From a66963c676ebce7971b68241457cbb003d3f255f Mon Sep 17 00:00:00 2001 From: ottojolanki Date: Wed, 2 Nov 2022 15:24:29 -0700 Subject: [PATCH] version_1.15.1 (#172) --- diploidify.wdl | 10 +++++----- genophase.wdl | 10 +++++----- hic.wdl | 14 +++++++------- hic_pipeline/__init__.py | 2 +- make_restriction_site_locations.wdl | 10 +++++----- megamap.wdl | 14 +++++++------- 6 files changed, 30 insertions(+), 30 deletions(-) diff --git a/diploidify.wdl b/diploidify.wdl index 4a47eb5..b0c7829 100644 --- a/diploidify.wdl +++ b/diploidify.wdl @@ -4,9 +4,9 @@ import "./hic.wdl" workflow diploidify { meta { - version: "1.15.0" - caper_docker: "encodedcc/hic-pipeline:1.15.0" - caper_singularity: "docker://encodedcc/hic-pipeline:1.15.0" + version: "1.15.1" + caper_docker: "encodedcc/hic-pipeline:1.15.1" + caper_singularity: "docker://encodedcc/hic-pipeline:1.15.1" } input { @@ -33,8 +33,8 @@ workflow diploidify { Int? create_diploid_dhs_ram_gb Int? create_diploid_dhs_disk_size_gb - String docker = "encodedcc/hic-pipeline:1.15.0" - String singularity = "docker://encodedcc/hic-pipeline:1.15.0" + String docker = "encodedcc/hic-pipeline:1.15.1" + String singularity = "docker://encodedcc/hic-pipeline:1.15.1" } RuntimeEnvironment runtime_environment = { diff --git a/genophase.wdl b/genophase.wdl index beb5172..445accf 100644 --- a/genophase.wdl +++ b/genophase.wdl @@ -7,9 +7,9 @@ struct RuntimeEnvironment { workflow genophase { meta { - version: "1.15.0" - caper_docker: "encodedcc/hic-pipeline:1.15.0" - caper_singularity: "docker://encodedcc/hic-pipeline:1.15.0" + version: "1.15.1" + caper_docker: "encodedcc/hic-pipeline:1.15.1" + caper_singularity: "docker://encodedcc/hic-pipeline:1.15.1" croo_out_def: "https://raw.githubusercontent.com/ENCODE-DCC/hic-pipeline/dev/croo_out_def.json" } @@ -30,8 +30,8 @@ workflow genophase { Int? concatenate_bams_disk_size_gb Boolean no_phasing = false - String docker = "encodedcc/hic-pipeline:1.15.0" - String singularity = "docker://encodedcc/hic-pipeline:1.15.0" + String docker = "encodedcc/hic-pipeline:1.15.1" + String singularity = "docker://encodedcc/hic-pipeline:1.15.1" } RuntimeEnvironment runtime_environment = { diff --git a/hic.wdl b/hic.wdl index 948d9a1..ca32a60 100644 --- a/hic.wdl +++ b/hic.wdl @@ -19,9 +19,9 @@ struct RuntimeEnvironment { workflow hic { meta { - version: "1.15.0" - caper_docker: "encodedcc/hic-pipeline:1.15.0" - caper_singularity: "docker://encodedcc/hic-pipeline:1.15.0" + version: "1.15.1" + caper_docker: "encodedcc/hic-pipeline:1.15.1" + caper_singularity: "docker://encodedcc/hic-pipeline:1.15.1" croo_out_def: "https://raw.githubusercontent.com/ENCODE-DCC/hic-pipeline/dev/croo_out_def.json" description: "ENCODE Hi-C pipeline, see https://github.com/ENCODE-DCC/hic-pipeline for details." } @@ -77,10 +77,10 @@ workflow hic { Int? create_accessibility_track_disk_size_gb String assembly_name = "undefined" - String docker = "encodedcc/hic-pipeline:1.15.0" - String singularity = "docker://encodedcc/hic-pipeline:1.15.0" - String delta_docker = "encodedcc/hic-pipeline:1.15.0_delta" - String hiccups_docker = "encodedcc/hic-pipeline:1.15.0_hiccups" + String docker = "encodedcc/hic-pipeline:1.15.1" + String singularity = "docker://encodedcc/hic-pipeline:1.15.1" + String delta_docker = "encodedcc/hic-pipeline:1.15.1_delta" + String hiccups_docker = "encodedcc/hic-pipeline:1.15.1_hiccups" } RuntimeEnvironment runtime_environment = { diff --git a/hic_pipeline/__init__.py b/hic_pipeline/__init__.py index 2cd6192..b726a22 100644 --- a/hic_pipeline/__init__.py +++ b/hic_pipeline/__init__.py @@ -1,5 +1,5 @@ __title__ = "hic-pipeline" -__version__ = "1.14.3" +__version__ = "1.15.1" __description__ = "ENCODE Hi-C uniform processing pipeline." __url__ = "https://github.com/ENCODE-DCC/hic-pipeline" __uri__ = __url__ diff --git a/make_restriction_site_locations.wdl b/make_restriction_site_locations.wdl index f28df6c..167d582 100644 --- a/make_restriction_site_locations.wdl +++ b/make_restriction_site_locations.wdl @@ -7,9 +7,9 @@ struct RuntimeEnvironment { workflow make_restriction_site_locations { meta { - version: "1.14.3" - caper_docker: "encodedcc/hic-pipeline:1.14.3" - caper_singularity: "docker://encodedcc/hic-pipeline:1.14.3" + version: "1.15.1" + caper_docker: "encodedcc/hic-pipeline:1.15.1" + caper_singularity: "docker://encodedcc/hic-pipeline:1.15.1" } parameter_meta { @@ -22,8 +22,8 @@ workflow make_restriction_site_locations { File reference_fasta String assembly_name String restriction_enzyme - String docker = "encodedcc/hic-pipeline:1.14.3" - String singularity = "docker://encodedcc/hic-pipeline:1.14.3" + String docker = "encodedcc/hic-pipeline:1.15.1" + String singularity = "docker://encodedcc/hic-pipeline:1.15.1" } diff --git a/megamap.wdl b/megamap.wdl index c652783..76b98f3 100644 --- a/megamap.wdl +++ b/megamap.wdl @@ -4,9 +4,9 @@ import "./hic.wdl" workflow megamap { meta { - version: "1.15.0" - caper_docker: "encodedcc/hic-pipeline:1.15.0" - caper_singularity: "docker://encodedcc/hic-pipeline:1.15.0" + version: "1.15.1" + caper_docker: "encodedcc/hic-pipeline:1.15.1" + caper_singularity: "docker://encodedcc/hic-pipeline:1.15.1" } input { @@ -29,10 +29,10 @@ workflow megamap { Int? add_norm_disk_size_gb # Pipeline images - String docker = "encodedcc/hic-pipeline:1.15.0" - String singularity = "docker://encodedcc/hic-pipeline:1.15.0" - String delta_docker = "encodedcc/hic-pipeline:1.15.0_delta" - String hiccups_docker = "encodedcc/hic-pipeline:1.15.0_hiccups" + String docker = "encodedcc/hic-pipeline:1.15.1" + String singularity = "docker://encodedcc/hic-pipeline:1.15.1" + String delta_docker = "encodedcc/hic-pipeline:1.15.1_delta" + String hiccups_docker = "encodedcc/hic-pipeline:1.15.1_hiccups" } RuntimeEnvironment runtime_environment = {