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Config.config
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Config.config
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####################################################
#Configure file for Edge Tester #
#put all configurations after the colon #
####################################################
Where is the location of pxrmt?
pxrmt: pxrmt
Where is the location of pxbp?
pxbp: pxbp
Where is the location of pxrr?
pxrr: pxrr
Where is raxml?
raxml: raxmlHPC
What is the name of the outfile?
outfile: Vert_MGWE_Results
Which species make up the bipartition/clade of interest on the first tree in the tree set (Comma separated)?
Species: alligator,caiman,phrynops,caretta,chelonoidis_nigra,emys_orbicularis
#Species: DrolusSFB,MJM2940,NepSFB,Neam
#Species: RuprSFB,MJM3360,WPYJ,Retr
#Species: alligator,caiman
How many topologies are you testing?
Topologies: 2
What is the name of the supermatrix file?
Supermatrix: ExampleConcat.fa
What is the name of the parts file?
PartsFile: ExampleGenes.model
What is the name of the tree set file?
Set: ExampleAllGeneTrees.tre
How many threads should be used?
Threads: 3
Is this a test (True or False)?
Test: False
Should this be run as verbose, good for trouble shooting, making big files and answering reviewer comments (True or False)?
Verbose: True
What should the name of the output folder be?
Folder: Vert_MGWE_Info
Hidden mode?
secret: False