Import and tidy ADMIXTURE output #17
Labels
enhancement
New feature or request
good first issue
Good for newcomers
help wanted
Extra attention is needed
We want to have a function that allows us to import the output from ADMIXTURE. The expected path would be:
gt_import_admixture
which reads in the admixture files and creates a sensible structure, with classgt_admixture
. We might want to consider a super-classgt_cluster
which would then allow us to recycle tidiers and autoplot for all clustering approaches.tidy
,augment
andautoplot
Things to do:
inst/extdata/anolis
. It is based on the tutorial:https://connor-french.github.io/intro-pop-structure-r/
There is a .Rmd that replicates the first part of the analysis (DAPC) in /data-raw/adegenet, which also has the code to read and format the dataset as a
gen_tibble
.gen_tibble
and then run ADMIXTUREinst/extdata
for a few clusterstidy()
andaugment()
) (look at the tutorial on lizards as it has some code to do that)autoplot()
method (look at the tutorial on lizards as it has some code to do that)The text was updated successfully, but these errors were encountered: