From c3fce37655e24325abdf6603106649fd4dba1dcf Mon Sep 17 00:00:00 2001 From: Delphine Lariviere Date: Thu, 23 May 2024 10:56:25 -0400 Subject: [PATCH] Change of path creation subworkflow that was causing a // to appear when no haplotype was specified --- .../Galaxy-Workflow-Export_WF1-3_assembly.ga | 516 ++++++++--------- ...laxy-Workflow-Export_WF1-4_Assembly_HiC.ga | 484 ++++++++-------- ...axy-Workflow-Export_WF2-5_Assembly_Trio.ga | 518 +++++++++--------- .../Export-WF6/Export_WF6_Purgedups.ga | 4 +- .../Export_WF6b_Purgedups_Single_haplotype.ga | 516 ++++++++--------- ...Workflow-Export_WF7_Scaffolding_Bionano.ga | 514 ++++++++--------- ...axy-Workflow-Export_WF8_Scaffolding_HiC.ga | 518 +++++++++--------- 7 files changed, 1535 insertions(+), 1535 deletions(-) diff --git a/workflows/VGP-assembly-v2/Export-WF1-3/Galaxy-Workflow-Export_WF1-3_assembly.ga b/workflows/VGP-assembly-v2/Export-WF1-3/Galaxy-Workflow-Export_WF1-3_assembly.ga index 9c39ab633..74ea2137d 100644 --- a/workflows/VGP-assembly-v2/Export-WF1-3/Galaxy-Workflow-Export_WF1-3_assembly.ga +++ b/workflows/VGP-assembly-v2/Export-WF1-3/Galaxy-Workflow-Export_WF1-3_assembly.ga @@ -1764,14 +1764,14 @@ "name": "Input parameter", "outputs": [], "position": { - "left": 0, + "left": 0.0, "top": 1412.1079716128102 }, "tool_id": null, "tool_state": "{\"parameter_type\": \"text\", \"optional\": false}", "tool_version": null, "type": "parameter_input", - "uuid": "c38f6049-408f-40e3-9737-7a8c873d7da1", + "uuid": "cddc62f0-67cd-40a1-93f9-06bf744fd31f", "when": null, "workflow_outputs": [] }, @@ -1791,14 +1791,14 @@ "name": "Input parameter", "outputs": [], "position": { - "left": 3.0251037183103424, + "left": 3.025103718310447, "top": 1524.9876379842785 }, "tool_id": null, "tool_state": "{\"parameter_type\": \"text\", \"optional\": false}", "tool_version": null, "type": "parameter_input", - "uuid": "df2514d2-74f2-4579-a18d-64de22d480ba", + "uuid": "f4292886-20c3-4625-9806-b5bdad22f129", "when": null, "workflow_outputs": [] }, @@ -1818,14 +1818,14 @@ "name": "Input parameter", "outputs": [], "position": { - "left": 5.5771931247935616, - "top": 1605.2654481521888 + "left": 5.577193124793666, + "top": 1605.265448152189 }, "tool_id": null, "tool_state": "{\"parameter_type\": \"text\", \"optional\": false}", "tool_version": null, "type": "parameter_input", - "uuid": "7679e681-5422-4cad-a0e0-3554db0551b4", + "uuid": "79bbef52-2d34-4bb0-a4ea-bbce21d4528b", "when": null, "workflow_outputs": [] }, @@ -1845,14 +1845,14 @@ "name": "Input parameter", "outputs": [], "position": { - "left": 3.910500647239937, + "left": 3.910500647240042, "top": 1708.7029117132897 }, "tool_id": null, "tool_state": "{\"parameter_type\": \"text\", \"optional\": false}", "tool_version": null, "type": "parameter_input", - "uuid": "04c39f38-970e-451b-a650-3bb630d8d4f8", + "uuid": "1f0a2e32-91da-41f0-b487-fa05c3e823be", "when": null, "workflow_outputs": [] }, @@ -1886,7 +1886,7 @@ ], "position": { "left": 517.0355871896256, - "top": 1166.2550557781217 + "top": 1166.255055778122 }, "post_job_actions": { "RenameDatasetActionout1": { @@ -1907,7 +1907,7 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"species/\"}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/assembly_vgp_\"}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 6, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_2.0/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "b86485d7-063e-4c28-ba5d-cfd34922cf28", + "uuid": "eda5285d-441a-4745-9786-72c739bce34a", "when": null, "workflow_outputs": [ { @@ -1938,8 +1938,8 @@ } ], "position": { - "left": 888.8403252145398, - "top": 1244.1872541863545 + "left": 901.6183860897531, + "top": 1245.813577600024 }, "post_job_actions": { "HideDatasetActionout1": { @@ -1958,7 +1958,7 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"evaluation/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "6582a456-fdb0-4e1d-a717-858d0ff20d27", + "uuid": "26878fd9-992c-4ecc-9e60-9d374703f802", "when": null, "workflow_outputs": [ { @@ -1989,7 +1989,7 @@ } ], "position": { - "left": 890.2647477831423, + "left": 890.2647477831424, "top": 1548.1994901006497 }, "post_job_actions": { @@ -2016,7 +2016,7 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"intermediates/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "d7ab3988-5f01-499d-8290-274fef8c5dec", + "uuid": "ce288db7-4bd7-45d9-83e5-6927a76656a3", "when": null, "workflow_outputs": [ { @@ -2051,8 +2051,8 @@ } ], "position": { - "left": 1271.5669465063231, - "top": 1060.7515977265828 + "left": 1263.6733559531035, + "top": 1049.7775118609338 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2071,7 +2071,7 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "57658471-57f2-4eae-8f84-c9f1f4357560", + "uuid": "5b7f7472-089c-4154-a22c-53b7d3578e85", "when": null, "workflow_outputs": [ { @@ -2094,14 +2094,10 @@ "components_2|param_type|component_value": { "id": 1, "output_name": "output" - }, - "components_4|param_type|component_value": { - "id": 3, - "output_name": "output" } }, "inputs": [], - "label": "Genomescope", + "label": "Busco c", "name": "Compose text parameter value", "outputs": [ { @@ -2110,21 +2106,14 @@ } ], "position": { - "left": 2071.028743964346, - "top": 1316.584827816368 + "left": 1825.5251219377596, + "top": 59.95290260356501 }, "post_job_actions": { "HideDatasetActionout1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out1" - }, - "RenameDatasetActionout1": { - "action_arguments": { - "newname": "Genomescope path" - }, - "action_type": "RenameDatasetAction", - "output_name": "out1" } }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1", @@ -2134,16 +2123,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"genomescope/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_genomescope_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/c/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "f0974de0-9a40-4e2a-afc8-268bb3a21dd1", + "uuid": "9ce17c38-2e8c-4662-a4c3-049d6a12f435", "when": null, "workflow_outputs": [ { - "label": "Genomescope path", + "label": "Busco c path", "output_name": "out1", - "uuid": "ea782ff8-9dcf-428c-8661-0f0f00f3231f" + "uuid": "ecf1ee1e-5613-44b4-992f-ed37ecf48548" } ] }, @@ -2158,12 +2147,12 @@ "output_name": "out1" }, "components_2|param_type|component_value": { - "id": 2, + "id": 1, "output_name": "output" } }, "inputs": [], - "label": "Merqury", + "label": "gfastats c ", "name": "Compose text parameter value", "outputs": [ { @@ -2172,8 +2161,8 @@ } ], "position": { - "left": 2408.667576170503, - "top": 1325.4738239975713 + "left": 1828.2518626642654, + "top": 392.1025591031771 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2183,7 +2172,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Merqury c path" + "newname": "gfastats c path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2196,16 +2185,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"merqury/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/c/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "8541357f-1955-4078-b4a6-caf441401b66", + "uuid": "6b1a368d-8e7d-4a98-bdfe-7f72d91e7506", "when": null, "workflow_outputs": [ { - "label": "Merqury c path", + "label": "gfastats c path", "output_name": "out1", - "uuid": "080250d0-9459-42f6-bc7b-c7e4534cfdbc" + "uuid": "ff081fcb-2fe0-43d7-87d3-15ae5360cd45" } ] }, @@ -2222,10 +2211,14 @@ "components_2|param_type|component_value": { "id": 1, "output_name": "output" + }, + "components_4|param_type|component_value": { + "id": 3, + "output_name": "output" } }, "inputs": [], - "label": null, + "label": "Genomescope", "name": "Compose text parameter value", "outputs": [ { @@ -2234,8 +2227,8 @@ } ], "position": { - "left": 2676.2542643118272, - "top": 1327.8001744231776 + "left": 2009.9695164575119, + "top": 1334.8267703356214 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2245,7 +2238,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Merqury p path" + "newname": "Genomescope path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2258,16 +2251,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"merqury/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"genomescope/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_genomescope_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "1b2abf5e-d56e-499a-83da-d503a34f981c", + "uuid": "b8fd3f16-e4e2-497d-bec8-3a0ca5716693", "when": null, "workflow_outputs": [ { - "label": "Merqury p path", + "label": "Genomescope path", "output_name": "out1", - "uuid": "2de757c6-b4ee-44a5-ae36-46b97d7713d8" + "uuid": "ea782ff8-9dcf-428c-8661-0f0f00f3231f" } ] }, @@ -2278,16 +2271,16 @@ "id": 11, "input_connections": { "components_0|param_type|component_value": { - "id": 6, + "id": 5, "output_name": "out1" }, - "components_1|param_type|component_value": { - "id": 3, + "components_2|param_type|component_value": { + "id": 2, "output_name": "output" } }, "inputs": [], - "label": "Intermediate haplotype", + "label": "Merqury", "name": "Compose text parameter value", "outputs": [ { @@ -2296,8 +2289,8 @@ } ], "position": { - "left": 1244.8133244797375, - "top": 1748.2516888238306 + "left": 2305.0307369613033, + "top": 1371.303115252299 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2307,7 +2300,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Intermediate haplotype path" + "newname": "Merqury c path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2320,16 +2313,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"merqury/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "d96ad636-0a3d-4151-8b35-bfeea8272ecc", + "uuid": "d225ea61-7f06-4ea5-81da-b216ecca77a3", "when": null, "workflow_outputs": [ { - "label": "Intermediate haplotype path", + "label": "Merqury c path", "output_name": "out1", - "uuid": "863497a1-3a47-4549-bb55-bffad3883a39" + "uuid": "080250d0-9459-42f6-bc7b-c7e4534cfdbc" } ] }, @@ -2340,7 +2333,7 @@ "id": 12, "input_connections": { "components_0|param_type|component_value": { - "id": 6, + "id": 5, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -2349,7 +2342,7 @@ } }, "inputs": [], - "label": "Meryl", + "label": null, "name": "Compose text parameter value", "outputs": [ { @@ -2358,8 +2351,8 @@ } ], "position": { - "left": 1682.7821109186366, - "top": 2734.84891509482 + "left": 2540.3688447995355, + "top": 1498.359788467742 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2369,7 +2362,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Meryl Path" + "newname": "Merqury p path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2382,16 +2375,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"meryl/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"merqury/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "998fae4c-35aa-4369-8c1b-960614467da3", + "uuid": "aaa79a1e-c3a6-42a8-837b-7b9187a5f29f", "when": null, "workflow_outputs": [ { - "label": "Meryl Path", + "label": "Merqury p path", "output_name": "out1", - "uuid": "272b4efc-7a5c-480c-9ec6-660d9a8b89f2" + "uuid": "2de757c6-b4ee-44a5-ae36-46b97d7713d8" } ] }, @@ -2402,16 +2395,16 @@ "id": 13, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, - "components_2|param_type|component_value": { - "id": 1, + "components_1|param_type|component_value": { + "id": 3, "output_name": "output" } }, "inputs": [], - "label": "Busco c", + "label": "Intermediate haplotype", "name": "Compose text parameter value", "outputs": [ { @@ -2420,14 +2413,21 @@ } ], "position": { - "left": 1825.5251219377596, - "top": 59.95290260356503 + "left": 1244.8133244797377, + "top": 1748.2516888238306 }, "post_job_actions": { "HideDatasetActionout1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out1" + }, + "RenameDatasetActionout1": { + "action_arguments": { + "newname": "Intermediate haplotype path" + }, + "action_type": "RenameDatasetAction", + "output_name": "out1" } }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1", @@ -2437,16 +2437,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/c/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "ee07c83e-5711-4f4f-81ec-9e0c2105d6f7", + "uuid": "810e6d95-01ee-45aa-8cd7-d6f0e9d9384a", "when": null, "workflow_outputs": [ { - "label": "Busco c path", + "label": "Intermediate haplotype path", "output_name": "out1", - "uuid": "ecf1ee1e-5613-44b4-992f-ed37ecf48548" + "uuid": "863497a1-3a47-4549-bb55-bffad3883a39" } ] }, @@ -2457,7 +2457,7 @@ "id": 14, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -2466,7 +2466,7 @@ } }, "inputs": [], - "label": "gfastats c ", + "label": "HIfiasm", "name": "Compose text parameter value", "outputs": [ { @@ -2475,8 +2475,8 @@ } ], "position": { - "left": 1847.105149048301, - "top": 376.5848460358178 + "left": 1670.4414723317645, + "top": 1968.0696604856598 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2486,7 +2486,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats c path" + "newname": "HIfiasm Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2499,16 +2499,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/c/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"hifiasm/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "7ff27452-4035-4210-848c-12a861351e01", + "uuid": "3b29ad30-1516-4e7c-b352-a0fb754a22a0", "when": null, "workflow_outputs": [ { - "label": "gfastats c path", + "label": "HIfiasm Path", "output_name": "out1", - "uuid": "ff081fcb-2fe0-43d7-87d3-15ae5360cd45" + "uuid": "ab6b40b7-c5e9-401d-b691-d12d86692ea4" } ] }, @@ -2519,7 +2519,7 @@ "id": 15, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -2528,7 +2528,7 @@ } }, "inputs": [], - "label": "Busco s2", + "label": "purge_dups p1", "name": "Compose text parameter value", "outputs": [ { @@ -2537,8 +2537,8 @@ } ], "position": { - "left": 2053.2855507507265, - "top": 77.99109148095542 + "left": 1686.4395901180555, + "top": 2214.7096632841826 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2548,7 +2548,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Busco s2 Path" + "newname": "purge_dups Path p1" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2561,16 +2561,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/p1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "b717aa49-1586-47a7-bae4-1acafdd708d9", + "uuid": "635e844c-1cfb-4c28-b6e1-b9b4c7a6d32f", "when": null, "workflow_outputs": [ { - "label": "Busco s2 Path", + "label": "purge_dups Path p1", "output_name": "out1", - "uuid": "2545849e-3a9f-4b93-acfd-9bbda9b11002" + "uuid": "ee7b6407-c087-4eed-a0d8-6019240ffcf2" } ] }, @@ -2581,7 +2581,7 @@ "id": 16, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -2590,7 +2590,7 @@ } }, "inputs": [], - "label": "gfastats s1", + "label": "purge_dups p2", "name": "Compose text parameter value", "outputs": [ { @@ -2599,8 +2599,8 @@ } ], "position": { - "left": 2092.0703863384133, - "top": 378.8244263325762 + "left": 1991.8492322053903, + "top": 2212.3456427728447 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2610,7 +2610,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats s1 path" + "newname": "purge_dups Path p2" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2623,16 +2623,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/p2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "d8714313-14f5-4bfa-9916-13ba9f6cc153", + "uuid": "a3d03bc2-df68-4df8-b02d-7c0413855a70", "when": null, "workflow_outputs": [ { - "label": "gfastats s1 path", + "label": "purge_dups Path p2", "output_name": "out1", - "uuid": "3f789e73-69d4-4d1b-9f8b-986057199d0f" + "uuid": "c2f04aec-0bd9-4413-8a0e-5a92ac84a9bc" } ] }, @@ -2643,20 +2643,16 @@ "id": 17, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, "components_2|param_type|component_value": { "id": 1, "output_name": "output" - }, - "components_4|param_type|component_value": { - "id": 3, - "output_name": "output" } }, "inputs": [], - "label": "Pretext s1", + "label": "Meryl", "name": "Compose text parameter value", "outputs": [ { @@ -2665,8 +2661,8 @@ } ], "position": { - "left": 1893.8411346476478, - "top": 1007.2273184880099 + "left": 1682.7821109186366, + "top": 2734.8489150948203 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2676,7 +2672,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Pretext s1 path" + "newname": "Meryl Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2689,16 +2685,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"pretext/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"meryl/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "9b865ce1-fc13-4fc0-a7ca-c34b32f5268e", + "uuid": "0a522d26-d0f7-49bf-b250-5a7c48e5c62f", "when": null, "workflow_outputs": [ { - "label": "Pretext s1 path", + "label": "Meryl Path", "output_name": "out1", - "uuid": "36a3f1e9-402e-48cd-b70f-80901b5f3ff0" + "uuid": "272b4efc-7a5c-480c-9ec6-660d9a8b89f2" } ] }, @@ -2718,7 +2714,7 @@ } }, "inputs": [], - "label": "Busco s1", + "label": "Busco s2", "name": "Compose text parameter value", "outputs": [ { @@ -2727,8 +2723,8 @@ } ], "position": { - "left": 2304.3967549834692, - "top": 66.89734261967101 + "left": 2053.2855507507265, + "top": 77.99109148095545 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2738,7 +2734,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Busco s1 Path" + "newname": "Busco s2 Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2754,13 +2750,13 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "63b266bd-78b7-4154-9e3d-94423dc670b2", + "uuid": "afb88aae-5c8a-4d01-8f9b-141987bc642e", "when": null, "workflow_outputs": [ { - "label": "Busco s1 Path", + "label": "Busco s2 Path", "output_name": "out1", - "uuid": "edd1d288-7361-4f2e-9702-b4a548d7c4b1" + "uuid": "2545849e-3a9f-4b93-acfd-9bbda9b11002" } ] }, @@ -2784,7 +2780,7 @@ } }, "inputs": [], - "label": "Pretext s2", + "label": "Pretext s1", "name": "Compose text parameter value", "outputs": [ { @@ -2793,8 +2789,8 @@ } ], "position": { - "left": 2137.087731254458, - "top": 1010.300119764829 + "left": 1913.9057330959263, + "top": 901.6138446229584 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2804,7 +2800,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Pretext s2 path" + "newname": "Pretext s1 path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2820,13 +2816,13 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"pretext/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "960f659c-abbf-4310-af81-316ebf3d72a2", + "uuid": "90ca18a4-4744-4d59-a84d-c8d84b1b417a", "when": null, "workflow_outputs": [ { - "label": "Pretext s2 path", + "label": "Pretext s1 path", "output_name": "out1", - "uuid": "18fe7a6c-b603-448f-8448-e5c422aeb6b7" + "uuid": "36a3f1e9-402e-48cd-b70f-80901b5f3ff0" } ] }, @@ -2846,7 +2842,7 @@ } }, "inputs": [], - "label": "gfastats s2", + "label": "gfastats s1", "name": "Compose text parameter value", "outputs": [ { @@ -2855,8 +2851,8 @@ } ], "position": { - "left": 2341.810030403245, - "top": 380.612619764829 + "left": 2092.0703863384133, + "top": 378.8244263325764 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2866,7 +2862,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats s2 path" + "newname": "gfastats s1 path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2879,16 +2875,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "a33409a7-f413-4804-a365-bae779c7ef0f", + "uuid": "b6b85d13-e1ca-4f16-b051-739cc18e79b1", "when": null, "workflow_outputs": [ { - "label": "gfastats s2 path", + "label": "gfastats s1 path", "output_name": "out1", - "uuid": "a2a42ac1-ecbc-4371-986c-400faa618d46" + "uuid": "3f789e73-69d4-4d1b-9f8b-986057199d0f" } ] }, @@ -2908,7 +2904,7 @@ } }, "inputs": [], - "label": "Busco p1", + "label": "Busco s1", "name": "Compose text parameter value", "outputs": [ { @@ -2917,8 +2913,8 @@ } ], "position": { - "left": 2579.4140634606147, - "top": 70.59525890676582 + "left": 2304.3967549834692, + "top": 66.89734261967101 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2928,7 +2924,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Busco p1 Path" + "newname": "Busco s1 Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2944,13 +2940,13 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "2c5eef41-840a-4c44-8d26-b9f31eac6dfa", + "uuid": "a52a42d9-7ed0-4328-8b11-a5ae8e5f04a7", "when": null, "workflow_outputs": [ { - "label": "Busco p1 Path", + "label": "Busco s1 Path", "output_name": "out1", - "uuid": "941dea07-456e-4f6e-b7ec-5aa1231de628" + "uuid": "edd1d288-7361-4f2e-9702-b4a548d7c4b1" } ] }, @@ -2967,10 +2963,14 @@ "components_2|param_type|component_value": { "id": 1, "output_name": "output" + }, + "components_4|param_type|component_value": { + "id": 3, + "output_name": "output" } }, "inputs": [], - "label": "gfastats p1", + "label": "Pretext s2", "name": "Compose text parameter value", "outputs": [ { @@ -2979,14 +2979,21 @@ } ], "position": { - "left": 2616.8792643118272, - "top": 376.4980303583458 + "left": 2137.087731254458, + "top": 1010.3001197648291 }, "post_job_actions": { "HideDatasetActionout1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out1" + }, + "RenameDatasetActionout1": { + "action_arguments": { + "newname": "Pretext s2 path" + }, + "action_type": "RenameDatasetAction", + "output_name": "out1" } }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1", @@ -2996,16 +3003,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"pretext/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "8a853c96-bccc-4ded-9bca-7a66f2b9fb97", + "uuid": "7541a433-1ac8-45eb-953f-0696cce05062", "when": null, "workflow_outputs": [ { - "label": "gfastats p1 path", + "label": "Pretext s2 path", "output_name": "out1", - "uuid": "18c35444-cd38-4b03-9fae-c4c9fff1050c" + "uuid": "18fe7a6c-b603-448f-8448-e5c422aeb6b7" } ] }, @@ -3025,7 +3032,7 @@ } }, "inputs": [], - "label": "Busco p2", + "label": "gfastats s2", "name": "Compose text parameter value", "outputs": [ { @@ -3034,8 +3041,8 @@ } ], "position": { - "left": 2865.9593643001667, - "top": 77.97373176160781 + "left": 2341.810030403245, + "top": 380.6126197648291 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3045,7 +3052,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Busco p2 Path" + "newname": "gfastats s2 path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3058,16 +3065,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "e1fc82f5-5145-4865-882a-f16da5ae03b3", + "uuid": "e8e7721f-48a5-4ce0-8e22-3b674ec3be20", "when": null, "workflow_outputs": [ { - "label": "Busco p2 Path", + "label": "gfastats s2 path", "output_name": "out1", - "uuid": "39e8994e-6ad0-45d1-a130-f2edcc55b213" + "uuid": "a2a42ac1-ecbc-4371-986c-400faa618d46" } ] }, @@ -3087,7 +3094,7 @@ } }, "inputs": [], - "label": "gfastats p2", + "label": "Busco p1", "name": "Compose text parameter value", "outputs": [ { @@ -3096,8 +3103,8 @@ } ], "position": { - "left": 2866.1328134606147, - "top": 391.6195814165314 + "left": 2579.4140634606147, + "top": 70.59525890676582 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3107,7 +3114,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats p2 path" + "newname": "Busco p1 Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3120,16 +3127,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "0bdf6e69-f713-4630-902c-7731475b18d9", + "uuid": "279bcd29-79e1-4078-8b86-34a69399ac7b", "when": null, "workflow_outputs": [ { - "label": "gfastats p2 path", + "label": "Busco p1 Path", "output_name": "out1", - "uuid": "25c99a74-4079-45a5-809b-ad7657afda9b" + "uuid": "941dea07-456e-4f6e-b7ec-5aa1231de628" } ] }, @@ -3144,16 +3151,12 @@ "output_name": "out1" }, "components_2|param_type|component_value": { - "id": 3, - "output_name": "output" - }, - "components_4|param_type|component_value": { "id": 1, "output_name": "output" } }, "inputs": [], - "label": "Busco Purged Hap", + "label": "gfastats p1", "name": "Compose text parameter value", "outputs": [ { @@ -3162,21 +3165,14 @@ } ], "position": { - "left": 3212.92256007387, - "top": 0 + "left": 2616.8792643118272, + "top": 376.49803035834566 }, "post_job_actions": { "HideDatasetActionout1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out1" - }, - "RenameDatasetActionout1": { - "action_arguments": { - "newname": "Busco purged hap Path" - }, - "action_type": "RenameDatasetAction", - "output_name": "out1" } }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1", @@ -3186,16 +3182,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "3ae46b41-80a4-4249-addb-24960c9308ab", + "uuid": "d1bf204f-5263-4058-8888-1c8eb8e077e7", "when": null, "workflow_outputs": [ { - "label": "Busco purged hap Path", + "label": "gfastats p1 path", "output_name": "out1", - "uuid": "836dbc1d-d19d-4c3c-bdac-e4c102061c0c" + "uuid": "18c35444-cd38-4b03-9fae-c4c9fff1050c" } ] }, @@ -3210,16 +3206,12 @@ "output_name": "out1" }, "components_2|param_type|component_value": { - "id": 3, - "output_name": "output" - }, - "components_4|param_type|component_value": { "id": 1, "output_name": "output" } }, "inputs": [], - "label": "gfastats purged hap", + "label": "Busco p2", "name": "Compose text parameter value", "outputs": [ { @@ -3228,8 +3220,8 @@ } ], "position": { - "left": 3239.7645671561722, - "top": 407.9932227245923 + "left": 2865.9593643001667, + "top": 77.97373176160772 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3239,7 +3231,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats purged hap Path" + "newname": "Busco p2 Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3252,16 +3244,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "4b815729-433e-4be0-8bd9-e342dd64be24", + "uuid": "bf91c28e-2393-487c-a2fc-9a5d514d3606", "when": null, "workflow_outputs": [ { - "label": "gfastats purged hap Path", + "label": "Busco p2 Path", "output_name": "out1", - "uuid": "cc25b12e-e9c0-4b81-820f-9ac535819451" + "uuid": "39e8994e-6ad0-45d1-a130-f2edcc55b213" } ] }, @@ -3272,7 +3264,7 @@ "id": 27, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 7, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -3281,7 +3273,7 @@ } }, "inputs": [], - "label": "Bionano", + "label": "gfastats p2", "name": "Compose text parameter value", "outputs": [ { @@ -3290,8 +3282,8 @@ } ], "position": { - "left": 1657.9036346476478, - "top": 1700.6473642552671 + "left": 2866.132813460615, + "top": 391.6195814165312 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3301,7 +3293,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Bionano Path" + "newname": "gfastats p2 path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3314,16 +3306,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"bionano/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "39840a9f-bd21-478d-9ed9-e5dc905e9e0e", + "uuid": "a2ebb29b-cfa1-4388-83a8-3791c874c2ce", "when": null, "workflow_outputs": [ { - "label": "Bionano Path", + "label": "gfastats p2 path", "output_name": "out1", - "uuid": "8f495388-20b4-4017-9e49-e159ca40b6c9" + "uuid": "25c99a74-4079-45a5-809b-ad7657afda9b" } ] }, @@ -3334,16 +3326,20 @@ "id": 28, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 7, "output_name": "out1" }, "components_2|param_type|component_value": { + "id": 3, + "output_name": "output" + }, + "components_4|param_type|component_value": { "id": 1, "output_name": "output" } }, "inputs": [], - "label": "HIfiasm", + "label": "Busco Purged Hap", "name": "Compose text parameter value", "outputs": [ { @@ -3352,8 +3348,8 @@ } ], "position": { - "left": 1675.993908376659, - "top": 1943.9112693392224 + "left": 3212.9225600738696, + "top": 0.0 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3363,7 +3359,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "HIfiasm Path" + "newname": "Busco purged hap Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3376,16 +3372,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"hIfiasm/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "aa52fcc6-fe52-41fc-9e38-525b0c564989", + "uuid": "14282624-2dfc-472a-a95b-57abbb4eece6", "when": null, "workflow_outputs": [ { - "label": "HIfiasm Path", + "label": "Busco purged hap Path", "output_name": "out1", - "uuid": "ab6b40b7-c5e9-401d-b691-d12d86692ea4" + "uuid": "836dbc1d-d19d-4c3c-bdac-e4c102061c0c" } ] }, @@ -3396,16 +3392,20 @@ "id": 29, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 7, "output_name": "out1" }, "components_2|param_type|component_value": { + "id": 3, + "output_name": "output" + }, + "components_4|param_type|component_value": { "id": 1, "output_name": "output" } }, "inputs": [], - "label": "purge_dups p1", + "label": "gfastats purged hap", "name": "Compose text parameter value", "outputs": [ { @@ -3414,8 +3414,8 @@ } ], "position": { - "left": 1682.0696884174565, - "top": 2221.28145457317 + "left": 3239.7645671561727, + "top": 407.9932227245922 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3425,7 +3425,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "purge_dups Path p1" + "newname": "gfastats purged hap Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3438,16 +3438,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/p1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "d7d9344e-f9b6-4337-a47b-c1ad5cac58bf", + "uuid": "88227bf8-5c69-493e-95bd-86366940ad72", "when": null, "workflow_outputs": [ { - "label": "purge_dups Path p1", + "label": "gfastats purged hap Path", "output_name": "out1", - "uuid": "ee7b6407-c087-4eed-a0d8-6019240ffcf2" + "uuid": "cc25b12e-e9c0-4b81-820f-9ac535819451" } ] }, @@ -3458,7 +3458,7 @@ "id": 30, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 13, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -3467,7 +3467,7 @@ } }, "inputs": [], - "label": "Salsa", + "label": "Bionano", "name": "Compose text parameter value", "outputs": [ { @@ -3476,8 +3476,8 @@ } ], "position": { - "left": 1685.5948295520323, - "top": 2496.56766509482 + "left": 1689.3858121269682, + "top": 1654.5706887786596 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3487,7 +3487,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Salsa Path" + "newname": "Bionano Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3500,16 +3500,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"salsa/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"bionano/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "eab68aa2-01eb-45bc-87a4-9c7e8e7e6577", + "uuid": "35693170-22e5-4b24-8d87-df92b70330a4", "when": null, "workflow_outputs": [ { - "label": "Salsa Path", + "label": "Bionano Path", "output_name": "out1", - "uuid": "11deb798-17f2-4dce-a4d8-cd878961debf" + "uuid": "8f495388-20b4-4017-9e49-e159ca40b6c9" } ] }, @@ -3520,7 +3520,7 @@ "id": 31, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 13, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -3529,7 +3529,7 @@ } }, "inputs": [], - "label": "purge_dups p2", + "label": "Yahs", "name": "Compose text parameter value", "outputs": [ { @@ -3538,8 +3538,8 @@ } ], "position": { - "left": 2035.5249226421374, - "top": 2240.998127990509 + "left": 1685.5948295520325, + "top": 2496.5676650948203 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3549,7 +3549,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "purge_dups Path p2" + "newname": "Yahs Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3562,16 +3562,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/p2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"yahs/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "2bca5b05-21ad-4335-9fd8-b8f4162685e0", + "uuid": "77182ba4-2056-4683-ba58-b427264d5127", "when": null, "workflow_outputs": [ { - "label": "purge_dups Path p2", + "label": "Yahs Path", "output_name": "out1", - "uuid": "c2f04aec-0bd9-4413-8a0e-5a92ac84a9bc" + "uuid": "15fc237e-52e2-4b5e-ab70-c78dc796323e" } ] }, @@ -3582,7 +3582,7 @@ "id": 32, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 13, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -3604,8 +3604,8 @@ } ], "position": { - "left": 2032.121191451342, - "top": 2552.5327778776164 + "left": 1985.6110781180814, + "top": 2505.111484268236 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3631,7 +3631,7 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "6e87aae8-216f-424f-a2b1-9897b7162899", + "uuid": "4ba3c1ee-3236-4d7e-beea-2a29696b75bd", "when": null, "workflow_outputs": [ { @@ -3643,7 +3643,7 @@ } }, "tags": "", - "uuid": "5be181ed-8459-445e-897a-45decc054893" + "uuid": "83583364-a368-4fc0-ac9a-fbafb34f086f" }, "tool_id": null, "type": "subworkflow", @@ -5027,6 +5027,6 @@ } }, "tags": [], - "uuid": "a502deb4-a66c-450b-a235-5b4125126b38", - "version": 6 + "uuid": "adc4876f-b754-4c02-8566-1e65eed32df7", + "version": 4 } \ No newline at end of file diff --git a/workflows/VGP-assembly-v2/Export-WF1-4/Galaxy-Workflow-Export_WF1-4_Assembly_HiC.ga b/workflows/VGP-assembly-v2/Export-WF1-4/Galaxy-Workflow-Export_WF1-4_Assembly_HiC.ga index ccbb4af52..f0c1e3106 100644 --- a/workflows/VGP-assembly-v2/Export-WF1-4/Galaxy-Workflow-Export_WF1-4_Assembly_HiC.ga +++ b/workflows/VGP-assembly-v2/Export-WF1-4/Galaxy-Workflow-Export_WF1-4_Assembly_HiC.ga @@ -2047,8 +2047,8 @@ } ], "position": { - "left": 888.8403252145398, - "top": 1244.1872541863545 + "left": 901.6183860897531, + "top": 1245.8135776000238 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2160,8 +2160,8 @@ } ], "position": { - "left": 1271.5669465063231, - "top": 1060.7515977265828 + "left": 1263.6733559531035, + "top": 1049.7775118609336 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2203,14 +2203,10 @@ "components_2|param_type|component_value": { "id": 1, "output_name": "output" - }, - "components_4|param_type|component_value": { - "id": 3, - "output_name": "output" } }, "inputs": [], - "label": "Genomescope", + "label": "Busco c", "name": "Compose text parameter value", "outputs": [ { @@ -2219,21 +2215,14 @@ } ], "position": { - "left": 2071.028743964346, - "top": 1316.584827816368 + "left": 1825.5251219377596, + "top": 59.95290260356503 }, "post_job_actions": { "HideDatasetActionout1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out1" - }, - "RenameDatasetActionout1": { - "action_arguments": { - "newname": "Genomescope path" - }, - "action_type": "RenameDatasetAction", - "output_name": "out1" } }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1", @@ -2243,16 +2232,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"genomescope/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_genomescope_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/c/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "f0974de0-9a40-4e2a-afc8-268bb3a21dd1", + "uuid": "ee07c83e-5711-4f4f-81ec-9e0c2105d6f7", "when": null, "workflow_outputs": [ { - "label": "Genomescope path", + "label": "Busco c path", "output_name": "out1", - "uuid": "ea782ff8-9dcf-428c-8661-0f0f00f3231f" + "uuid": "ecf1ee1e-5613-44b4-992f-ed37ecf48548" } ] }, @@ -2267,12 +2256,12 @@ "output_name": "out1" }, "components_2|param_type|component_value": { - "id": 2, + "id": 1, "output_name": "output" } }, "inputs": [], - "label": "Merqury", + "label": "gfastats c ", "name": "Compose text parameter value", "outputs": [ { @@ -2281,8 +2270,8 @@ } ], "position": { - "left": 2408.667576170503, - "top": 1325.4738239975713 + "left": 1828.2518626642657, + "top": 392.1025591031773 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2292,7 +2281,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Merqury c path" + "newname": "gfastats c path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2305,16 +2294,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"merqury/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/c/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "8541357f-1955-4078-b4a6-caf441401b66", + "uuid": "7ff27452-4035-4210-848c-12a861351e01", "when": null, "workflow_outputs": [ { - "label": "Merqury c path", + "label": "gfastats c path", "output_name": "out1", - "uuid": "080250d0-9459-42f6-bc7b-c7e4534cfdbc" + "uuid": "ff081fcb-2fe0-43d7-87d3-15ae5360cd45" } ] }, @@ -2331,10 +2320,14 @@ "components_2|param_type|component_value": { "id": 1, "output_name": "output" + }, + "components_4|param_type|component_value": { + "id": 3, + "output_name": "output" } }, "inputs": [], - "label": null, + "label": "Genomescope", "name": "Compose text parameter value", "outputs": [ { @@ -2343,8 +2336,8 @@ } ], "position": { - "left": 2676.2542643118272, - "top": 1327.8001744231776 + "left": 2009.9695164575116, + "top": 1334.8267703356214 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2354,7 +2347,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Merqury p path" + "newname": "Genomescope path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2367,16 +2360,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"merqury/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"genomescope/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_genomescope_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "1b2abf5e-d56e-499a-83da-d503a34f981c", + "uuid": "f0974de0-9a40-4e2a-afc8-268bb3a21dd1", "when": null, "workflow_outputs": [ { - "label": "Merqury p path", + "label": "Genomescope path", "output_name": "out1", - "uuid": "2de757c6-b4ee-44a5-ae36-46b97d7713d8" + "uuid": "ea782ff8-9dcf-428c-8661-0f0f00f3231f" } ] }, @@ -2387,16 +2380,16 @@ "id": 11, "input_connections": { "components_0|param_type|component_value": { - "id": 6, + "id": 5, "output_name": "out1" }, - "components_1|param_type|component_value": { - "id": 3, + "components_2|param_type|component_value": { + "id": 2, "output_name": "output" } }, "inputs": [], - "label": "Intermediate haplotype", + "label": "Merqury", "name": "Compose text parameter value", "outputs": [ { @@ -2405,8 +2398,8 @@ } ], "position": { - "left": 1244.8133244797375, - "top": 1748.2516888238306 + "left": 2305.0307369613033, + "top": 1371.303115252299 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2416,7 +2409,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Intermediate haplotype path" + "newname": "Merqury c path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2429,16 +2422,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"merqury/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "d96ad636-0a3d-4151-8b35-bfeea8272ecc", + "uuid": "8541357f-1955-4078-b4a6-caf441401b66", "when": null, "workflow_outputs": [ { - "label": "Intermediate haplotype path", + "label": "Merqury c path", "output_name": "out1", - "uuid": "863497a1-3a47-4549-bb55-bffad3883a39" + "uuid": "080250d0-9459-42f6-bc7b-c7e4534cfdbc" } ] }, @@ -2449,7 +2442,7 @@ "id": 12, "input_connections": { "components_0|param_type|component_value": { - "id": 6, + "id": 5, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -2458,7 +2451,7 @@ } }, "inputs": [], - "label": "Meryl", + "label": null, "name": "Compose text parameter value", "outputs": [ { @@ -2467,8 +2460,8 @@ } ], "position": { - "left": 1682.7821109186366, - "top": 2734.84891509482 + "left": 2540.3688447995355, + "top": 1498.359788467742 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2478,7 +2471,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Meryl Path" + "newname": "Merqury p path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2491,16 +2484,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"meryl/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"merqury/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "998fae4c-35aa-4369-8c1b-960614467da3", + "uuid": "1b2abf5e-d56e-499a-83da-d503a34f981c", "when": null, "workflow_outputs": [ { - "label": "Meryl Path", + "label": "Merqury p path", "output_name": "out1", - "uuid": "272b4efc-7a5c-480c-9ec6-660d9a8b89f2" + "uuid": "2de757c6-b4ee-44a5-ae36-46b97d7713d8" } ] }, @@ -2511,16 +2504,16 @@ "id": 13, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, - "components_2|param_type|component_value": { - "id": 1, + "components_1|param_type|component_value": { + "id": 3, "output_name": "output" } }, "inputs": [], - "label": "Busco c", + "label": "Intermediate haplotype", "name": "Compose text parameter value", "outputs": [ { @@ -2529,14 +2522,21 @@ } ], "position": { - "left": 1825.5251219377596, - "top": 59.95290260356503 + "left": 1244.8133244797375, + "top": 1748.2516888238306 }, "post_job_actions": { "HideDatasetActionout1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out1" + }, + "RenameDatasetActionout1": { + "action_arguments": { + "newname": "Intermediate haplotype path" + }, + "action_type": "RenameDatasetAction", + "output_name": "out1" } }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1", @@ -2546,16 +2546,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/c/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "ee07c83e-5711-4f4f-81ec-9e0c2105d6f7", + "uuid": "d96ad636-0a3d-4151-8b35-bfeea8272ecc", "when": null, "workflow_outputs": [ { - "label": "Busco c path", + "label": "Intermediate haplotype path", "output_name": "out1", - "uuid": "ecf1ee1e-5613-44b4-992f-ed37ecf48548" + "uuid": "863497a1-3a47-4549-bb55-bffad3883a39" } ] }, @@ -2566,7 +2566,7 @@ "id": 14, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -2575,7 +2575,7 @@ } }, "inputs": [], - "label": "gfastats c ", + "label": "HIfiasm", "name": "Compose text parameter value", "outputs": [ { @@ -2584,8 +2584,8 @@ } ], "position": { - "left": 1847.105149048301, - "top": 376.5848460358178 + "left": 1670.4414723317645, + "top": 1968.0696604856596 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2595,7 +2595,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats c path" + "newname": "HIfiasm Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2608,16 +2608,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/c/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"hifiasm/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "7ff27452-4035-4210-848c-12a861351e01", + "uuid": "aa52fcc6-fe52-41fc-9e38-525b0c564989", "when": null, "workflow_outputs": [ { - "label": "gfastats c path", + "label": "HIfiasm Path", "output_name": "out1", - "uuid": "ff081fcb-2fe0-43d7-87d3-15ae5360cd45" + "uuid": "ab6b40b7-c5e9-401d-b691-d12d86692ea4" } ] }, @@ -2628,7 +2628,7 @@ "id": 15, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -2637,7 +2637,7 @@ } }, "inputs": [], - "label": "Busco s2", + "label": "purge_dups p1", "name": "Compose text parameter value", "outputs": [ { @@ -2646,8 +2646,8 @@ } ], "position": { - "left": 2053.2855507507265, - "top": 77.99109148095542 + "left": 1686.4395901180558, + "top": 2214.7096632841826 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2657,7 +2657,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Busco s2 Path" + "newname": "purge_dups Path p1" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2670,16 +2670,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/p1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "b717aa49-1586-47a7-bae4-1acafdd708d9", + "uuid": "d7d9344e-f9b6-4337-a47b-c1ad5cac58bf", "when": null, "workflow_outputs": [ { - "label": "Busco s2 Path", + "label": "purge_dups Path p1", "output_name": "out1", - "uuid": "2545849e-3a9f-4b93-acfd-9bbda9b11002" + "uuid": "ee7b6407-c087-4eed-a0d8-6019240ffcf2" } ] }, @@ -2690,7 +2690,7 @@ "id": 16, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -2699,7 +2699,7 @@ } }, "inputs": [], - "label": "gfastats s1", + "label": "purge_dups p2", "name": "Compose text parameter value", "outputs": [ { @@ -2708,8 +2708,8 @@ } ], "position": { - "left": 2092.0703863384133, - "top": 378.8244263325762 + "left": 1991.8492322053905, + "top": 2212.3456427728447 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2719,7 +2719,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats s1 path" + "newname": "purge_dups Path p2" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2732,16 +2732,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/p2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "d8714313-14f5-4bfa-9916-13ba9f6cc153", + "uuid": "2bca5b05-21ad-4335-9fd8-b8f4162685e0", "when": null, "workflow_outputs": [ { - "label": "gfastats s1 path", + "label": "purge_dups Path p2", "output_name": "out1", - "uuid": "3f789e73-69d4-4d1b-9f8b-986057199d0f" + "uuid": "c2f04aec-0bd9-4413-8a0e-5a92ac84a9bc" } ] }, @@ -2752,20 +2752,16 @@ "id": 17, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, "components_2|param_type|component_value": { "id": 1, "output_name": "output" - }, - "components_4|param_type|component_value": { - "id": 3, - "output_name": "output" } }, "inputs": [], - "label": "Pretext s1", + "label": "Meryl", "name": "Compose text parameter value", "outputs": [ { @@ -2774,8 +2770,8 @@ } ], "position": { - "left": 1893.8411346476478, - "top": 1007.2273184880099 + "left": 1682.7821109186366, + "top": 2734.84891509482 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2785,7 +2781,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Pretext s1 path" + "newname": "Meryl Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2798,16 +2794,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"pretext/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"meryl/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "9b865ce1-fc13-4fc0-a7ca-c34b32f5268e", + "uuid": "998fae4c-35aa-4369-8c1b-960614467da3", "when": null, "workflow_outputs": [ { - "label": "Pretext s1 path", + "label": "Meryl Path", "output_name": "out1", - "uuid": "36a3f1e9-402e-48cd-b70f-80901b5f3ff0" + "uuid": "272b4efc-7a5c-480c-9ec6-660d9a8b89f2" } ] }, @@ -2827,7 +2823,7 @@ } }, "inputs": [], - "label": "Busco s1", + "label": "Busco s2", "name": "Compose text parameter value", "outputs": [ { @@ -2836,8 +2832,8 @@ } ], "position": { - "left": 2304.3967549834692, - "top": 66.89734261967101 + "left": 2053.2855507507265, + "top": 77.99109148095542 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2847,7 +2843,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Busco s1 Path" + "newname": "Busco s2 Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2863,13 +2859,13 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "63b266bd-78b7-4154-9e3d-94423dc670b2", + "uuid": "b717aa49-1586-47a7-bae4-1acafdd708d9", "when": null, "workflow_outputs": [ { - "label": "Busco s1 Path", + "label": "Busco s2 Path", "output_name": "out1", - "uuid": "edd1d288-7361-4f2e-9702-b4a548d7c4b1" + "uuid": "2545849e-3a9f-4b93-acfd-9bbda9b11002" } ] }, @@ -2893,7 +2889,7 @@ } }, "inputs": [], - "label": "Pretext s2", + "label": "Pretext s1", "name": "Compose text parameter value", "outputs": [ { @@ -2902,8 +2898,8 @@ } ], "position": { - "left": 2137.087731254458, - "top": 1010.300119764829 + "left": 1913.905733095926, + "top": 901.6138446229585 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2913,7 +2909,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Pretext s2 path" + "newname": "Pretext s1 path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2929,13 +2925,13 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"pretext/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "960f659c-abbf-4310-af81-316ebf3d72a2", + "uuid": "9b865ce1-fc13-4fc0-a7ca-c34b32f5268e", "when": null, "workflow_outputs": [ { - "label": "Pretext s2 path", + "label": "Pretext s1 path", "output_name": "out1", - "uuid": "18fe7a6c-b603-448f-8448-e5c422aeb6b7" + "uuid": "36a3f1e9-402e-48cd-b70f-80901b5f3ff0" } ] }, @@ -2955,7 +2951,7 @@ } }, "inputs": [], - "label": "gfastats s2", + "label": "gfastats s1", "name": "Compose text parameter value", "outputs": [ { @@ -2964,8 +2960,8 @@ } ], "position": { - "left": 2341.810030403245, - "top": 380.612619764829 + "left": 2092.0703863384133, + "top": 378.8244263325762 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2975,7 +2971,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats s2 path" + "newname": "gfastats s1 path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2988,16 +2984,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "a33409a7-f413-4804-a365-bae779c7ef0f", + "uuid": "d8714313-14f5-4bfa-9916-13ba9f6cc153", "when": null, "workflow_outputs": [ { - "label": "gfastats s2 path", + "label": "gfastats s1 path", "output_name": "out1", - "uuid": "a2a42ac1-ecbc-4371-986c-400faa618d46" + "uuid": "3f789e73-69d4-4d1b-9f8b-986057199d0f" } ] }, @@ -3017,7 +3013,7 @@ } }, "inputs": [], - "label": "Busco p1", + "label": "Busco s1", "name": "Compose text parameter value", "outputs": [ { @@ -3026,8 +3022,8 @@ } ], "position": { - "left": 2579.4140634606147, - "top": 70.59525890676582 + "left": 2304.3967549834692, + "top": 66.89734261967101 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3037,7 +3033,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Busco p1 Path" + "newname": "Busco s1 Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3053,13 +3049,13 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "2c5eef41-840a-4c44-8d26-b9f31eac6dfa", + "uuid": "63b266bd-78b7-4154-9e3d-94423dc670b2", "when": null, "workflow_outputs": [ { - "label": "Busco p1 Path", + "label": "Busco s1 Path", "output_name": "out1", - "uuid": "941dea07-456e-4f6e-b7ec-5aa1231de628" + "uuid": "edd1d288-7361-4f2e-9702-b4a548d7c4b1" } ] }, @@ -3076,10 +3072,14 @@ "components_2|param_type|component_value": { "id": 1, "output_name": "output" + }, + "components_4|param_type|component_value": { + "id": 3, + "output_name": "output" } }, "inputs": [], - "label": "gfastats p1", + "label": "Pretext s2", "name": "Compose text parameter value", "outputs": [ { @@ -3088,14 +3088,21 @@ } ], "position": { - "left": 2616.8792643118272, - "top": 376.4980303583458 + "left": 2137.087731254458, + "top": 1010.300119764829 }, "post_job_actions": { "HideDatasetActionout1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out1" + }, + "RenameDatasetActionout1": { + "action_arguments": { + "newname": "Pretext s2 path" + }, + "action_type": "RenameDatasetAction", + "output_name": "out1" } }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1", @@ -3105,16 +3112,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"pretext/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "8a853c96-bccc-4ded-9bca-7a66f2b9fb97", + "uuid": "960f659c-abbf-4310-af81-316ebf3d72a2", "when": null, "workflow_outputs": [ { - "label": "gfastats p1 path", + "label": "Pretext s2 path", "output_name": "out1", - "uuid": "18c35444-cd38-4b03-9fae-c4c9fff1050c" + "uuid": "18fe7a6c-b603-448f-8448-e5c422aeb6b7" } ] }, @@ -3134,7 +3141,7 @@ } }, "inputs": [], - "label": "Busco p2", + "label": "gfastats s2", "name": "Compose text parameter value", "outputs": [ { @@ -3143,8 +3150,8 @@ } ], "position": { - "left": 2865.9593643001667, - "top": 77.97373176160781 + "left": 2341.810030403245, + "top": 380.612619764829 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3154,7 +3161,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Busco p2 Path" + "newname": "gfastats s2 path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3167,16 +3174,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "e1fc82f5-5145-4865-882a-f16da5ae03b3", + "uuid": "a33409a7-f413-4804-a365-bae779c7ef0f", "when": null, "workflow_outputs": [ { - "label": "Busco p2 Path", + "label": "gfastats s2 path", "output_name": "out1", - "uuid": "39e8994e-6ad0-45d1-a130-f2edcc55b213" + "uuid": "a2a42ac1-ecbc-4371-986c-400faa618d46" } ] }, @@ -3196,7 +3203,7 @@ } }, "inputs": [], - "label": "gfastats p2", + "label": "Busco p1", "name": "Compose text parameter value", "outputs": [ { @@ -3205,8 +3212,8 @@ } ], "position": { - "left": 2866.1328134606147, - "top": 391.6195814165314 + "left": 2579.4140634606147, + "top": 70.59525890676582 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3216,7 +3223,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats p2 path" + "newname": "Busco p1 Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3229,16 +3236,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "0bdf6e69-f713-4630-902c-7731475b18d9", + "uuid": "2c5eef41-840a-4c44-8d26-b9f31eac6dfa", "when": null, "workflow_outputs": [ { - "label": "gfastats p2 path", + "label": "Busco p1 Path", "output_name": "out1", - "uuid": "25c99a74-4079-45a5-809b-ad7657afda9b" + "uuid": "941dea07-456e-4f6e-b7ec-5aa1231de628" } ] }, @@ -3253,16 +3260,12 @@ "output_name": "out1" }, "components_2|param_type|component_value": { - "id": 3, - "output_name": "output" - }, - "components_4|param_type|component_value": { "id": 1, "output_name": "output" } }, "inputs": [], - "label": "Busco Purged Hap", + "label": "gfastats p1", "name": "Compose text parameter value", "outputs": [ { @@ -3271,21 +3274,14 @@ } ], "position": { - "left": 3212.92256007387, - "top": 0 + "left": 2616.8792643118272, + "top": 376.4980303583458 }, "post_job_actions": { "HideDatasetActionout1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out1" - }, - "RenameDatasetActionout1": { - "action_arguments": { - "newname": "Busco purged hap Path" - }, - "action_type": "RenameDatasetAction", - "output_name": "out1" } }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1", @@ -3295,16 +3291,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "3ae46b41-80a4-4249-addb-24960c9308ab", + "uuid": "8a853c96-bccc-4ded-9bca-7a66f2b9fb97", "when": null, "workflow_outputs": [ { - "label": "Busco purged hap Path", + "label": "gfastats p1 path", "output_name": "out1", - "uuid": "836dbc1d-d19d-4c3c-bdac-e4c102061c0c" + "uuid": "18c35444-cd38-4b03-9fae-c4c9fff1050c" } ] }, @@ -3319,16 +3315,12 @@ "output_name": "out1" }, "components_2|param_type|component_value": { - "id": 3, - "output_name": "output" - }, - "components_4|param_type|component_value": { "id": 1, "output_name": "output" } }, "inputs": [], - "label": "gfastats purged hap", + "label": "Busco p2", "name": "Compose text parameter value", "outputs": [ { @@ -3337,8 +3329,8 @@ } ], "position": { - "left": 3239.7645671561722, - "top": 407.9932227245923 + "left": 2865.9593643001667, + "top": 77.97373176160781 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3348,7 +3340,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats purged hap Path" + "newname": "Busco p2 Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3361,16 +3353,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "4b815729-433e-4be0-8bd9-e342dd64be24", + "uuid": "e1fc82f5-5145-4865-882a-f16da5ae03b3", "when": null, "workflow_outputs": [ { - "label": "gfastats purged hap Path", + "label": "Busco p2 Path", "output_name": "out1", - "uuid": "cc25b12e-e9c0-4b81-820f-9ac535819451" + "uuid": "39e8994e-6ad0-45d1-a130-f2edcc55b213" } ] }, @@ -3381,7 +3373,7 @@ "id": 27, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 7, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -3390,7 +3382,7 @@ } }, "inputs": [], - "label": "Bionano", + "label": "gfastats p2", "name": "Compose text parameter value", "outputs": [ { @@ -3399,8 +3391,8 @@ } ], "position": { - "left": 1657.9036346476478, - "top": 1700.6473642552671 + "left": 2866.1328134606147, + "top": 391.6195814165314 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3410,7 +3402,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Bionano Path" + "newname": "gfastats p2 path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3423,16 +3415,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"bionano/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "39840a9f-bd21-478d-9ed9-e5dc905e9e0e", + "uuid": "0bdf6e69-f713-4630-902c-7731475b18d9", "when": null, "workflow_outputs": [ { - "label": "Bionano Path", + "label": "gfastats p2 path", "output_name": "out1", - "uuid": "8f495388-20b4-4017-9e49-e159ca40b6c9" + "uuid": "25c99a74-4079-45a5-809b-ad7657afda9b" } ] }, @@ -3443,16 +3435,20 @@ "id": 28, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 7, "output_name": "out1" }, "components_2|param_type|component_value": { + "id": 3, + "output_name": "output" + }, + "components_4|param_type|component_value": { "id": 1, "output_name": "output" } }, "inputs": [], - "label": "HIfiasm", + "label": "Busco Purged Hap", "name": "Compose text parameter value", "outputs": [ { @@ -3461,8 +3457,8 @@ } ], "position": { - "left": 1675.993908376659, - "top": 1943.9112693392224 + "left": 3212.92256007387, + "top": 0 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3472,7 +3468,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "HIfiasm Path" + "newname": "Busco purged hap Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3485,16 +3481,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"hIfiasm/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "aa52fcc6-fe52-41fc-9e38-525b0c564989", + "uuid": "3ae46b41-80a4-4249-addb-24960c9308ab", "when": null, "workflow_outputs": [ { - "label": "HIfiasm Path", + "label": "Busco purged hap Path", "output_name": "out1", - "uuid": "ab6b40b7-c5e9-401d-b691-d12d86692ea4" + "uuid": "836dbc1d-d19d-4c3c-bdac-e4c102061c0c" } ] }, @@ -3505,16 +3501,20 @@ "id": 29, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 7, "output_name": "out1" }, "components_2|param_type|component_value": { + "id": 3, + "output_name": "output" + }, + "components_4|param_type|component_value": { "id": 1, "output_name": "output" } }, "inputs": [], - "label": "purge_dups p1", + "label": "gfastats purged hap", "name": "Compose text parameter value", "outputs": [ { @@ -3523,8 +3523,8 @@ } ], "position": { - "left": 1682.0696884174565, - "top": 2221.28145457317 + "left": 3239.7645671561722, + "top": 407.9932227245923 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3534,7 +3534,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "purge_dups Path p1" + "newname": "gfastats purged hap Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3547,16 +3547,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/p1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "d7d9344e-f9b6-4337-a47b-c1ad5cac58bf", + "uuid": "4b815729-433e-4be0-8bd9-e342dd64be24", "when": null, "workflow_outputs": [ { - "label": "purge_dups Path p1", + "label": "gfastats purged hap Path", "output_name": "out1", - "uuid": "ee7b6407-c087-4eed-a0d8-6019240ffcf2" + "uuid": "cc25b12e-e9c0-4b81-820f-9ac535819451" } ] }, @@ -3567,7 +3567,7 @@ "id": 30, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 13, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -3576,7 +3576,7 @@ } }, "inputs": [], - "label": "Salsa", + "label": "Bionano", "name": "Compose text parameter value", "outputs": [ { @@ -3585,8 +3585,8 @@ } ], "position": { - "left": 1685.5948295520323, - "top": 2496.56766509482 + "left": 1689.3858121269682, + "top": 1654.5706887786594 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3596,7 +3596,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Salsa Path" + "newname": "Bionano Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3609,16 +3609,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"salsa/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"bionano/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "eab68aa2-01eb-45bc-87a4-9c7e8e7e6577", + "uuid": "39840a9f-bd21-478d-9ed9-e5dc905e9e0e", "when": null, "workflow_outputs": [ { - "label": "Salsa Path", + "label": "Bionano Path", "output_name": "out1", - "uuid": "11deb798-17f2-4dce-a4d8-cd878961debf" + "uuid": "8f495388-20b4-4017-9e49-e159ca40b6c9" } ] }, @@ -3629,7 +3629,7 @@ "id": 31, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 13, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -3638,7 +3638,7 @@ } }, "inputs": [], - "label": "purge_dups p2", + "label": "Yahs", "name": "Compose text parameter value", "outputs": [ { @@ -3647,8 +3647,8 @@ } ], "position": { - "left": 2035.5249226421374, - "top": 2240.998127990509 + "left": 1685.5948295520323, + "top": 2496.56766509482 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3658,7 +3658,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "purge_dups Path p2" + "newname": "Yahs Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3671,16 +3671,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/p2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"yahs/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "2bca5b05-21ad-4335-9fd8-b8f4162685e0", + "uuid": "eab68aa2-01eb-45bc-87a4-9c7e8e7e6577", "when": null, "workflow_outputs": [ { - "label": "purge_dups Path p2", + "label": "Yahs Path", "output_name": "out1", - "uuid": "c2f04aec-0bd9-4413-8a0e-5a92ac84a9bc" + "uuid": "48062ca2-2542-46a0-a9a6-c6a809ac3684" } ] }, @@ -3691,7 +3691,7 @@ "id": 32, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 13, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -3713,8 +3713,8 @@ } ], "position": { - "left": 2032.121191451342, - "top": 2552.5327778776164 + "left": 1985.6110781180814, + "top": 2505.1114842682364 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3752,7 +3752,7 @@ } }, "tags": "", - "uuid": "e8ffe3b6-26b6-46e9-ae58-c5e7fde7bc29" + "uuid": "23e8bcd0-13f9-45a0-b847-c66c92aba24c" }, "tool_id": null, "type": "subworkflow", @@ -5393,6 +5393,6 @@ } }, "tags": [], - "uuid": "cc8ebedd-cc3c-4087-84a1-a4ae29e84202", - "version": 6 + "uuid": "01156e70-4663-403c-8c3b-ffb16bb9a51a", + "version": 7 } \ No newline at end of file diff --git a/workflows/VGP-assembly-v2/Export-WF2-5/Galaxy-Workflow-Export_WF2-5_Assembly_Trio.ga b/workflows/VGP-assembly-v2/Export-WF2-5/Galaxy-Workflow-Export_WF2-5_Assembly_Trio.ga index 17fbe3197..1606b4653 100644 --- a/workflows/VGP-assembly-v2/Export-WF2-5/Galaxy-Workflow-Export_WF2-5_Assembly_Trio.ga +++ b/workflows/VGP-assembly-v2/Export-WF2-5/Galaxy-Workflow-Export_WF2-5_Assembly_Trio.ga @@ -1979,14 +1979,14 @@ "name": "Input parameter", "outputs": [], "position": { - "left": 0, + "left": 0.0, "top": 1412.1079716128102 }, "tool_id": null, "tool_state": "{\"parameter_type\": \"text\", \"optional\": false}", "tool_version": null, "type": "parameter_input", - "uuid": "c38f6049-408f-40e3-9737-7a8c873d7da1", + "uuid": "c9495efd-aaf7-44f0-b98d-7f99a283201e", "when": null, "workflow_outputs": [] }, @@ -2006,14 +2006,14 @@ "name": "Input parameter", "outputs": [], "position": { - "left": 3.0251037183103424, + "left": 3.025103718310447, "top": 1524.9876379842785 }, "tool_id": null, "tool_state": "{\"parameter_type\": \"text\", \"optional\": false}", "tool_version": null, "type": "parameter_input", - "uuid": "df2514d2-74f2-4579-a18d-64de22d480ba", + "uuid": "b3816f4a-e0b0-44e2-9953-4e834bbc1424", "when": null, "workflow_outputs": [] }, @@ -2033,14 +2033,14 @@ "name": "Input parameter", "outputs": [], "position": { - "left": 5.5771931247935616, - "top": 1605.2654481521888 + "left": 5.577193124793666, + "top": 1605.2654481521886 }, "tool_id": null, "tool_state": "{\"parameter_type\": \"text\", \"optional\": false}", "tool_version": null, "type": "parameter_input", - "uuid": "7679e681-5422-4cad-a0e0-3554db0551b4", + "uuid": "913130c4-2955-49ee-861b-52c9ba625571", "when": null, "workflow_outputs": [] }, @@ -2060,14 +2060,14 @@ "name": "Input parameter", "outputs": [], "position": { - "left": 3.910500647239937, + "left": 3.910500647240042, "top": 1708.7029117132897 }, "tool_id": null, "tool_state": "{\"parameter_type\": \"text\", \"optional\": false}", "tool_version": null, "type": "parameter_input", - "uuid": "04c39f38-970e-451b-a650-3bb630d8d4f8", + "uuid": "57143386-44a4-4ccf-b8c9-c99b7e293894", "when": null, "workflow_outputs": [] }, @@ -2100,8 +2100,8 @@ } ], "position": { - "left": 517.0355871896256, - "top": 1166.2550557781217 + "left": 517.0355871896259, + "top": 1166.2550557781215 }, "post_job_actions": { "RenameDatasetActionout1": { @@ -2122,7 +2122,7 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"species/\"}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/assembly_vgp_\"}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 6, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_2.0/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "b86485d7-063e-4c28-ba5d-cfd34922cf28", + "uuid": "3a576e3d-6221-47fb-a7ef-a0d7aee72bf2", "when": null, "workflow_outputs": [ { @@ -2153,8 +2153,8 @@ } ], "position": { - "left": 888.8403252145398, - "top": 1244.1872541863545 + "left": 901.6183860897531, + "top": 1245.8135776000236 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2173,7 +2173,7 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"evaluation/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "6582a456-fdb0-4e1d-a717-858d0ff20d27", + "uuid": "4dc496dd-db31-49e8-bfd8-5b6d34687bb5", "when": null, "workflow_outputs": [ { @@ -2204,7 +2204,7 @@ } ], "position": { - "left": 890.2647477831423, + "left": 890.2647477831424, "top": 1548.1994901006497 }, "post_job_actions": { @@ -2231,7 +2231,7 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"intermediates/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "d7ab3988-5f01-499d-8290-274fef8c5dec", + "uuid": "1ee8f424-566d-4a99-8635-4e43aeaef3b4", "when": null, "workflow_outputs": [ { @@ -2266,8 +2266,8 @@ } ], "position": { - "left": 1271.5669465063231, - "top": 1060.7515977265828 + "left": 1263.6733559531035, + "top": 1049.7775118609334 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2286,7 +2286,7 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "57658471-57f2-4eae-8f84-c9f1f4357560", + "uuid": "de12fd12-e231-47b3-a5c4-54836b603e57", "when": null, "workflow_outputs": [ { @@ -2309,14 +2309,10 @@ "components_2|param_type|component_value": { "id": 1, "output_name": "output" - }, - "components_4|param_type|component_value": { - "id": 3, - "output_name": "output" } }, "inputs": [], - "label": "Genomescope", + "label": "Busco c", "name": "Compose text parameter value", "outputs": [ { @@ -2325,21 +2321,14 @@ } ], "position": { - "left": 2071.028743964346, - "top": 1316.584827816368 + "left": 1825.5251219377596, + "top": 59.95290260356501 }, "post_job_actions": { "HideDatasetActionout1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out1" - }, - "RenameDatasetActionout1": { - "action_arguments": { - "newname": "Genomescope path" - }, - "action_type": "RenameDatasetAction", - "output_name": "out1" } }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1", @@ -2349,16 +2338,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"genomescope/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_genomescope_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/c/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "f0974de0-9a40-4e2a-afc8-268bb3a21dd1", + "uuid": "fdc0d1b7-eec9-4268-a0e9-7855c540221e", "when": null, "workflow_outputs": [ { - "label": "Genomescope path", + "label": "Busco c path", "output_name": "out1", - "uuid": "ea782ff8-9dcf-428c-8661-0f0f00f3231f" + "uuid": "ecf1ee1e-5613-44b4-992f-ed37ecf48548" } ] }, @@ -2373,12 +2362,12 @@ "output_name": "out1" }, "components_2|param_type|component_value": { - "id": 2, + "id": 1, "output_name": "output" } }, "inputs": [], - "label": "Merqury", + "label": "gfastats c ", "name": "Compose text parameter value", "outputs": [ { @@ -2387,8 +2376,8 @@ } ], "position": { - "left": 2408.667576170503, - "top": 1325.4738239975713 + "left": 1828.2518626642654, + "top": 392.10255910317755 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2398,7 +2387,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Merqury c path" + "newname": "gfastats c path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2411,16 +2400,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"merqury/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/c/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "8541357f-1955-4078-b4a6-caf441401b66", + "uuid": "332cab3a-8c63-4bf5-8b76-09aa0e7c9318", "when": null, "workflow_outputs": [ { - "label": "Merqury c path", + "label": "gfastats c path", "output_name": "out1", - "uuid": "080250d0-9459-42f6-bc7b-c7e4534cfdbc" + "uuid": "ff081fcb-2fe0-43d7-87d3-15ae5360cd45" } ] }, @@ -2437,10 +2426,14 @@ "components_2|param_type|component_value": { "id": 1, "output_name": "output" + }, + "components_4|param_type|component_value": { + "id": 3, + "output_name": "output" } }, "inputs": [], - "label": null, + "label": "Genomescope", "name": "Compose text parameter value", "outputs": [ { @@ -2449,8 +2442,8 @@ } ], "position": { - "left": 2676.2542643118272, - "top": 1327.8001744231776 + "left": 2009.9695164575119, + "top": 1334.8267703356214 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2460,7 +2453,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Merqury p path" + "newname": "Genomescope path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2473,16 +2466,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"merqury/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"genomescope/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_genomescope_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "1b2abf5e-d56e-499a-83da-d503a34f981c", + "uuid": "7f8a1f9c-d3a5-498b-a517-eb84fcac6373", "when": null, "workflow_outputs": [ { - "label": "Merqury p path", + "label": "Genomescope path", "output_name": "out1", - "uuid": "2de757c6-b4ee-44a5-ae36-46b97d7713d8" + "uuid": "ea782ff8-9dcf-428c-8661-0f0f00f3231f" } ] }, @@ -2493,16 +2486,16 @@ "id": 11, "input_connections": { "components_0|param_type|component_value": { - "id": 6, + "id": 5, "output_name": "out1" }, - "components_1|param_type|component_value": { - "id": 3, + "components_2|param_type|component_value": { + "id": 2, "output_name": "output" } }, "inputs": [], - "label": "Intermediate haplotype", + "label": "Merqury", "name": "Compose text parameter value", "outputs": [ { @@ -2511,8 +2504,8 @@ } ], "position": { - "left": 1244.8133244797375, - "top": 1748.2516888238306 + "left": 2305.0307369613033, + "top": 1371.303115252299 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2522,7 +2515,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Intermediate haplotype path" + "newname": "Merqury c path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2535,16 +2528,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"merqury/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "d96ad636-0a3d-4151-8b35-bfeea8272ecc", + "uuid": "7a3e8a9f-c7d6-4955-be10-82174ee0b11a", "when": null, "workflow_outputs": [ { - "label": "Intermediate haplotype path", + "label": "Merqury c path", "output_name": "out1", - "uuid": "863497a1-3a47-4549-bb55-bffad3883a39" + "uuid": "080250d0-9459-42f6-bc7b-c7e4534cfdbc" } ] }, @@ -2555,7 +2548,7 @@ "id": 12, "input_connections": { "components_0|param_type|component_value": { - "id": 6, + "id": 5, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -2564,7 +2557,7 @@ } }, "inputs": [], - "label": "Meryl", + "label": null, "name": "Compose text parameter value", "outputs": [ { @@ -2573,8 +2566,8 @@ } ], "position": { - "left": 1682.7821109186366, - "top": 2734.84891509482 + "left": 2540.368844799535, + "top": 1498.359788467742 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2584,7 +2577,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Meryl Path" + "newname": "Merqury p path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2597,16 +2590,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"meryl/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"merqury/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "998fae4c-35aa-4369-8c1b-960614467da3", + "uuid": "e79e5ce6-f4bb-4801-9591-73b6432434df", "when": null, "workflow_outputs": [ { - "label": "Meryl Path", + "label": "Merqury p path", "output_name": "out1", - "uuid": "272b4efc-7a5c-480c-9ec6-660d9a8b89f2" + "uuid": "2de757c6-b4ee-44a5-ae36-46b97d7713d8" } ] }, @@ -2617,16 +2610,16 @@ "id": 13, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, - "components_2|param_type|component_value": { - "id": 1, + "components_1|param_type|component_value": { + "id": 3, "output_name": "output" } }, "inputs": [], - "label": "Busco c", + "label": "Intermediate haplotype", "name": "Compose text parameter value", "outputs": [ { @@ -2635,14 +2628,21 @@ } ], "position": { - "left": 1825.5251219377596, - "top": 59.95290260356503 + "left": 1244.8133244797377, + "top": 1748.2516888238306 }, "post_job_actions": { "HideDatasetActionout1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out1" + }, + "RenameDatasetActionout1": { + "action_arguments": { + "newname": "Intermediate haplotype path" + }, + "action_type": "RenameDatasetAction", + "output_name": "out1" } }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1", @@ -2652,16 +2652,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/c/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "ee07c83e-5711-4f4f-81ec-9e0c2105d6f7", + "uuid": "367faf09-f9cc-4b0d-beba-ae07a7157d30", "when": null, "workflow_outputs": [ { - "label": "Busco c path", + "label": "Intermediate haplotype path", "output_name": "out1", - "uuid": "ecf1ee1e-5613-44b4-992f-ed37ecf48548" + "uuid": "863497a1-3a47-4549-bb55-bffad3883a39" } ] }, @@ -2672,7 +2672,7 @@ "id": 14, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -2681,7 +2681,7 @@ } }, "inputs": [], - "label": "gfastats c ", + "label": "HIfiasm", "name": "Compose text parameter value", "outputs": [ { @@ -2690,8 +2690,8 @@ } ], "position": { - "left": 1847.105149048301, - "top": 376.5848460358178 + "left": 1670.4414723317645, + "top": 1968.0696604856594 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2701,7 +2701,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats c path" + "newname": "HIfiasm Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2714,16 +2714,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/c/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"hifiasm/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "7ff27452-4035-4210-848c-12a861351e01", + "uuid": "362fa43b-397f-4de0-ba27-eef2d6776a66", "when": null, "workflow_outputs": [ { - "label": "gfastats c path", + "label": "HIfiasm Path", "output_name": "out1", - "uuid": "ff081fcb-2fe0-43d7-87d3-15ae5360cd45" + "uuid": "ab6b40b7-c5e9-401d-b691-d12d86692ea4" } ] }, @@ -2734,7 +2734,7 @@ "id": 15, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -2743,7 +2743,7 @@ } }, "inputs": [], - "label": "Busco s2", + "label": "purge_dups p1", "name": "Compose text parameter value", "outputs": [ { @@ -2752,8 +2752,8 @@ } ], "position": { - "left": 2053.2855507507265, - "top": 77.99109148095542 + "left": 1686.4395901180555, + "top": 2214.7096632841826 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2763,7 +2763,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Busco s2 Path" + "newname": "purge_dups Path p1" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2776,16 +2776,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/p1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "b717aa49-1586-47a7-bae4-1acafdd708d9", + "uuid": "6aa4108d-fee5-44ea-a9c3-56f3e3bb8e41", "when": null, "workflow_outputs": [ { - "label": "Busco s2 Path", + "label": "purge_dups Path p1", "output_name": "out1", - "uuid": "2545849e-3a9f-4b93-acfd-9bbda9b11002" + "uuid": "ee7b6407-c087-4eed-a0d8-6019240ffcf2" } ] }, @@ -2796,7 +2796,7 @@ "id": 16, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -2805,7 +2805,7 @@ } }, "inputs": [], - "label": "gfastats s1", + "label": "purge_dups p2", "name": "Compose text parameter value", "outputs": [ { @@ -2814,8 +2814,8 @@ } ], "position": { - "left": 2092.0703863384133, - "top": 378.8244263325762 + "left": 1991.8492322053903, + "top": 2212.3456427728447 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2825,7 +2825,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats s1 path" + "newname": "purge_dups Path