Web AOA

Getting started

Make sure you are using Docker 20.x and Docker Compose 1.29.x

1. Run the services without building the docker containers:

   make dev-run

   This will pull all docker images from DockerHub.

2. The following services should be available:
   • Frontend: http://localhost/
   • API: http://localhost/api
   • API Swagger Documentation: http://localhost/api/docs
3. Migrate a dummy user (for local usage only)

   make migrate

   User credentials:
   Email: [email protected]
   Password: cycling8
4. Login and run a job: http://localhost/

Clean you local data: Sometimes it's useful to reset all local data (troubleshoots). With make clean-db the whole MongoDB will be deleted. And all files in the ./job folder needs to be removed.

Useful documents

• R Script
• Manage users
• Production Deployment
• Backup

Development

docker-compose up

Or add the build flag to make sure, that everything is up to date.

docker-compose up --build

All changes in src will be reloaded after the code (file) is changed. No need to restart the docker container.

Tests

Unit

The following command will run unit tests with Jest:

make test

See package.json command npm run test:unit

Configuration

There are a few environment variables (see .env) that can be set to configure the services dynamically.

Variable	Default	Description
NODE_ENV	dev	Please use production for the use in production.
HAPROXY_PORT	80	Bind services to a port.
HAPROXY_CONFIG	local	See Haproxy configs in /ops/haproxy.
HAPROXY_CERT	-	Path to the the certificate file which is used by Haproxy.
API_URL	http://localhost/api	Used by the frontend and Swagger.
API_COMMAND	start	Npm commands. Please use start:prod in production.
MONGODB_CONNECTION_STRING	-	For the API.
JWT_SECRET	-	The secret for the JWT tokens which are generated by the API.
API_KEY	-	Specifies the X-API-KEY for the API which is required to manage users.
MAX_UPLOAD_FILE_SIZE_MB	10	Max upload file size (e.g. *.rds files).

The following environment variables are required for the first start. It's not possible to change these values afterwards.

Variable	Default	Description
MONGO_INITDB_ROOT_USERNAME	-	MongoDB root username.
MONGO_INITDB_ROOT_PASSWORD	-	MongoDB root password.
MONGO_INITDB_DATABASE	-	Database name.
MONGO_INITDB_API_USERNAME	-	MongoDB API username.
MONGO_INITDB_API_PASSWORD	-	MongoDB API password.

Please make sure you're using the right credentials (MONGO_INITDB_API_*) for MONGODB_CONNECTION_STRING.