From a89c2e05c9da125cfcf115a32538e95e30d27a56 Mon Sep 17 00:00:00 2001 From: mvdbeek <6804901+mvdbeek@users.noreply.github.com> Date: Sat, 22 Jun 2024 10:01:41 +0000 Subject: [PATCH] [create-pull-request] automated change --- usegalaxy.org/annotation.yml.lock | 3 + usegalaxy.org/chemicaltoolbox.yml.lock | 1 + usegalaxy.org/convert_formats.yml.lock | 1 + usegalaxy.org/data_managers.yml.lock | 1 + usegalaxy.org/graph_display_data.yml.lock | 1 + usegalaxy.org/machine_learning.yml.lock | 1 + usegalaxy.org/mapping.yml.lock | 1 + usegalaxy.org/metagenomic_analysis.yml.lock | 8 ++ usegalaxy.org/mothur.yml.lock | 81 +++++++++++++++++++++ usegalaxy.org/planttribes.yml.lock | 2 + usegalaxy.org/proteomics.yml.lock | 7 ++ usegalaxy.org/rna_seq.yml.lock | 1 + usegalaxy.org/text_manipulation.yml.lock | 1 + usegalaxy.org/virology.yml.lock | 5 ++ 14 files changed, 114 insertions(+) diff --git a/usegalaxy.org/annotation.yml.lock b/usegalaxy.org/annotation.yml.lock index 9766d577..4b6d6701 100644 --- a/usegalaxy.org/annotation.yml.lock +++ b/usegalaxy.org/annotation.yml.lock @@ -230,6 +230,7 @@ tools: - 200c378d85f3 - 2c68b0c38785 - 4839e590cb26 + - 51dd22484644 - 809dfc93d593 - ac8250086ac3 - ba6f87115e13 @@ -356,6 +357,7 @@ tools: - 9f1660129403 - cd0484c5f9f1 - d58a57db7a96 + - f54e0ba38257 tool_panel_section_id: annotation tool_panel_section_label: Annotation - name: cooc_tabmut @@ -364,6 +366,7 @@ tools: - 4be399803856 - 52bd683c6d3f - 579538ff939d + - cb0d9eb033ef - eeb5c054ecf8 tool_panel_section_id: annotation tool_panel_section_label: Annotation diff --git a/usegalaxy.org/chemicaltoolbox.yml.lock b/usegalaxy.org/chemicaltoolbox.yml.lock index 195a1cd1..ca78b871 100644 --- a/usegalaxy.org/chemicaltoolbox.yml.lock +++ b/usegalaxy.org/chemicaltoolbox.yml.lock @@ -204,6 +204,7 @@ tools: - name: openms_openpepxl owner: galaxyp revisions: + - 10d8b43176a9 - 4d2b77fd7a28 - fc36cfd19834 tool_panel_section_id: chemicaltoolbox diff --git a/usegalaxy.org/convert_formats.yml.lock b/usegalaxy.org/convert_formats.yml.lock index e602faea..fdfb6a77 100644 --- a/usegalaxy.org/convert_formats.yml.lock +++ b/usegalaxy.org/convert_formats.yml.lock @@ -8,6 +8,7 @@ tools: revisions: - 27673f5b5343 - 359e043a285c + - 7ecb45126cd2 - b226e0c805a5 - f5792425ea50 tool_panel_section_id: convert_formats diff --git a/usegalaxy.org/data_managers.yml.lock b/usegalaxy.org/data_managers.yml.lock index 2dae278d..91f6fe58 100644 --- a/usegalaxy.org/data_managers.yml.lock +++ b/usegalaxy.org/data_managers.yml.lock @@ -101,6 +101,7 @@ tools: - name: data_manager_build_kraken2_database owner: iuc revisions: + - 13851aefa67a - 539b008cfe1c - e4b4837f06f5 tool_panel_section_id: data_managers diff --git a/usegalaxy.org/graph_display_data.yml.lock b/usegalaxy.org/graph_display_data.yml.lock index 7a06e8f5..407cbbee 