Merge pull request PGScatalog#278 from ens-lgil/feature/gwas_import_w…

…arning Change error to warning when a GCST ID can't be found in GWAS Catalog
HDRUK · Aug 24, 2023 · 1dfbad5 · 1dfbad5
2 parents 1a2b8a0 + e2a36da
commit 1dfbad5
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/curation/template_parser.py b/curation/template_parser.py
@@ -213,7 +213,7 @@ def extract_samples(self):
                             self.update_report(c_sample)
                             samples_list.append(c_sample)
                     else:
-                        self.report_error(spreadsheet_name, f'Can\'t fetch the GWAS information for the study {sample_data.data["source_GWAS_catalog"]}')
+                        self.report_warning(spreadsheet_name, f'Can\'t fetch the GWAS information for the study {sample_data.data["source_GWAS_catalog"]}')
                 else:
                     self.report_error(spreadsheet_name, f'Missing GWAS Study ID (GCST ID) to fetch the sample information')
             if len(samples_list) == 0: