Version 3.1.7

What's Changed

• Move to ubuntu 22.04 and Python 3.11 in Docker by @manthey in #390
• Additional tuning for OCR. by @manthey in #391
• Use barcodes by @manthey in #392
• Make it clearer to adjust API match methods. by @manthey in #393

Full Changelog: v3.1.6...v3.1.7

Version 3.1.6

What's Changed

• Suggested fix for XSS issues by @gershkovich in #386
• Unpin torchvision. by @manthey in #387
• Update trivyignore by @manthey in #388
• Harden path case number OCR processing. by @manthey in #389

New Contributors

• @gershkovich made their first contribution in #386

Full Changelog: v3.1.5...v3.1.6

Version 3.1.5

What's Changed

• Unpin pillow. This had been pinned because of easyocr by @manthey in #385

Full Changelog: v3.1.4...v3.1.5

Version 3.1.4

What's Changed

• When provisioning, update mongo compatibility version by @manthey in #383

Full Changelog: v3.1.3...v3.1.4

Version 3.1.3

What's Changed

• Update to handle mongo 7 by @manthey in #382

Full Changelog: v3.1.2...v3.1.3

Version 3.1.2

What's Changed

• Handle PIL changing textsize by @manthey in #376
• Update node version in Dockerfile. by @manthey in #380
• Add the ometiff and dicom sources to the deployment. by @manthey in #381

Full Changelog: v3.1.1...v3.1.2

Version 3.1.1

What's Changed

• Document additional memory for iSyntax use by @manthey in #361
• Update CUSTOMIZING docs with examples and links by @naglepuff in #360
• Retry tests a limited number of times on CI by @manthey in #365
• Hide upload button when in a SEER project folder by @naglepuff in #366
• Update some documentation on debugging. by @manthey in #368
• Add a system endpoint to report the complete config and settings by @manthey in #369
• Preserve checked items on re-render by @naglepuff in #367
• Guard against slow subtree counts. by @manthey in #371
• Add simple docs for configuring the SEEM*DMS database. by @manthey in #370
• API Search Basic Tests by @naglepuff in #372
• Update the docs based on feedback by @manthey in #373
• Allow all users to do bulk refiling. by @manthey in #375
• Add some frontend tests for lookup workflow by @naglepuff in #374
• Store custom metadata in the barcode field for isyntax by @manthey in #364

Full Changelog: v3.1.0...v3.1.1

Version 3.1.0

What's Changed

• Adjust the default schema to a file that exists by @manthey in #283
• Use the allow-all configuration by default. by @manthey in #284
• added closing double quote on line 172 command by @amcrabtree in #287
• Improve deployment by @manthey in #285
• Update CI to not use old circleci images. by @manthey in #296
• Switch to Ubuntu 20.04 as the base. by @manthey in #297
• Add the import button to the Unfiled folder. by @manthey in #298
• Add schema endpoint. by @manthey in #299
• Move determining project files function. by @manthey in #300
• Add a config option to reimport moved files. by @manthey in #301
• Add a folder refileList endpoint by @manthey in #302
• Add a viewer for excel files. by @manthey in #305
• Add an example compose file to help developers. by @manthey in #303
• add override.yml to gitignore by @marySalvi in #306
• Tweak the developer docker-compose file. by @manthey in #307
• Add an import report after ocr. by @manthey in #313
• Add bulk refile controls by @naglepuff in #310
• change install order by @marySalvi in #314
• Add schema folder by @marySalvi in #312
• Link to item page of import/export summary report by @naglepuff in #317
• Add rejection reason dropdown by @naglepuff in #318
• Add settings for PHI/PII choices by @naglepuff in #320
• Update license to best-practices text by @manthey in #321
• Improve test isolation. by @manthey in #324
• Refactor dockerfile to use pyenv. by @manthey in #326
• Reset config for another test. by @manthey in #325
• Add tests for unfiled images using default schema by @naglepuff in #323
• Import default schema by @marySalvi in #322
• Newer versions of easyocr can fail. by @manthey in #327
• Update easyocr pinning to be only as strict as needed. by @manthey in #328
• Fix CI with flake8. by @manthey in #330
• Fix CI to work with tox 4. by @manthey in #331
• Fix a bug with some actions. by @manthey in #333
• Update the python version used in the docker. by @manthey in #334
• Document adding the LDAP plugin. by @manthey in #335
• Add item to add title call. by @manthey in #336
• Explicitly update setuptools to reduce a warning. by @manthey in #338
• API docs by @manthey in #332
• Ignore a new bugbear warning by @manthey in #339
• Support flattening girder item lists. by @manthey in #340
• Improve next folder logic when flatten is used by @manthey in #341
• Adjust how _item_find is referenced to fix a swagger issue by @manthey in #343
• Include python 3.8 in the build by @manthey in #344
• Customize what metadata is added to exported images. by @manthey in #348
• Fix a bug when flatten didn't always update the metadata list by @manthey in #349
• Css adjustment by @manthey in #353
• Add Table of Contents to install docs by @naglepuff in #356
• Add support for iSyntax files by @manthey in #354
• Matching API by @manthey in #355
• Avoid keeping xml white space in isyntax files by @manthey in #358

New Contributors

• @amcrabtree made their first contribution in #287
• @marySalvi made their first contribution in #306

Full Changelog: v3.0.0...v3.1.0

Version 3.0.0

What's Changed

• Add registration policy documentation by @naglepuff in #215
• Fix image size in RST documentation by @naglepuff in #217
• Add config to enable redaction and hide metadata by @naglepuff in #219
• Add textbox for editing redacted metadata by @naglepuff in #221
• Add more logging during export. by @manthey in #222
• Redact an area from the WSI. by @manthey in #224
• Update the change log. by @manthey in #226
• Add SFTP to export process by @naglepuff in #223
• Fix some linting issues. by @manthey in #229
• Improve logging and other end-user messages for SFTP export by @naglepuff in #231
• Update customization docs. by @manthey in #234
• Allow redacting areas for associated images by @naglepuff in #238
• Add ability to run OCR on imported images by @naglepuff in #233
• Guard batch job. by @manthey in #241
• Configure export fields by @naglepuff in #244
• Add support for editing metadata in folder lists by @manthey in #247
• Don't perform list actions with no items. by @manthey in #249
• css improvements for bulk edit table by @manthey in #251
• Minor hardening against nan serialization. by @manthey in #253
• Support Schema Without Filename by @naglepuff in #250
• Improve logging, speed up OCR by @manthey in #259
• Improve refiling unfiled images. by @manthey in #260
• Fix some spots where ImageID and TokenID were hardcoded. by @manthey in #262
• Harden against non-dictionary. by @manthey in #264
• Fix exporting refiled items. by @manthey in #268
• Do not require image ids. by @manthey in #269
• Add code to try to ensure editable images are the right size. by @manthey in #273
• Better invalidate the WSI thumbnail cache on changes. by @manthey in #275
• Don't fail if mount point is missing. by @manthey in #281
• Clear caches in docker image. by @manthey in #282

Full Changelog: v2.2.1...v3.0.0

Version 2.2.1

Improvements

• Make redacting a square on the macro an option (#198)

Bug fixes

• Require newer version of HistomicsUI plugin (#197)

Build Improvements

• Use trivy to scan docker image (#199)