100644 --- a/usegalaxy.org/graph_display_data.yml.lock +++ b/usegalaxy.org/graph_display_data.yml.lock @@ -320,5 +320,6 @@ tools: - 0e592dcaeb7f - 74074746ccd8 - b1260bca5fdc + - dc3fe98e7b37 tool_panel_section_id: graph_display_data tool_panel_section_label: Graph/Display Data diff --git a/usegalaxy.org/machine_learning.yml.lock b/usegalaxy.org/machine_learning.yml.lock index 82d17514..f6d9bad2 100644 --- a/usegalaxy.org/machine_learning.yml.lock +++ b/usegalaxy.org/machine_learning.yml.lock @@ -484,5 +484,6 @@ tools: revisions: - 693bfd012601 - d49893faf877 + - ee6c2152e092 tool_panel_section_id: machine_learning tool_panel_section_label: Machine Learning diff --git a/usegalaxy.org/mapping.yml.lock b/usegalaxy.org/mapping.yml.lock index 236effbd..1550393c 100644 --- a/usegalaxy.org/mapping.yml.lock +++ b/usegalaxy.org/mapping.yml.lock @@ -6,6 +6,7 @@ tools: - name: bioext_bealign owner: iuc revisions: + - 396cc0c65700 - 8a7462c0ac14 - a07a2d9ddd42 - a287431cdf4f diff --git a/usegalaxy.org/metagenomic_analysis.yml.lock b/usegalaxy.org/metagenomic_analysis.yml.lock index 2945ba18..cd9edaa9 100644 --- a/usegalaxy.org/metagenomic_analysis.yml.lock +++ b/usegalaxy.org/metagenomic_analysis.yml.lock @@ -332,6 +332,7 @@ tools: - name: khmer_partition owner: iuc revisions: + - 5a0fa29951ae - b7429b53be2a - e562293ee5ec tool_panel_section_id: metagenomic_analysis @@ -341,6 +342,7 @@ tools: revisions: - 2c763fb18010 - 98b53d46e851 + - adb3dd5a899f tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis - name: khmer_count_median @@ -348,11 +350,13 @@ tools: revisions: - 06d1d91c67e5 - 77410799e8e9 + - b3d513c7093e tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis - name: khmer_filter_below_abundance_cutoff owner: iuc revisions: + - 19607c740d19 - 569001af897d - b469ab47b490 tool_panel_section_id: metagenomic_analysis @@ -361,12 +365,14 @@ tools: owner: iuc revisions: - 557cc16931f4 + - b1fe2ef3d244 - e84073b420a8 tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis - name: khmer_abundance_distribution_single owner: iuc revisions: + - 385a965c6f87 - 55109291a355 - c018a72b523e tool_panel_section_id: metagenomic_analysis @@ -376,11 +382,13 @@ tools: revisions: - 8c6433857aa8 - 97f65399e30d + - b86562b4f3fd tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis - name: khmer_abundance_distribution owner: iuc revisions: + - 7624945cacd3 - c0caca5af183 - e0de12ae3fc2 tool_panel_section_id: metagenomic_analysis diff --git a/usegalaxy.org/mothur.yml.lock b/usegalaxy.org/mothur.yml.lock index 1efd4b9b..04841c5e 100644 --- a/usegalaxy.org/mothur.yml.lock +++ b/usegalaxy.org/mothur.yml.lock @@ -10,6 +10,7 @@ tools: - 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81df36f90a1b @@ -150,6 +157,7 @@ tools: - 4041dc69af62 - 411ddfefe041 - 4af62516059b + - 600c14c6dcc5 - 