DESCRIPTION

Package: DMCHMM
Type: Package
Title: Differentially Methylated CpG using Hidden Markov Model
Version: 1.3.1
Author: Farhad Shokoohi
Maintainer: Farhad Shokoohi <shokoohi@icloud.com>
Description: A pipeline for identifying differentially methylated CpG sites 
    using Hidden Markov Model in bisulfite sequencing data.
Depends: R (>= 3.5.0),
    SummarizedExperiment,
    methods,
    S4Vectors,
    BiocParallel,
    GenomicRanges,
    IRanges,
    fdrtool
Imports: utils,
    stats,
    grDevices,
    rtracklayer,
    multcomp,
    calibrate,
    graphics
Suggests: testthat, 
    knitr
VignetteBuilder:
    knitr
biocViews: DifferentialMethylation, Sequencing, HiddenMarkovModel, Coverage
License: GPL-3
Date: 2018-09-02
Encoding: UTF-8
LazyData: true
BugReports: https://github.com/shokoohi/DMCHMM/issues
RoxygenNote: 6.1.0
NeedsCompilation: no
Packaged: 2017-06-23 00:13:02 UTC; Farhad