From 64d483acade68942dd3408972c15ce0a9d0326c2 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jurij=20Pe=C4=8Dar?= Date: Fri, 16 Aug 2024 10:25:23 +0200 Subject: [PATCH 1/6] {2023.06}[GCC/13.2.0] STAR 2.7.11b --- .../software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml index 883483f5d2..dcac6cfc72 100644 --- a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml +++ b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml @@ -15,3 +15,4 @@ easyconfigs: options: # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21034 from-commit: 76e7fc6657bab64bfbec826540a3a8f0040258f2 + - STAR-2.7.11b-GCC-13.2.0.eb From 56b9be9ad48d41a2555fdeb3c072297ebcd29dc2 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jurij=20Pe=C4=8Dar?= Date: Fri, 16 Aug 2024 11:12:42 +0200 Subject: [PATCH 2/6] {2023.06}[GCC/13.2.0] STAR 2.7.11b try 2 --- .../software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml index dcac6cfc72..5011c9d49c 100644 --- a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml +++ b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml @@ -15,4 +15,6 @@ easyconfigs: options: # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21034 from-commit: 76e7fc6657bab64bfbec826540a3a8f0040258f2 + - xxd-9.1.0307-GCCcore-13.2.0.eb + - HTSlib-1.19.1-GCC-13.2.0.eb - STAR-2.7.11b-GCC-13.2.0.eb From d189d21dd4b3e3f052a4850814e0b6602d67236f Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Thomas=20R=C3=B6blitz?= Date: Fri, 16 Aug 2024 12:52:49 +0200 Subject: [PATCH 3/6] Remove redundant easyconfigs easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml Co-authored-by: Kenneth Hoste --- .../software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml | 2 -- 1 file changed, 2 deletions(-) diff --git a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml index 5011c9d49c..dcac6cfc72 100644 --- a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml +++ b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml @@ -15,6 +15,4 @@ easyconfigs: options: # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21034 from-commit: 76e7fc6657bab64bfbec826540a3a8f0040258f2 - - xxd-9.1.0307-GCCcore-13.2.0.eb - - HTSlib-1.19.1-GCC-13.2.0.eb - STAR-2.7.11b-GCC-13.2.0.eb From 3ce0c951b2308b66f04989aeab64ddd69415d313 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jure=20Pe=C4=8Dar?= Date: Fri, 16 Aug 2024 22:47:35 +0200 Subject: [PATCH 4/6] Update eessi-2023.06-eb-4.9.2-2023b.yml fetch updated .eb file to remove hardcoded -mavx2 --- .../software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml index dcac6cfc72..8479061de7 100644 --- a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml +++ b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml @@ -16,3 +16,6 @@ easyconfigs: # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21034 from-commit: 76e7fc6657bab64bfbec826540a3a8f0040258f2 - STAR-2.7.11b-GCC-13.2.0.eb + options: + #see https://github.com/easybuilders/easybuild-easyconfigs/pull/21200 + from-commit: cd8b1ce595195f132125d9b25a98a9efe702c72a From 95f9d6d7dc33375ff961030aa340d1c8d7a8d13c Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Thomas=20R=C3=B6blitz?= Date: Mon, 19 Aug 2024 09:20:38 +0200 Subject: [PATCH 5/6] Add missing ':' at end of line --- .../software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml index 8479061de7..edfd491cce 100644 --- a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml +++ b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml @@ -15,7 +15,7 @@ easyconfigs: options: # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21034 from-commit: 76e7fc6657bab64bfbec826540a3a8f0040258f2 - - STAR-2.7.11b-GCC-13.2.0.eb + - STAR-2.7.11b-GCC-13.2.0.eb: options: #see https://github.com/easybuilders/easybuild-easyconfigs/pull/21200 from-commit: cd8b1ce595195f132125d9b25a98a9efe702c72a From 8ae3eed71860ccf7293248e3808e2673796bd69c Mon Sep 17 00:00:00 2001 From: Kenneth Hoste Date: Tue, 20 Aug 2024 12:05:20 +0200 Subject: [PATCH 6/6] use more recent commit for installing STAR 2.7.11b w/ GCC/13.2.0 --- .../2023.06/eessi-2023.06-eb-4.9.2-2023b.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml index edfd491cce..a1e45f0baa 100644 --- a/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml +++ b/easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023b.yml @@ -17,5 +17,5 @@ easyconfigs: from-commit: 76e7fc6657bab64bfbec826540a3a8f0040258f2 - STAR-2.7.11b-GCC-13.2.0.eb: options: - #see https://github.com/easybuilders/easybuild-easyconfigs/pull/21200 - from-commit: cd8b1ce595195f132125d9b25a98a9efe702c72a + # see https://github.com/easybuilders/easybuild-easyconfigs/pull/21200 + from-commit: 765ba900daf5953e306c4dad896febe52fdd6c00