609770e516fa - d7ea2d0b4917 tool_panel_section_id: mothur @@ -159,6 +167,7 @@ tools: revisions: - 11be0e5f3ebb - 656ffc277a38 + - 7afd2d352e05 - 86a40294e149 - d50fdfdc2a0c tool_panel_section_id: mothur @@ -180,6 +189,7 @@ tools: - 618bf5d295e7 - 68c20caae797 - 99c44fc3cd32 + - ccdcfd746250 tool_panel_section_id: mothur tool_panel_section_label: Mothur - name: mothur_split_abund @@ -189,12 +199,14 @@ tools: - cd7b11709aa9 - d850b4b9659d - fa40dca23957 + - ff3e693f8d4d tool_panel_section_id: mothur tool_panel_section_label: Mothur - name: mothur_sort_seqs owner: iuc revisions: - 334476d3e35d + - 437838af4988 - 56bf9112c46b - cbe644faff63 - fc60d2e290a4 @@ -203,6 +215,7 @@ tools: - name: mothur_shhh_seqs owner: iuc revisions: + - 60d8636adf3e - 6ee54b761c3c - aa189387c19c - d7e469b059da @@ -214,6 +227,7 @@ tools: revisions: - 4e6cdbeaf3b5 - 7cca6773bc2a + - af840f3c860e - dfaf60f40e94 - 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40b0d8eb3725 - 485e149a8aba - 539f247ff952 - 5bc3e30e1d9e @@ -411,6 +439,7 @@ tools: - 46689a444f2b - 7474b222205d - 74d1b765843b + - b931ab1fb5da - ee26037477a1 tool_panel_section_id: mothur tool_panel_section_label: Mothur @@ -420,6 +449,7 @@ tools: - 65955ae23f29 - 70d555c67aec - aff64115d95f + - fbb78e1bc3a3 - fd6cebeaa143 tool_panel_section_id: mothur tool_panel_section_label: Mothur @@ -430,12 +460,14 @@ tools: - 408650f291f7 - 94d78559a361 - 99579d05a632 + - b52a0ca5e21c tool_panel_section_id: mothur tool_panel_section_label: Mothur - name: mothur_pairwise_seqs owner: iuc revisions: - 4a73df58d56b + - 8f31cb68e5bf - bc53948e3666 - c05906ab8c41 - cfe04aa12a39 @@ -444,6 +476,7 @@ tools: - name: mothur_otu_hierarchy owner: iuc revisions: + - 2e82b56377d8 - 693fbc55f70e - 7590f83a6419 - 98abd0047263 @@ -455,6 +488,7 @@ tools: revisions: - 0037bed5bf77 - 0fb08aeb215e + - 7cfe3ddd183a - a02117aa58a5 - a2511c40e7b8 tool_panel_section_id: mothur @@ -471,6 +505,7 @@ tools: - name: mothur_nmds owner: iuc revisions: + - 35a66c1fae5e - 3cc04a065490 - 98f1cc2bc428 - a81680d1db78 @@ -480,6 +515,7 @@ tools: - name: mothur_mimarks_attributes owner: iuc revisions: + - 1dbd31c7a031 - 247d1bacbefe - 8354a02a83e1 - b9fe5cf8f2bc @@ -493,6 +529,7 @@ tools: - 19836a38dc20 - 6adb9311e99d - fe9f4a0d61d3 + - feb408da0143 tool_panel_section_id: mothur tool_panel_section_label: Mothur - name: mothur_merge_taxsummary @@ -518,6 +555,7 @@ tools: revisions: - 052bc33e134e - 23d11599dfaf + - 2624af4d11ac - ddd068a49efe - f170676a1d12 tool_panel_section_id: mothur @@ -528,6 +566,7 @@ tools: - 12b1bd17d614 - 21a9274337f5 - 7bd37d6decd9 + - bc20680d28d5 - f5dba396fe63 tool_panel_section_id: mothur tool_panel_section_label: Mothur @@ -537,6 +576,7 @@ tools: - 17b471efdc40 - b0f1e033e18d - bcc475f1af4a + - d1a9a6260101 - ea41c6924945 tool_panel_section_id: mothur