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Strange behavior of bigwig visualization #88

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camelest opened this issue Oct 5, 2023 · 1 comment
Open

Strange behavior of bigwig visualization #88

camelest opened this issue Oct 5, 2023 · 1 comment

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@camelest
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camelest commented Oct 5, 2023

Hi, thank you so much for the wonderful tool.

I have been working on bigwig visualization and depending on the display range, somehow the bigwig signals seem to change a lot. (v0.3.8) When we show the files at the boarder view, the signal becomes much lower.

Do you have any ideas what causes this?

frame = \
BigWig(bw1, alpha=0.6, color="#ff3366") + Title("fwd") + \
BigWig(bw2, alpha=0.6, color="#3300ff") + Title("rev")

frame.plot("chr5:35856000-35858000")
frame.plot("chr5:35840000-35858000")

This does not change even if I add num_bins = 1

Thank you so much for your help!

Example2 Example1
@wbszhu
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wbszhu commented Apr 21, 2024

Hi, can you provide more information (eg: bigwig files) help me to reproduce this problem? And also show me the whole code not just a snippet of them.

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