use pixel spacing if FOV dimension is missing

FNNDSC · Oct 14, 2024 · fe35524 · fe35524
1 parent 4b2b8ae
commit fe35524
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Showing 2 changed files with 6 additions and 2 deletions.
diff --git a/csv2json/csv2json.py b/csv2json/csv2json.py
@@ -279,7 +279,11 @@ def make_json(self,csvFilePath, jsonFilePath, dcm_file_list,tags,detail_tags):
                     height = dimension[0]
                     width = dimension[1]
                 except:
-                    print(f"\nWARNING: Original dimension does not exist for {key}.")
+                    print(f"\nWARNING: Original dimension does not exist for {key}."
+                          f"\nUsing PixelSpacing for height and width calculation.")
+                    pixel_spacing = dcm_image.PixelSpacing
+                    height = round(pixel_spacing[0] * dcm_image.Rows)
+                    width = round(pixel_spacing[0] * dcm_image.Columns)
 
 
 

diff --git a/setup.py b/setup.py
@@ -6,7 +6,7 @@
 
 setup(
     name             = 'csv2json',
-    version          = '1.3.5',
+    version          = '1.3.6',
     description      = 'An app to convert CSV generated from pl-lld_inference to a JSON representation',
     long_description = readme,
     author           = 'FNNDSC',