diff --git a/workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/Scaffolding-HiC-VGP8.ga b/workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/Scaffolding-HiC-VGP8.ga index 912d4677a..499b03b32 100644 --- a/workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/Scaffolding-HiC-VGP8.ga +++ b/workflows/VGP-assembly-v2/Scaffolding-HiC-VGP8/Scaffolding-HiC-VGP8.ga @@ -73,7 +73,13 @@ "type": "parameter_input", "uuid": "3495a63c-bcd5-45fa-b327-ed7ec0234e78", "when": null, - "workflow_outputs": [] + "workflow_outputs": [ + { + "label": null, + "output_name": "output", + "uuid": "1c4419fd-2eca-4464-9a67-4d693379981b" + } + ] }, "2": { "annotation": "", @@ -100,7 +106,13 @@ "type": "data_input", "uuid": "13cd4c1c-968b-4077-9845-e06738a2efb8", "when": null, - "workflow_outputs": [] + "workflow_outputs": [ + { + "label": null, + "output_name": "output", + "uuid": "8886e85a-6c79-49f0-8291-357583692bec" + } + ] }, "3": { "annotation": "", @@ -127,7 +139,13 @@ "type": "parameter_input", "uuid": "1f4997fc-1880-4416-8857-2a63d3501a6c", "when": null, - "workflow_outputs": [] + "workflow_outputs": [ + { + "label": null, + "output_name": "output", + "uuid": "bcb451a9-4588-4f66-97e9-e49a090b1355" + } + ] }, "4": { "annotation": "Taxonomic lineage for the organism being assembled for Busco analysis\n", @@ -154,7 +172,13 @@ "type": "parameter_input", "uuid": "b45e6bda-be0e-45e7-a9b1-17325a08dd76", "when": null, - "workflow_outputs": [] + "workflow_outputs": [ + { + "label": null, + "output_name": "output", + "uuid": "9a90c250-d96c-40eb-8899-8458190ba51f" + } + ] }, "5": { "annotation": "Forward reads as a single dataset in fastq format", @@ -235,7 +259,13 @@ "type": "parameter_input", "uuid": "b899a210-60c2-4e9e-8a34-e1bc82ef373d", "when": null, - "workflow_outputs": [] + "workflow_outputs": [ + { + "label": null, + "output_name": "output", + "uuid": "d1463002-620e-4349-917e-8b04f8683ccc" + } + ] }, "8": { "annotation": "Estimated genome size from contiging workflow", @@ -289,7 +319,13 @@ "type": "data_input", "uuid": "bc993517-ae23-417d-8eb1-891a127f544c", "when": null, - "workflow_outputs": [] + "workflow_outputs": [ + { + "label": null, + "output_name": "output", + "uuid": "0229d700-2a03-4279-a262-41f91d5592ef" + } + ] }, "10": { "annotation": "", @@ -795,7 +831,7 @@ "owner": "bgruening", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"find_and_replace\": [{\"__index__\": 0, \"find_pattern\": \"scaffold_[1-9]*\", \"replace_pattern\": {\"__class__\": \"ConnectedValue\"}, \"is_regex\": true, \"global\": true, \"caseinsensitive\": false, \"wholewords\": true, \"skip_first_line\": false, \"searchwhere\": {\"searchwhere_select\": \"line\", \"__current_case__\": 0}}], \"infile\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"find_and_replace\": [{\"__index__\": 0, \"find_pattern\": \"scaffold_[0-9]*\", \"replace_pattern\": {\"__class__\": \"ConnectedValue\"}, \"is_regex\": true, \"global\": true, \"caseinsensitive\": false, \"wholewords\": true, \"skip_first_line\": false, \"searchwhere\": {\"searchwhere_select\": \"line\", \"__current_case__\": 0}}], \"infile\": {\"__class__\": \"RuntimeValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "9.3+galaxy1", "type": "tool", "uuid": "4d5d4a06-e906-4c73-8159-050d49158dd3", @@ -1265,15 +1301,15 @@ "uuid": "c30b907f-05c9-4709-a939-b66f52daf6e4", "when": null, "workflow_outputs": [ - { - "label": "Busco Summary image", - "output_name": "summary_image", - "uuid": "cf7a5b93-9021-4029-8107-015787fa2ca5" - }, { "label": "Busco Summary", "output_name": "busco_sum", "uuid": "49589149-e16f-4a88-9d84-c1b06288021f" + }, + { + "label": "Busco Summary image", + "output_name": "summary_image", + "uuid": "cf7a5b93-9021-4029-8107-015787fa2ca5" } ] }, @@ -2184,6 +2220,6 @@ "tags": [ "VGP_curated" ], - "uuid": "9bbbb7d1-fa86-450f-9b22-f1495d2bccdf", - "version": 6 + "uuid": "dbe64df1-13fc-49fa-8a14-ead72f9d7ea1", + "version": 7 } \ No newline at end of file