From d5c7d8cbaf05734e8a15a804918904a4145cea64 Mon Sep 17 00:00:00 2001 From: Delphine-L Date: Mon, 30 Oct 2023 14:43:05 -0400 Subject: [PATCH] renaming files, removal of interlacing steps, clearer labels --- .../VGP-meryldb-creation-trio/.dockstore.yml | 8 - .../meryldb-creation-trio-tests.yml | 132 ---- .../.dockstore.yml | 7 + .../.workflowhub.yml | 0 .../CHANGELOG.md | 9 + .../README.md | 6 +- .../kmer-profiling-hifi-trio-VGP2-tests.yml | 73 ++ .../kmer-profiling-hifi-trio-VGP2.ga} | 626 ++++++------------ .../GenomeScope_Linear_plot_child.png | Bin .../GenomeScope_Linear_plot_maternal.png | Bin .../GenomeScope_Linear_plot_paternal.png | Bin .../test-data/GenomeScope_Log_plot_child.png | Bin .../GenomeScope_Log_plot_maternal.png | Bin .../GenomeScope_Log_plot_paternal.png | Bin ...omeScope_Transformed_linear_plot_child.png | Bin ...Scope_Transformed_linear_plot_maternal.png | Bin ...Scope_Transformed_linear_plot_paternal.png | Bin ...GenomeScope_Transformed_log_plot_child.png | Bin ...omeScope_Transformed_log_plot_maternal.png | Bin ...omeScope_Transformed_log_plot_paternal.png | Bin 20 files changed, 290 insertions(+), 571 deletions(-) delete mode 100644 workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/.dockstore.yml delete mode 100644 workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/meryldb-creation-trio-tests.yml create mode 100644 workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/.dockstore.yml rename workflows/VGP-assembly-v2/{VGP-meryldb-creation-trio => kmer-profiling-hifi-trio-VGP2}/.workflowhub.yml (100%) rename workflows/VGP-assembly-v2/{VGP-meryldb-creation-trio => kmer-profiling-hifi-trio-VGP2}/CHANGELOG.md (60%) rename workflows/VGP-assembly-v2/{VGP-meryldb-creation-trio => kmer-profiling-hifi-trio-VGP2}/README.md (79%) create mode 100644 workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/kmer-profiling-hifi-trio-VGP2-tests.yml rename workflows/VGP-assembly-v2/{VGP-meryldb-creation-trio/meryldb-creation-trio.ga => kmer-profiling-hifi-trio-VGP2/kmer-profiling-hifi-trio-VGP2.ga} (66%) rename workflows/VGP-assembly-v2/{VGP-meryldb-creation-trio => kmer-profiling-hifi-trio-VGP2}/test-data/GenomeScope_Linear_plot_child.png (100%) rename workflows/VGP-assembly-v2/{VGP-meryldb-creation-trio => kmer-profiling-hifi-trio-VGP2}/test-data/GenomeScope_Linear_plot_maternal.png (100%) rename workflows/VGP-assembly-v2/{VGP-meryldb-creation-trio => kmer-profiling-hifi-trio-VGP2}/test-data/GenomeScope_Linear_plot_paternal.png (100%) rename workflows/VGP-assembly-v2/{VGP-meryldb-creation-trio => kmer-profiling-hifi-trio-VGP2}/test-data/GenomeScope_Log_plot_child.png (100%) rename workflows/VGP-assembly-v2/{VGP-meryldb-creation-trio => kmer-profiling-hifi-trio-VGP2}/test-data/GenomeScope_Log_plot_maternal.png (100%) rename workflows/VGP-assembly-v2/{VGP-meryldb-creation-trio => kmer-profiling-hifi-trio-VGP2}/test-data/GenomeScope_Log_plot_paternal.png (100%) rename workflows/VGP-assembly-v2/{VGP-meryldb-creation-trio => kmer-profiling-hifi-trio-VGP2}/test-data/GenomeScope_Transformed_linear_plot_child.png (100%) rename workflows/VGP-assembly-v2/{VGP-meryldb-creation-trio => kmer-profiling-hifi-trio-VGP2}/test-data/GenomeScope_Transformed_linear_plot_maternal.png (100%) rename workflows/VGP-assembly-v2/{VGP-meryldb-creation-trio => kmer-profiling-hifi-trio-VGP2}/test-data/GenomeScope_Transformed_linear_plot_paternal.png (100%) rename workflows/VGP-assembly-v2/{VGP-meryldb-creation-trio => kmer-profiling-hifi-trio-VGP2}/test-data/GenomeScope_Transformed_log_plot_child.png (100%) rename workflows/VGP-assembly-v2/{VGP-meryldb-creation-trio => kmer-profiling-hifi-trio-VGP2}/test-data/GenomeScope_Transformed_log_plot_maternal.png (100%) rename workflows/VGP-assembly-v2/{VGP-meryldb-creation-trio => kmer-profiling-hifi-trio-VGP2}/test-data/GenomeScope_Transformed_log_plot_paternal.png (100%) diff --git a/workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/.dockstore.yml b/workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/.dockstore.yml deleted file mode 100644 index 2ce077b68..000000000 --- a/workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/.dockstore.yml +++ /dev/null @@ -1,8 +0,0 @@ -version: 1.2 -workflows: -- name: main - primaryDescriptorPath: /meryldb-creation-trio.ga - subclass: Galaxy - testParameterFiles: - - /meryldb-creation-trio-tests.yml - publish: true diff --git a/workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/meryldb-creation-trio-tests.yml b/workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/meryldb-creation-trio-tests.yml deleted file mode 100644 index 05fafc37f..000000000 --- a/workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/meryldb-creation-trio-tests.yml +++ /dev/null @@ -1,132 +0,0 @@ -- doc: Test outline for meryl_database_creation_trios.ga - job: - Collection of Paired Reads - Maternal: - class: Collection - collection_type: 'list:paired' - elements: - - class: Collection - type: paired - identifier: paired_maternal - elements: - - identifier: forward - class: File - location: https://zenodo.org/record/6603774/files/paternal.fastq?download=1 - filetype: fastqsanger - - identifier: reverse - class: File - location: https://zenodo.org/record/6603774/files/paternal.fastq?download=1 - filetype: fastqsanger - Collection of Paired Reads - Paternal: - class: Collection - collection_type: 'list:paired' - elements: - - class: Collection - type: paired - identifier: paired_paternal - elements: - - identifier: forward - class: File - location: https://zenodo.org/record/6603774/files/maternal.fastq?download=1 - filetype: fastqsanger - - identifier: reverse - class: File - location: https://zenodo.org/record/6603774/files/maternal.fastq?download=1 - filetype: fastqsanger - Pacbio Hifi reads: - class: Collection - collection_type: list - elements: - - class: File - identifier: pacbio_dataset - location: https://zenodo.org/record/6603774/files/child.fastq?download=1 - filetype: fastqsanger - 'K-mer length ': 9 - Ploidy: 1 - outputs: - GenomeScope linear plot (maternal): - class: File - file: test-data/GenomeScope_Linear_plot_maternal.png - compare: sim_size - delta: 15000 - GenomeScope log plot (maternal): - class: File - file: test-data/GenomeScope_Log_plot_maternal.png - compare: sim_size - delta: 15000 - GenomeScope transformed linear plot (maternal): - class: File - file: test-data/GenomeScope_Transformed_linear_plot_maternal.png - compare: sim_size - delta: 15000 - GenomeScope transformed log plot (paternal): - class: File - file: test-data/GenomeScope_Transformed_linear_plot_paternal.png - compare: sim_size - delta: 15000 - GenomeScope linear plot (paternal): - class: File - file: test-data/GenomeScope_Linear_plot_paternal.png - compare: sim_size - delta: 15000 - GenomeScope log plot (paternal): - class: File - file: test-data/GenomeScope_Log_plot_paternal.png - compare: sim_size - delta: 15000 - GenomeScope transformed linear plot (paternal): - class: File - file: test-data/GenomeScope_Transformed_linear_plot_paternal.png - compare: sim_size - delta: 15000 - GenomeScope transformed log plot (paternal): - class: File - file: test-data/GenomeScope_Transformed_linear_plot_paternal.png - compare: sim_size - delta: 15000 - GenomeScope linear plot (child): - class: File - file: test-data/GenomeScope_Linear_plot_child.png - compare: sim_size - delta: 15000 - GenomeScope log plot (child): - class: File - file: test-data/GenomeScope_Log_plot_child.png - compare: sim_size - delta: 15000 - GenomeScope transformed linear plot (child): - class: File - file: test-data/GenomeScope_Transformed_linear_plot_child.png - compare: sim_size - delta: 15000 - GenomeScope transformed log plot (child): - class: File - file: test-data/GenomeScope_Transformed_linear_plot_child.png - compare: sim_size - delta: 15000 - GenomeScope summary (child): - asserts: - has_text: - text: '39,419 bp' - has_text: - text: '43,763 bp' - GenomeScope model (child): - asserts: - has_text: - text: '1.212e+01' - has_text: - text: '3.165e-01' - Meryl read-db.meryldb: - asserts: - has_size: - value: 205051 - delta: 1000 - Meryl pat.meryldb: - asserts: - has_size: - value: 40338 - delta: 1000 - Meryl mat.meryldb: - asserts: - has_size: - value: 49534 - delta: 1000 diff --git a/workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/.dockstore.yml b/workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/.dockstore.yml new file mode 100644 index 000000000..9e540d8cc --- /dev/null +++ b/workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/.dockstore.yml @@ -0,0 +1,7 @@ +version: 1.2 +workflows: +- name: main + primaryDescriptorPath: /kmer-profiling-hifi-trio-VGP2.ga + subclass: Galaxy + testParameterFiles: + - /kmer-profiling-hifi-trio-VGP2-tests.yml diff --git a/workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/.workflowhub.yml b/workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/.workflowhub.yml similarity index 100% rename from workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/.workflowhub.yml rename to workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/.workflowhub.yml diff --git a/workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/CHANGELOG.md b/workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/CHANGELOG.md similarity index 60% rename from workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/CHANGELOG.md rename to workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/CHANGELOG.md index aa79d8016..0bc7ef422 100644 --- a/workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/CHANGELOG.md +++ b/workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/CHANGELOG.md @@ -6,6 +6,15 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ## [Unreleased] +## [0.1] - 2023-10-30 + +### Added +- Clearer labels + +### Removed +- Interlacing step that was unneccessary +- Need got paired list inputs for the Illumna parental reads. a Flat list is enough +- Unnecessary workflow intputs ## [0.1] - 2021-08-26 ### Added diff --git a/workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/README.md b/workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/README.md similarity index 79% rename from workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/README.md rename to workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/README.md index c49519361..3893ef5f5 100644 --- a/workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/README.md +++ b/workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/README.md @@ -4,9 +4,9 @@ This workflow collects the metrics on the properties of the genome under conside ### Inputs -- Collection of Hifi long reads in FASTQ format -- Paternal short-read Illumina sequencing reads in FASTQ format -- Maternal short-read Illumina sequencing reads in FASTQ format +- Collection of Hifi long reads [fastq] (Collection) +- Paternal short-read Illumina sequencing reads [fastq] (Collection) +- Maternal short-read Illumina sequencing reads [fastq] (Collection) ### Outputs diff --git a/workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/kmer-profiling-hifi-trio-VGP2-tests.yml b/workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/kmer-profiling-hifi-trio-VGP2-tests.yml new file mode 100644 index 000000000..1d9044cfb --- /dev/null +++ b/workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/kmer-profiling-hifi-trio-VGP2-tests.yml @@ -0,0 +1,73 @@ +- doc: Test outline for kmer-profiling-hifi-trio-VGP2.ga + job: + Maternal reads: + class: Collection + collection_type: list + elements: + - class: File + identifier: forward + location: https://zenodo.org/record/6603774/files/paternal.fastq?download=1 + filetype: fastqsanger + - class: File + identifier: reverse + location: https://zenodo.org/record/6603774/files/paternal.fastq?download=1 + filetype: fastqsanger + Paternal reads: + class: Collection + collection_type: list + elements: + - class: File + identifier: forward + location: https://zenodo.org/record/6603774/files/maternal.fastq?download=1 + filetype: fastqsanger + - class: File + identifier: reverse + location: https://zenodo.org/record/6603774/files/maternal.fastq?download=1 + filetype: fastqsanger + Pacbio Hifi reads: + class: Collection + collection_type: list + elements: + - class: File + identifier: pacbio_dataset + location: https://zenodo.org/record/6603774/files/child.fastq?download=1 + filetype: fastqsanger + 'K-mer length': 9 + Ploidy: 1 + outputs: + GenomeScope linear plot (maternal): + class: File + file: test-data/GenomeScope_Linear_plot_maternal.png + compare: sim_size + delta: 15000 + GenomeScope linear plot (paternal): + class: File + file: test-data/GenomeScope_Linear_plot_paternal.png + compare: sim_size + delta: 15000 + GenomeScope linear plot (child): + class: File + file: test-data/GenomeScope_Linear_plot_child.png + compare: sim_size + delta: 15000 + GenomeScope summary (child): + asserts: + has_text: + text: '39,419 bp' + has_text: + text: '43,763 bp' + 'Meryl database : Child': + asserts: + has_size: + value: 205051 + delta: 1000 + 'Meryl database : paternal': + asserts: + has_size: + value: 40338 + delta: 1000 + 'Meryl database : maternal': + asserts: + has_size: + value: 49534 + delta: 1000 diff --git a/workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/meryldb-creation-trio.ga b/workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/kmer-profiling-hifi-trio-VGP2.ga similarity index 66% rename from workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/meryldb-creation-trio.ga rename to workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/kmer-profiling-hifi-trio-VGP2.ga index 91c7db771..f919c1377 100644 --- a/workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/meryldb-creation-trio.ga +++ b/workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/kmer-profiling-hifi-trio-VGP2.ga @@ -12,148 +12,128 @@ "name": "Galaxy" } ], - "release": "0.1", "format-version": "0.1", "license": "CC-BY-4.0", - "name": "Quality Evaluation For Trio Assembly", + "release": "0.1.1", + "name": "kmer-profiling-hifi-trio-VGP2", "steps": { "0": { - "annotation": "K-mer length used to calculate k-mer spectra. For a human genome, the best k-mer size is k=21 for both haploid (3.1G) or diploid (6.2G).", + "annotation": "", "content_id": null, "errors": null, "id": 0, "input_connections": {}, "inputs": [ { - "description": "K-mer length used to calculate k-mer spectra. 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"GenomeScope linear plot (paternal)", "output_name": "linear_plot", - "uuid": "cbeb5adf-2a3f-4764-ba4b-c5bddce97464" + "uuid": "bba131ee-0c54-404a-87f8-067faebea46b" }, { "label": "GenomeScope transformed log plot (paternal)", "output_name": "transformed_log_plot", - "uuid": "2ec62287-270e-4dae-be6a-23c7693b3358" + "uuid": "eddc8909-df19-48c2-8406-d6bc784ceb8b" + }, + { + "label": "GenomeScope log plot (paternal)", + "output_name": "log_plot", + "uuid": "cc24ee83-d9ee-4759-9353-1be2e7dbb253" + }, + { + "label": "GenomeScope transformed linear plot (paternal)", + "output_name": "transformed_linear_plot", + "uuid": "2b73811b-e91e-49c6-a122-5065977f9f0e" } ] }, - "16": { + "14": { "annotation": "", "content_id": "toolshed.g2.bx.psu.edu/repos/iuc/genomescope/genomescope/2.0+galaxy1", "errors": null, - "id": 16, + "id": 14, "input_connections": { "input": { - "id": 14, + "id": 12, "output_name": "read_db_hist" }, "kmer_length": { - "id": 0, + "id": 3, "output_name": "output" }, "ploidy": { @@ -1110,12 +887,7 @@ "output_name": "output" } }, - "inputs": [ - { - "description": "runtime parameter for tool GenomeScope", - "name": "input" - } - ], + "inputs": [], "label": "Genomescope on maternal haplotype", "name": "GenomeScope", "outputs": [ @@ -1145,14 +917,8 @@ } ], "position": { - "bottom": 1624.0625, - "height": 550.59375, - "left": 1153.484375, - "right": 1353.484375, - "top": 1073.46875, - "width": 200, - "x": 1153.484375, - "y": 1073.46875 + "left": 1841.77734375, + "top": 1187.106299999974 }, "post_job_actions": { "HideDatasetActionmodel": { @@ -1215,35 +981,39 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"advanced_options\": {\"topology\": null, \"initial_repetitiveness\": null, \"initial_heterozygosities\": \"\", \"transform_exp\": null, \"testing\": \"false\", \"true_params\": \"\", \"trace_flag\": \"false\", \"num_rounds\": null}, \"input\": {\"__class__\": \"RuntimeValue\"}, \"kmer_length\": {\"__class__\": \"ConnectedValue\"}, 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"87497ba1-5c23-4852-9e2f-0bd78dc86753", + "when": null, "workflow_outputs": [ + { + "label": "GenomeScope log plot (maternal)", + "output_name": "log_plot", + "uuid": "e2ef48ab-bbb8-4a89-8d10-4de7998db481" + }, { "label": "GenomeScope transformed log plot (maternal)", "output_name": "transformed_log_plot", - "uuid": "ca60f7ce-a7e2-4368-8b03-62b32156d771" + "uuid": "ebe91290-a02b-498d-adb6-75fab0739fbf" }, { "label": "GenomeScope transformed linear plot (maternal)", "output_name": "transformed_linear_plot", - "uuid": "b52b3f93-8aaa-49dd-b420-d14001b8458d" + "uuid": "7ecb789d-57e3-40f2-81ff-f853b444609b" }, { "label": "GenomeScope linear plot (maternal)", "output_name": "linear_plot", - "uuid": "1e6c2417-b969-4c11-81c3-be9ef11c650c" - }, - { - "label": "GenomeScope log plot (maternal)", - "output_name": "log_plot", - "uuid": "4d8cff3d-d968-467c-94a0-95f3110f2ac5" + "uuid": "ed208558-8a6f-4405-bd9c-7e6343e9f71d" } ] } }, - "tags": [], - "uuid": "8da74177-a675-42a2-a187-2514ea64d6bd", - "version": 4 -} + "tags": [ + "Reviewed", + "VGP" + ], + "uuid": "af01815b-5b66-4578-ade7-6e2caed0c19a", + "version": 9 +} \ No newline at end of file diff --git a/workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/test-data/GenomeScope_Linear_plot_child.png b/workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/test-data/GenomeScope_Linear_plot_child.png similarity index 100% rename from workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/test-data/GenomeScope_Linear_plot_child.png rename to workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/test-data/GenomeScope_Linear_plot_child.png diff --git a/workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/test-data/GenomeScope_Linear_plot_maternal.png b/workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/test-data/GenomeScope_Linear_plot_maternal.png similarity index 100% rename from workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/test-data/GenomeScope_Linear_plot_maternal.png rename to workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/test-data/GenomeScope_Linear_plot_maternal.png diff --git a/workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/test-data/GenomeScope_Linear_plot_paternal.png b/workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/test-data/GenomeScope_Linear_plot_paternal.png similarity index 100% rename from workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/test-data/GenomeScope_Linear_plot_paternal.png rename to workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/test-data/GenomeScope_Linear_plot_paternal.png diff --git a/workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/test-data/GenomeScope_Log_plot_child.png b/workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/test-data/GenomeScope_Log_plot_child.png similarity index 100% rename from workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/test-data/GenomeScope_Log_plot_child.png rename to workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/test-data/GenomeScope_Log_plot_child.png diff --git a/workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/test-data/GenomeScope_Log_plot_maternal.png b/workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/test-data/GenomeScope_Log_plot_maternal.png similarity index 100% rename from workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/test-data/GenomeScope_Log_plot_maternal.png rename to workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/test-data/GenomeScope_Log_plot_maternal.png diff --git a/workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/test-data/GenomeScope_Log_plot_paternal.png b/workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/test-data/GenomeScope_Log_plot_paternal.png similarity index 100% rename from workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/test-data/GenomeScope_Log_plot_paternal.png rename to workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/test-data/GenomeScope_Log_plot_paternal.png diff --git a/workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/test-data/GenomeScope_Transformed_linear_plot_child.png b/workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/test-data/GenomeScope_Transformed_linear_plot_child.png similarity index 100% rename from workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/test-data/GenomeScope_Transformed_linear_plot_child.png rename to workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/test-data/GenomeScope_Transformed_linear_plot_child.png diff --git a/workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/test-data/GenomeScope_Transformed_linear_plot_maternal.png b/workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/test-data/GenomeScope_Transformed_linear_plot_maternal.png similarity index 100% rename from workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/test-data/GenomeScope_Transformed_linear_plot_maternal.png rename to workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/test-data/GenomeScope_Transformed_linear_plot_maternal.png diff --git a/workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/test-data/GenomeScope_Transformed_linear_plot_paternal.png b/workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/test-data/GenomeScope_Transformed_linear_plot_paternal.png similarity index 100% rename from workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/test-data/GenomeScope_Transformed_linear_plot_paternal.png rename to workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/test-data/GenomeScope_Transformed_linear_plot_paternal.png diff --git a/workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/test-data/GenomeScope_Transformed_log_plot_child.png b/workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/test-data/GenomeScope_Transformed_log_plot_child.png similarity index 100% rename from workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/test-data/GenomeScope_Transformed_log_plot_child.png rename to workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/test-data/GenomeScope_Transformed_log_plot_child.png diff --git a/workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/test-data/GenomeScope_Transformed_log_plot_maternal.png b/workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/test-data/GenomeScope_Transformed_log_plot_maternal.png similarity index 100% rename from workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/test-data/GenomeScope_Transformed_log_plot_maternal.png rename to workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/test-data/GenomeScope_Transformed_log_plot_maternal.png diff --git a/workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/test-data/GenomeScope_Transformed_log_plot_paternal.png b/workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/test-data/GenomeScope_Transformed_log_plot_paternal.png similarity index 100% rename from workflows/VGP-assembly-v2/VGP-meryldb-creation-trio/test-data/GenomeScope_Transformed_log_plot_paternal.png rename to workflows/VGP-assembly-v2/kmer-profiling-hifi-trio-VGP2/test-data/GenomeScope_Transformed_log_plot_paternal.png