tool_panel_section_label: Mothur @@ -556,6 +596,7 @@ tools: - 5eaf2d7253f6 - 60f0853e33f3 - b5f98810181e + - d0967ae326be - f7a10f16aa99 tool_panel_section_id: mothur tool_panel_section_label: Mothur @@ -563,6 +604,7 @@ tools: owner: iuc revisions: - 23c1af22331b + - 9a074f55579e - a33258dc5bf8 - d20ab289b0c0 - d56e5a7a9cef @@ -590,6 +632,7 @@ tools: owner: iuc revisions: - 1684157db3c1 + - 4287ded138de - e6a7eaf1923d - e9b12c5ad27f - f09c0a3bf8b9 @@ -602,6 +645,7 @@ tools: - 4405d0fbfada - 5280cc8135eb - 6ec3ec95ae68 + - 7a6b209a7bd7 tool_panel_section_id: mothur tool_panel_section_label: Mothur - name: mothur_make_contigs @@ -610,6 +654,7 @@ tools: - 00dd059b77e5 - 4b72b6c43327 - 4e9136c2c4c3 + - 7238968f58f7 - c3203178c41f - f65c34178487 tool_panel_section_id: mothur @@ -617,6 +662,7 @@ tools: - name: mothur_make_biom owner: iuc revisions: + - 0b5397a74165 - 143cd841de28 - 55e975c9a012 - cfdfa41e01a4 @@ -638,6 +684,7 @@ tools: revisions: - 0c9eb32683bf - 1c8906cc1ddd + - 6e895dd848e8 - c2d81e2bf502 - e643cc6c39cb tool_panel_section_id: mothur @@ -646,6 +693,7 @@ tools: owner: iuc revisions: - 1cd0f3241d5b + - 1e4687170395 - 1fe5098be27a - 45a78bb8819d - eefbe872fd04 @@ -658,6 +706,7 @@ tools: - 772e6a5b7358 - ccd1ce71c11f - d47a909185ef + - 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name: mothur_chimera_slayer owner: iuc revisions: + - 0cc35c0a3d05 - 0fde524609b1 - 753321ddded9 - a899cc1416bc @@ -1118,6 +1195,7 @@ tools: - 0f3baac24045 - 128cbea05aeb - 17df89a5847b + - 54bc4863eb3d - 6db50600493e tool_panel_section_id: mothur tool_panel_section_label: Mothur @@ -1133,6 +1211,7 @@ tools: - name: mothur_chimera_ccode owner: iuc revisions: + - 4e3288a885b1 - 751904c1033d - 79255ca0b19a - 983b440a26b2 @@ -1160,6 +1239,7 @@ tools: - name: mothur_anosim owner: iuc revisions: + - 3218d342b0de - 4a283edb151c - 652d2803062c - 87c5f82dac4c @@ -1172,6 +1252,7 @@ tools: - 389ac95dc2f5 - 58b8ae43d27f - 5aa5d26efeea + - 8642712a607c - d0074e20ae76 tool_panel_section_id: mothur tool_panel_section_label: Mothur diff --git a/usegalaxy.org/planttribes.yml.lock b/usegalaxy.org/planttribes.yml.lock index 0812f2e3..79a38bb8 100644 --- a/usegalaxy.org/planttribes.yml.lock +++ b/usegalaxy.org/planttribes.yml.lock @@ -6,6 +6,7 @@ tools: - name: plant_tribes_assembly_post_processor owner: greg revisions: + - 2c2ad8af0a4e - 4d73965d99a2 - 9c72c91d291f tool_panel_section_id: planttribes @@ -25,6 +26,7 @@ tools: - name: plant_tribes_gene_family_aligner owner: greg revisions: + - 1c5a484fc06f - 79ea0eef1942 tool_panel_section_id: planttribes tool_panel_section_label: PlantTribes diff --git a/usegalaxy.org/proteomics.yml.lock b/usegalaxy.org/proteomics.yml.lock index dff69fa0..66730a10 100644 --- a/usegalaxy.org/proteomics.yml.lock +++ b/usegalaxy.org/proteomics.yml.lock @@ -83,6 +83,7 @@ tools: - name: openms_decoydatabase owner: galaxyp revisions: + - 06cca574e337 - 25529df60a81 tool_panel_section_id: proteomics tool_panel_section_label: Proteomics @@ -90,23 +91,27 @@ tools: owner: galaxyp revisions: - 9876bda3ec53 + - c9b2a5022d9e tool_panel_section_id: proteomics tool_panel_section_label: Proteomics - name: openms_msgfplusadapter owner: galaxyp revisions: + - 810779f0cf49 - f5ec766d80cf tool_panel_section_id: proteomics tool_panel_section_label: Proteomics - name: openms_peptideindexer owner: galaxyp revisions: + - 0693b186f39e - d6aca689dd48 tool_panel_section_id: proteomics tool_panel_section_label: Proteomics - name: openms_falsediscoveryrate owner: galaxyp revisions: + - 4138acdeedfb - 6ccbf9a2072c tool_panel_section_id: proteomics tool_panel_section_label: Proteomics @@ -114,11 +119,13 @@ tools: owner: galaxyp revisions: - adca857b4884 + - ea02403ff738 tool_panel_section_id: proteomics tool_panel_section_label: Proteomics - name: openms_metaprosip owner: galaxyp revisions: + - 5f72a8fa935d - 819ed5aae76f tool_panel_section_id: proteomics tool_panel_section_label: Proteomics diff --git a/usegalaxy.org/rna_seq.yml.lock b/usegalaxy.org/rna_seq.yml.lock index 9cda07c7..c2c2d896 100644 --- a/usegalaxy.org/rna_seq.yml.lock +++ b/usegalaxy.org/rna_seq.yml.lock @@ -525,6 +525,7 @@ tools: - name: brew3r_r owner: iuc revisions: + - 3198f52bffaa - 928a52b5c938 tool_panel_section_id: rna_seq tool_panel_section_label: RNA-seq diff --git a/usegalaxy.org/text_manipulation.yml.lock b/usegalaxy.org/text_manipulation.yml.lock index e2eaa181..82d00775 100644 --- a/usegalaxy.org/text_manipulation.yml.lock +++ b/usegalaxy.org/text_manipulation.yml.lock @@ -198,6 +198,7 @@ tools: - name: concatenate_multiple_datasets owner: artbio revisions: + - 5b1b635232ed - 5b2cc63d7a21 tool_panel_section_id: text_manipulation tool_panel_section_label: Text Manipulation diff --git a/usegalaxy.org/virology.yml.lock b/usegalaxy.org/virology.yml.lock index 146458ef..dbe42ac5 100644 --- a/usegalaxy.org/virology.yml.lock +++ b/usegalaxy.org/virology.yml.lock @@ -7,6 +7,7 @@ tools: owner: iuc revisions: - 17f911830a8c + - 3a72fede57ce - 40737febe339 - 5e668dc9f379 - 731182d54f78 @@ -29,6 +30,7 @@ tools: - 51afc8a64951 - 618297d23022 - 7fe36019c073 + - fcbeda41d0ac tool_panel_section_id: virology tool_panel_section_label: Virology - name: ivar_getmasked @@ -43,6 +45,7 @@ tools: - 28a6f1908fcc - 3d18f8c3c0f6 - 43aac8d29685 + - 5dc33613c288 - 69797fa273c3 - 75c279fa403a - 8d36959b000d @@ -62,6 +65,7 @@ tools: - 5671e1d3d5ee - 5d6ed46cc101 - 86a20ae274fc + - a250929be21b - c092052ed673 - cf65217ad61c - db536ad45f28 @@ -78,6 +82,7 @@ tools: - 49236b03e4fd - 584beffa972b - aa9de8f20668 + - abbc8041e8ec - f95f403841ad tool_panel_section_id: virology tool_panel_section_label: Virology