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Description:
Currently, it is not possible to directly resolve a taxon's former names within the targeted ontology (e.g., ictv_latest). If the API well allows searching for exact matches on the label field in a specific ontology, to resolve a previous name of a taxon into its current name the user currently must:
locate the former name in an earlier ICTV ontology version.
Extract the corresponding ictv_id for that name.
Query the release of interest (typically the latest) using this ictv_id.
This process is cumbersome and improvable, particularly for users who need to reconcile historical references with the latest taxonomy.
Current Problem:
Previous taxon names cannot be resolved directly in the latest ontology.
Cross-referencing historical data with the current taxonomy requires multiple queries an probably manual effort to only target ICTV ontologies.
Proposed Resolution:
Add to each taxon term in the ontology an obo_synonym and/or synonym metadata for each former names (labels) known from previous releases.
Ensure the obo_synonym/ synonym field is indexed for efficient querying... the help interface currently indicates it is possible to specify a list of fields to seek in,
This allows users to search for historical names and resolve them directly in the targeted ontology.
Example, for the species taxon Betacoronavirus pandemicum (ICTV ID 20040588), the term in the ontology should include its previous known names:
Description:
Currently, it is not possible to directly resolve a taxon's former names within the targeted ontology (e.g., ictv_latest). If the API well allows searching for exact matches on the label field in a specific ontology, to resolve a previous name of a taxon into its current name the user currently must:
This process is cumbersome and improvable, particularly for users who need to reconcile historical references with the latest taxonomy.
Current Problem:
Previous taxon names cannot be resolved directly in the latest ontology.
Cross-referencing historical data with the current taxonomy requires multiple queries an probably manual effort to only target ICTV ontologies.
Proposed Resolution:
This allows users to search for historical names and resolve them directly in the targeted ontology.
Example, for the species taxon Betacoronavirus pandemicum (ICTV ID 20040588), the term in the ontology should include its previous known names:
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