [![Bioconda](https://img.shields.io/conda/vn/Bioconda/phyloFlash.svg)](https://bioconda.github.io/recipes/phyloflash/README.html) @@ -42,11 +42,11 @@ If you clone the repository directly off GitHub you might end up with a version ```bash # Download latest release -wget https://github.com/HRGV/phyloFlash/archive/pf3.3b1.tar.gz -tar -xzf pf3.3b1.tar.gz +wget https://github.com/HRGV/phyloFlash/archive/pf3.3b2.tar.gz +tar -xzf pf3.3b2.tar.gz # Check for dependencies and install them if necessary -cd phyloFlash-pf3.3b1 +cd phyloFlash-pf3.3b2 ./phyloFlash.pl -check_env ``` @@ -113,6 +113,9 @@ For further information **please refer to the [Manual](https://hrgv.github.io/ph ## Versions and changes +* v3.3 beta 2 + * New options to graphical comparison scripts, and other small bug fixes + * Fix bug due to change in SILVA project file naming convention with SILVA 138 onwards * v3.3 beta 1 * Add support for using SortMeRNA instead of BBmap for initial mapping step * Changes to how mapping data are hashed; process SAM file of initial mapping to fix known bugs with bitflag and read name reporting in BBmap and SortMeRNA diff --git a/docs/index.md b/docs/index.md index 27d95d6..12c4ec7 100644 --- a/docs/index.md +++ b/docs/index.md @@ -46,11 +46,11 @@ If you clone the repository directly off GitHub you might end up with a version ```bash # Download latest release -wget https://github.com/HRGV/phyloFlash/archive/pf3.3b1.tar.gz -tar -xzf pf3.3b1.tar.gz +wget https://github.com/HRGV/phyloFlash/archive/pf3.3b2.tar.gz +tar -xzf pf3.3b2.tar.gz # Check for dependencies and install them if necessary -cd phyloFlash-pf3.3b1 +cd phyloFlash-pf3.3b2 ./phyloFlash.pl -check_env ``` diff --git a/docs/install.md b/docs/install.md index efc4710..b8eccd2 100644 --- a/docs/install.md +++ b/docs/install.md @@ -52,8 +52,8 @@ If you clone the repository directly off GitHub you might end up with a version ```bash # Download latest release -wget https://github.com/HRGV/phyloFlash/archive/pf3.3b1.tar.gz -tar -xzf pf3.3b1.tar.gz +wget https://github.com/HRGV/phyloFlash/archive/pf3.3b2.tar.gz +tar -xzf pf3.3b2.tar.gz ``` Alternatively clone the latest development version with Git: