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cannot use --singularity #104

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AlsoATraveler opened this issue Nov 1, 2024 · 1 comment
Open

cannot use --singularity #104

AlsoATraveler opened this issue Nov 1, 2024 · 1 comment

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@AlsoATraveler
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==== NAME=rna.align, STATUS=RetryableFailure, PARENT=
SHARD_IDX=0, RC=255, JOB_ID=10962
START=2024-10-31T07:37:19.909Z, END=2024-10-31T07:39:09.152Z
STDOUT=/xxx/223d2898-d815-4640-a4b1-24f863fe84b3/call-align/shard-0/execution/stdout
STDERR=/xxx/223d2898-d815-4640-a4b1-24f863fe84b3/call-align/shard-0/execution/stderr
STDERR_BACKGROUND_CONTENTS=
FATAL: Unable to handle docker://encodedcc/rna-seq-pipeline:1.2.4 uri: failed to get checksum for docker://encodedcc/rna-seq-pipeline:1.2.4: pinging container registry registry-1.docker.io: Get "https://registry-1.docker.io/v2/": dial tcp 98.159.108.58:443: i/o time
FATAL: Unable to handle docker://encodedcc/rna-seq-pipeline:1.2.4 uri: failed to get checksum for docker://encodedcc/rna-seq-pipeline:1.2.4: pinging container registry registry-1.docker.io: Get "https://registry-1.docker.io/v2/": dial tcp 98.159.108.58:443: i/o time

==== NAME=rna.align, STATUS=Failed, PARENT=
SHARD_IDX=0, RC=255, JOB_ID=12977
START=2024-10-31T07:39:53.473Z, END=2024-10-31T07:44:14.536Z
STDOUT=/xxx/223d2898-d815-4640-a4b1-24f863fe84b3/call-align/shard-0/attempt-2/execution/stdout
STDERR=/xxx/223d2898-d815-4640-a4b1-24f863fe84b3/call-align/shard-0/attempt-2/execution/stderr
STDERR_BACKGROUND_CONTENTS=
FATAL: Unable to handle docker://encodedcc/rna-seq-pipeline:1.2.4 uri: failed to get checksum for docker://encodedcc/rna-seq-pipeline:1.2.4: pinging container registry registry-1.docker.io: Get "https://registry-1.docker.io/v2/": dial tcp 118.193.202.219:443: i/o ti
FATAL: Unable to handle docker://encodedcc/rna-seq-pipeline:1.2.4 uri: failed to get checksum for docker://encodedcc/rna-seq-pipeline:1.2.4: pinging container registry registry-1.docker.io: Get "https://registry-1.docker.io/v2/": dial tcp 23.225.141.210:443: i/o tim

==== NAME=rna.align, STATUS=RetryableFailure, PARENT=
SHARD_IDX=1, RC=255, JOB_ID=10972
START=2024-10-31T07:37:19.909Z, END=2024-10-31T07:40:04.152Z
STDOUT=/xxx/223d2898-d815-4640-a4b1-24f863fe84b3/call-align/shard-1/execution/stdout
STDERR=/xxx/223d2898-d815-4640-a4b1-24f863fe84b3/call-align/shard-1/execution/stderr
STDERR_BACKGROUND_CONTENTS=
FATAL: Unable to handle docker://encodedcc/rna-seq-pipeline:1.2.4 uri: failed to get checksum for docker://encodedcc/rna-seq-pipeline:1.2.4: pinging container registry registry-1.docker.io: Get "https://registry-1.docker.io/v2/": dial tcp 31.13.91.6:443: i/o timeout
FATAL: Unable to handle docker://encodedcc/rna-seq-pipeline:1.2.4 uri: failed to get checksum for docker://encodedcc/rna-seq-pipeline:1.2.4: pinging container registry registry-1.docker.io: Get "https://registry-1.docker.io/v2/": dial tcp 98.159.

@AlsoATraveler
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caper run /xxx/rna-seq-pipeline-dev/rna-seq-pipeline.wdl -i input.json --local-out-dir . --womtool /home/user/.caper/womtool_jar/womtool-82.jar --cromwell /home/user/.caper/cromwell_jar/cromwell-82.jar -b local --singularity

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