diff --git a/illumina/configs/test.config b/illumina/configs/test.config index 2b86b8f..8dfeb17 100644 --- a/illumina/configs/test.config +++ b/illumina/configs/test.config @@ -12,10 +12,10 @@ params { // computing resource-related parameters - account = "YOUR CLUSTER ACCOUNT/PROJECT NAME" - partition = "YOUR CLUSTER QUEUE/PARTITION" + account = "humgen" + partition = "sadacc-short" njobs = 2 - containers_dir = "PATH WHERE CONTAINERS ARE STORED" + containers_dir = "" // IDAT to GTC: requires less resources diff --git a/illumina/test.nf b/illumina/test.nf index 6c579c3..1652bd7 100644 --- a/illumina/test.nf +++ b/illumina/test.nf @@ -20,9 +20,9 @@ workflow { println "output_prefix = ${params.output_prefix}" println "output_dir = ${params.output_dir}" - println "account = ${params.account}" - println "partition = ${params.partition}" - println "containers_dir = ${params.containers_dir}" + println "containers_dir = PATH WHERE CONTAINERS ARE STORED" + println "account = ${params.account} # CHANGE TO YOURS" + println "partition = ${params.partition} # CHANGE TO YOURS" println "" //call_genotypes()