diff --git a/enzyme/BUILD b/enzyme/BUILD
index 266eb1b0044d..a1c4d56ffecd 100644
--- a/enzyme/BUILD
+++ b/enzyme/BUILD
@@ -206,8 +206,10 @@ genrule(
     name = "bundled-includes",
     srcs = glob(["include/**"]) + ["scripts/bundle-includes.sh"],
     outs = ["bundled_includes.h"],
-    cmd = "$(location :scripts/bundle-includes.sh) ./include $@",
+    cmd = "$(location :scripts/bundle-includes.sh) $(location :include/enzyme/enzyme) $@"
 )
+
+
 genrule(
     name = "gen_enzyme-clang++",
     srcs = [":enzyme-clang"],
diff --git a/enzyme/CMakeLists.txt b/enzyme/CMakeLists.txt
index a42db5c64ba2..c42d5736a5d4 100644
--- a/enzyme/CMakeLists.txt
+++ b/enzyme/CMakeLists.txt
@@ -310,7 +310,7 @@ set(bundled_includes "${CMAKE_CURRENT_BINARY_DIR}/Enzyme/Clang/bundled_includes.
 list(APPEND ENZYME_INCLUDES ${CMAKE_CURRENT_SOURCE_DIR}/scripts/bundle-includes.sh)
 add_custom_command(OUTPUT ${bundled_includes}
   COMMAND ${CMAKE_CURRENT_SOURCE_DIR}/scripts/bundle-includes.sh
-  ${CMAKE_CURRENT_SOURCE_DIR}/include/
+  ${CMAKE_CURRENT_SOURCE_DIR}/include/enzyme/enzyme
   ${bundled_includes}
   DEPENDS ${ENZYME_INCLUDES}
   COMMENT "Bundling includes"
diff --git a/enzyme/scripts/bundle-includes.sh b/enzyme/scripts/bundle-includes.sh
index 1cfb988518b7..e9a07d290928 100755
--- a/enzyme/scripts/bundle-includes.sh
+++ b/enzyme/scripts/bundle-includes.sh
@@ -2,9 +2,11 @@
 
 set -e
 
-INPUT_DIR=$1
+INPUT_DIR=$(dirname $1)/..
 OUTPUT_FILE=$2
 
+echo $INPUT_FILE
+echo $OUTPUT_FILE
 mkdir -p "$(dirname "$OUTPUT_FILE")"
 
 echo > "$OUTPUT_FILE"