Per-adsorbate trajectories#
-Download links are in the table below:
-Adsorbate symbol |
-Downloadable path |
-size |
-MD5 checksum |
-
---|---|---|---|
*O |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/0.tar |
-1006M |
-d4151542856b4b6405f276808f75358a |
-
*H |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/1.tar |
-850M |
-3697f04faf04251a23da8b88a78209f7 |
-
*OH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/2.tar |
-1.6G |
-a21081f3f55eb0c98a91021bbe3dac44 |
-
*OH2 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/3.tar |
-1.8G |
-b12b706854f5d899e02a9ae6578b5d45 |
-
*C |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/4.tar |
-1.1G |
-e4fe9890764fcf59e01e3ceab089b978 |
-
*CH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/6.tar |
-1.4G |
-ec9aa2c4c4bd4419359438ba7fbb881d |
-
*CHO |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/7.tar |
-1.4G |
-d32200f74ad5c3bfd42e8835f36d57ab |
-
*COH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/8.tar |
-1.6G |
-5418a1b331f6c7689a5405cca4cc8d15 |
-
*CH2 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/9.tar |
-1.6G |
-8ee1066149c305d7c17c219b369c5a73 |
-
CH2O |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/10.tar |
-1.7G |
-960c2450814024b66f3c79121179ac60 |
-
*CHOH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/11.tar |
-1.8G |
-60ac9f965f9589a3389483e3d1e58144 |
-
*CH3 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/12.tar |
-1.7G |
-7e123e6f4fb10d6897be3f47721dfd4a |
-
*OCH3 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/13.tar |
-1.8G |
-0823047bbbe05fa0e63f9d83ec601487 |
-
*CH2OH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/14.tar |
-1.9G |
-9ac71e198d75b1427182cd34abb73e4d |
-
*CH4 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/15.tar |
-1.9G |
-a405ce403018bf8afbd4425d5c0b34d5 |
-
*OHCH3 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/16.tar |
-2.1G |
-d3c829f1952db6e4f428273ee05f59b1 |
-
CC |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/17.tar |
-1.5G |
-d687a151345305897b9245af4b0f9967 |
-
*CCO |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/18.tar |
-1.7G |
-214ca96e620c5ec6e8a6ff8144a22a04 |
-
*CCH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/19.tar |
-1.6G |
-da2268545e80ca1664026449dd2fdd24 |
-
*CHCO |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/20.tar |
-1.7G |
-386c99407fe63080d26cda525dfdd8cd |
-
*CCHO |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/21.tar |
-1.8G |
-918b20960438494ab160a9dbd9668157 |
-
*COCHO |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/22.tar |
-1.8G |
-84424aa2ad30301e23ece1438ea39923 |
-
*CCHOH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/23.tar |
-2.0G |
-3cc90425ec042a70085ba7eb2916a79a |
-
*CCH2 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/24.tar |
-1.8G |
-9dbcf7566e40965dd7f8a186a75a718e |
-
CHCH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/25.tar |
-1.7G |
-a193b4c72f915ba0b21a41790696b23c |
-
CH2*CO |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/26.tar |
-1.8G |
-de83cf50247f5556fa4f9f64beff1eeb |
-
*CHCHO |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/27.tar |
-1.9G |
-1d140aaa2e7b287124ab38911a711d70 |
-
CHCOH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/28.tar |
-1.3G |
-682d8a6b05ca5948b34dc5e5f6bbcd61 |
-
*COCH2O |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/29.tar |
-1.9G |
-c8742faa8ca40e8edb4110069817fa70 |
-
CHOCHO |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/30.tar |
-2.0G |
-8cfbb67beb312b98c40fcb891dfa480a |
-
*COHCHO |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/31.tar |
-1.9G |
-6ffa903a62d8ec3319ecec6a03b06276 |
-
*COHCOH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/32.tar |
-2.0G |
-caca0058b641bfdc9f8de4527e60feb7 |
-
*CCH3 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/33.tar |
-1.8G |
-906543aaefc171edab388ff4f0fe8a20 |
-
*CHCH2 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/34.tar |
-1.8G |
-4dfab479495f76179749c1956046fbd8 |
-
*COCH3 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/35.tar |
-1.9G |
-29d1b992715054e920e8bb2afe97b393 |
-
*CHCHOH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/38.tar |
-2.0G |
-9e5912df6f7b11706d1046cdb9e3087e |
-
*CCH2OH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/39.tar |
-2.1G |
-7bcae43cee451306e34ec416588a7f09 |
-
*CHOCHOH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/40.tar |
-2.0G |
-f98866d08fe3451ae7ebc47bb51599aa |
-
*COCH2OH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/41.tar |
-1.4G |
-bfaf689e5827fcf26c51e567bb8dd1be |
-
*COHCHOH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/42.tar |
-2.0G |
-236fe4e950aa2fbdde94ef2821fb48d2 |
-
*OCHCH3 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/44.tar |
-2.1G |
-66acc5460a999625c3364f0f3bcca871 |
-
*COHCH3 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/45.tar |
-2.1G |
-bb4a01956736399c8cee5e219f8c1229 |
-
*CHOHCH2 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/46.tar |
-2.1G |
-e836de4ec146b1b611533f1ef682cace |
-
*CHCH2OH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/47.tar |
-2.0G |
-66df44121806debef6dc038df7115d1d |
-
*OCH2CHOH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/48.tar |
-2.2G |
-ff6981fdbcd2e65d351505c15d218d76 |
-
*CHOCH2OH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/49.tar |
-2.1G |
-448f7d352ab6e32f754e24de64ca302a |
-
*COHCH2OH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/50.tar |
-2.1G |
-8bff6bf3e10cc84acc4a283a375fcc23 |
-
*CHOHCHOH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/51.tar |
-2.0G |
-9c9e4d617d306751760a80f1453e71f1 |
-
*CH2CH3 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/52.tar |
-2.0G |
-ec1e964d2ee6f468fa5773743e3994a4 |
-
*OCH2CH3 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/53.tar |
-2.1G |
-d297b27b02822f9b6af80bdb64aee819 |
-
*CHOHCH3 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/54.tar |
-2.1G |
-368de083dafdc3bbdb560d35e2a102c0 |
-
*CH2CH2OH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/55.tar |
-2.1G |
-3c1aaf790659f7ff89bf1eed8b396b63 |
-
*CHOHCH2OH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/56.tar |
-2.2G |
-2d71adb9e305e6f3bca49e5df9b5a86a |
-
*OHCH2CH3 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/57.tar |
-2.3G |
-cf51128f8522b7b66fc68d79980d6def |
-
*NH2N(CH3)2 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/58.tar |
-1.6G |
-36ba974d80c20ff636431f7c0ad225da |
-
*ONN(CH3)2 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/59.tar |
-2.3G |
-fdc4cd19977496909d61be4aee61c4f1 |
-
*OHNNCH3 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/60.tar |
-2.1G |
-50a6ff098f9ba7adbba9ac115726cc5a |
-
*ONH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/62.tar |
-1.8G |
-47573199c545afe46c554ff756c3e38f |
-
*NHNH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/63.tar |
-1.7G |
-dd456b7e19ef592d9f0308d911b91d7c |
-
NNH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/65.tar |
-1.6G |
-c05289fd56d64c74306ebf57f1061318 |
-
*NO2NO2 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/67.tar |
-2.1G |
-4822a06f6c5f41bdefd3cbbd8856c11f |
-
NNO |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/68.tar |
-1.6G |
-2a27de122d32917cc5b6ac0a21c63c1c |
-
*N2 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/69.tar |
-1.5G |
-cc668fecf679b6edaac8fd8fb9cdd404 |
-
*ONNH2 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/70.tar |
-2.1G |
-dff880f1a5baa7f67b52fd3ed745443d |
-
*NH2 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/71.tar |
-1.6G |
-c7f383b50faa6244e265c9611466cb8f |
-
*NH3 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/72.tar |
-1.9G |
-2b355741f9300445703270e0e4b8c01c |
-
*NONH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/73.tar |
-1.8G |
-48877a0c6f2994baac82cb722711aaa2 |
-
*NH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/74.tar |
-1.4G |
-7979b9e7ab557d6979b33e352486f0ef |
-
*NO2 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/75.tar |
-1.7G |
-9f352fbc32bb2b8caf4788aba28b2eb7 |
-
*NO |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/76.tar |
-1.4G |
-482ee306a5ae2eee78cac40d10059ebc |
-
*N |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/77.tar |
-1.1G |
-bfb6e03d4a687987ff68976f0793cc46 |
-
*NO3 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/78.tar |
-1.8G |
-700834326e789a6e38bf3922d9fcb792 |
-
*OHNH2 |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/79.tar |
-2.1G |
-fa24472e0c02c34d91f3ffe6b77bfb11 |
-
*ONOH |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/80.tar |
-1.4G |
-4ddcccd62a834a76fe6167461f512529 |
-
*CN |
-https://dl.fbaipublicfiles.com/opencatalystproject/data/per_adsorbate_is2res/81.tar |
-1.5G |
-bc7c55330ece006d09496a5ff01d5d50 |
-
Note - A few adsorbates are intentionally left out for the test splits.
-Downloading any of the above and extracting will result in a folder:
-<index>/
-
-
system.txt
Text file containing information about the different adsorbate+catalyst system names. In total there are N systems. More details described below.
-
-<index>/
-
-
This contains N compressed trajectory files of the format
.extxyz.xz
.
-Files are named as
<system_id>.extxyz.xz
(wheresystem_id
is defined below).
-
-
where, <index>
can be 0 to 81. N is dependent on which adsorbate index is chosen.
The file system.txt
has information in the following format:
-system_id,reference_energy
where:
--
-
system_id
- Internal random ID corresponding to an adsorbate+catalyst system.
-reference_energy
- Energy used to reference system energies to bare catalyst+gas reference energies. Used for adsorption energy calculations.
-
The .extxyz.xz
files are LZMA compressed .extxyz
trajectory files. Each trajectory corresponds to a relaxation trajectory of a different adsorbate+catalyst system. Information about the .extxyz
trajectory file format may be found at https://wiki.fysik.dtu.dk/ase/ase/io/formatoptions.html#extxyz.
In order to uncompress the files, uncompress.py
provides a multi-core implementation which could be used.