p2" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2838,16 +2838,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/p2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "d8714313-14f5-4bfa-9916-13ba9f6cc153", + "uuid": "36ba00ec-3c84-413d-a9e0-af276b01cc32", "when": null, "workflow_outputs": [ { - "label": "gfastats s1 path", + "label": "purge_dups Path p2", "output_name": "out1", - "uuid": "3f789e73-69d4-4d1b-9f8b-986057199d0f" + "uuid": "c2f04aec-0bd9-4413-8a0e-5a92ac84a9bc" } ] }, @@ -2858,20 +2858,16 @@ "id": 17, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, "components_2|param_type|component_value": { "id": 1, "output_name": "output" - }, - "components_4|param_type|component_value": { - "id": 3, - "output_name": "output" } }, "inputs": [], - "label": "Pretext s1", + "label": "Meryl", "name": "Compose text parameter value", "outputs": [ { @@ -2880,8 +2876,8 @@ } ], "position": { - "left": 1893.8411346476478, - "top": 1007.2273184880099 + "left": 1682.7821109186366, + "top": 2734.84891509482 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2891,7 +2887,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Pretext s1 path" + "newname": "Meryl Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2904,16 +2900,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"pretext/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"meryl/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "9b865ce1-fc13-4fc0-a7ca-c34b32f5268e", + "uuid": "ab1e1704-39c5-4510-a961-1393fc5e78b6", "when": null, "workflow_outputs": [ { - "label": "Pretext s1 path", + "label": "Meryl Path", "output_name": "out1", - "uuid": "36a3f1e9-402e-48cd-b70f-80901b5f3ff0" + "uuid": "272b4efc-7a5c-480c-9ec6-660d9a8b89f2" } ] }, @@ -2933,7 +2929,7 @@ } }, "inputs": [], - "label": "Busco s1", + "label": "Busco s2", "name": "Compose text parameter value", "outputs": [ { @@ -2942,8 +2938,8 @@ } ], "position": { - "left": 2304.3967549834692, - "top": 66.89734261967101 + "left": 2053.2855507507265, + "top": 77.99109148095545 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2953,7 +2949,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Busco s1 Path" + "newname": "Busco s2 Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2969,13 +2965,13 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "63b266bd-78b7-4154-9e3d-94423dc670b2", + "uuid": "f7ce5464-5c9e-4552-961c-94f048dd89a6", "when": null, "workflow_outputs": [ { - "label": "Busco s1 Path", + "label": "Busco s2 Path", "output_name": "out1", - "uuid": "edd1d288-7361-4f2e-9702-b4a548d7c4b1" + "uuid": "2545849e-3a9f-4b93-acfd-9bbda9b11002" } ] }, @@ -2999,7 +2995,7 @@ } }, "inputs": [], - "label": "Pretext s2", + "label": "Pretext s1", "name": "Compose text parameter value", "outputs": [ { @@ -3008,8 +3004,8 @@ } ], "position": { - "left": 2137.087731254458, - "top": 1010.300119764829 + "left": 1913.9057330959263, + "top": 901.6138446229584 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3019,7 +3015,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Pretext s2 path" + "newname": "Pretext s1 path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3035,13 +3031,13 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"pretext/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "960f659c-abbf-4310-af81-316ebf3d72a2", + "uuid": "a2b64286-90ae-4673-ba05-c0001cd2b2f0", "when": null, "workflow_outputs": [ { - "label": "Pretext s2 path", + "label": "Pretext s1 path", "output_name": "out1", - "uuid": "18fe7a6c-b603-448f-8448-e5c422aeb6b7" + "uuid": "36a3f1e9-402e-48cd-b70f-80901b5f3ff0" } ] }, @@ -3061,7 +3057,7 @@ } }, "inputs": [], - "label": "gfastats s2", + "label": "gfastats s1", "name": "Compose text parameter value", "outputs": [ { @@ -3070,8 +3066,8 @@ } ], "position": { - "left": 2341.810030403245, - "top": 380.612619764829 + "left": 2092.0703863384133, + "top": 378.82442633257597 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3081,7 +3077,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats s2 path" + "newname": "gfastats s1 path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3094,16 +3090,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "a33409a7-f413-4804-a365-bae779c7ef0f", + "uuid": "2fea4e98-caa4-4831-8bdf-dfb18a6fd862", "when": null, "workflow_outputs": [ { - "label": "gfastats s2 path", + "label": "gfastats s1 path", "output_name": "out1", - "uuid": "a2a42ac1-ecbc-4371-986c-400faa618d46" + "uuid": "3f789e73-69d4-4d1b-9f8b-986057199d0f" } ] }, @@ -3123,7 +3119,7 @@ } }, "inputs": [], - "label": "Busco p1", + "label": "Busco s1", "name": "Compose text parameter value", "outputs": [ { @@ -3132,8 +3128,8 @@ } ], "position": { - "left": 2579.4140634606147, - "top": 70.59525890676582 + "left": 2304.3967549834692, + "top": 66.89734261967101 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3143,7 +3139,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Busco p1 Path" + "newname": "Busco s1 Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3159,13 +3155,13 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "2c5eef41-840a-4c44-8d26-b9f31eac6dfa", + "uuid": "0481aa2c-8d16-4032-afae-a6dca8df435b", "when": null, "workflow_outputs": [ { - "label": "Busco p1 Path", + "label": "Busco s1 Path", "output_name": "out1", - "uuid": "941dea07-456e-4f6e-b7ec-5aa1231de628" + "uuid": "edd1d288-7361-4f2e-9702-b4a548d7c4b1" } ] }, @@ -3182,10 +3178,14 @@ "components_2|param_type|component_value": { "id": 1, "output_name": "output" + }, + "components_4|param_type|component_value": { + "id": 3, + "output_name": "output" } }, "inputs": [], - "label": "gfastats p1", + "label": "Pretext s2", "name": "Compose text parameter value", "outputs": [ { @@ -3194,14 +3194,21 @@ } ], "position": { - "left": 2616.8792643118272, - "top": 376.4980303583458 + "left": 2137.087731254458, + "top": 1010.3001197648291 }, "post_job_actions": { "HideDatasetActionout1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out1" + }, + "RenameDatasetActionout1": { + "action_arguments": { + "newname": "Pretext s2 path" + }, + "action_type": "RenameDatasetAction", + "output_name": "out1" } }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1", @@ -3211,16 +3218,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"pretext/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "8a853c96-bccc-4ded-9bca-7a66f2b9fb97", + "uuid": "5241079d-e11f-46fc-8b8e-ae2d5303dfa3", "when": null, "workflow_outputs": [ { - "label": "gfastats p1 path", + "label": "Pretext s2 path", "output_name": "out1", - "uuid": "18c35444-cd38-4b03-9fae-c4c9fff1050c" + "uuid": "18fe7a6c-b603-448f-8448-e5c422aeb6b7" } ] }, @@ -3240,7 +3247,7 @@ } }, "inputs": [], - "label": "Busco p2", + "label": "gfastats s2", "name": "Compose text parameter value", "outputs": [ { @@ -3249,8 +3256,8 @@ } ], "position": { - "left": 2865.9593643001667, - "top": 77.97373176160781 + "left": 2341.8100304032446, + "top": 380.6126197648291 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3260,7 +3267,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Busco p2 Path" + "newname": "gfastats s2 path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3273,16 +3280,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "e1fc82f5-5145-4865-882a-f16da5ae03b3", + "uuid": "4b26292f-d1bc-44b2-901c-ad0f4037a83c", "when": null, "workflow_outputs": [ { - "label": "Busco p2 Path", + "label": "gfastats s2 path", "output_name": "out1", - "uuid": "39e8994e-6ad0-45d1-a130-f2edcc55b213" + "uuid": "a2a42ac1-ecbc-4371-986c-400faa618d46" } ] }, @@ -3302,7 +3309,7 @@ } }, "inputs": [], - "label": "gfastats p2", + "label": "Busco p1", "name": "Compose text parameter value", "outputs": [ { @@ -3311,8 +3318,8 @@ } ], "position": { - "left": 2866.1328134606147, - "top": 391.6195814165314 + "left": 2579.414063460615, + "top": 70.59525890676582 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3322,7 +3329,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats p2 path" + "newname": "Busco p1 Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3335,16 +3342,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "0bdf6e69-f713-4630-902c-7731475b18d9", + "uuid": "bd9f7a63-ab8b-4bc4-b776-9eeb0b50dcdc", "when": null, "workflow_outputs": [ { - "label": "gfastats p2 path", + "label": "Busco p1 Path", "output_name": "out1", - "uuid": "25c99a74-4079-45a5-809b-ad7657afda9b" + "uuid": "941dea07-456e-4f6e-b7ec-5aa1231de628" } ] }, @@ -3359,16 +3366,12 @@ "output_name": "out1" }, "components_2|param_type|component_value": { - "id": 3, - "output_name": "output" - }, - "components_4|param_type|component_value": { "id": 1, "output_name": "output" } }, "inputs": [], - "label": "Busco Purged Hap", + "label": "gfastats p1", "name": "Compose text parameter value", "outputs": [ { @@ -3377,21 +3380,14 @@ } ], "position": { - "left": 3212.92256007387, - "top": 0 + "left": 2616.8792643118272, + "top": 376.49803035834566 }, "post_job_actions": { "HideDatasetActionout1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out1" - }, - "RenameDatasetActionout1": { - "action_arguments": { - "newname": "Busco purged hap Path" - }, - "action_type": "RenameDatasetAction", - "output_name": "out1" } }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1", @@ -3401,16 +3397,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "3ae46b41-80a4-4249-addb-24960c9308ab", + "uuid": "1dca98b3-09da-4aa9-81d0-750747bbe668", "when": null, "workflow_outputs": [ { - "label": "Busco purged hap Path", + "label": "gfastats p1 path", "output_name": "out1", - "uuid": "836dbc1d-d19d-4c3c-bdac-e4c102061c0c" + "uuid": "18c35444-cd38-4b03-9fae-c4c9fff1050c" } ] }, @@ -3425,16 +3421,12 @@ "output_name": "out1" }, "components_2|param_type|component_value": { - "id": 3, - "output_name": "output" - }, - "components_4|param_type|component_value": { "id": 1, "output_name": "output" } }, "inputs": [], - "label": "gfastats purged hap", + "label": "Busco p2", "name": "Compose text parameter value", "outputs": [ { @@ -3443,8 +3435,8 @@ } ], "position": { - "left": 3239.7645671561722, - "top": 407.9932227245923 + "left": 2865.9593643001667, + "top": 77.97373176160772 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3454,7 +3446,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats purged hap Path" + "newname": "Busco p2 Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3467,16 +3459,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "4b815729-433e-4be0-8bd9-e342dd64be24", + "uuid": "2634407a-ac81-4450-a624-02618d565db9", "when": null, "workflow_outputs": [ { - "label": "gfastats purged hap Path", + "label": "Busco p2 Path", "output_name": "out1", - "uuid": "cc25b12e-e9c0-4b81-820f-9ac535819451" + "uuid": "39e8994e-6ad0-45d1-a130-f2edcc55b213" } ] }, @@ -3487,7 +3479,7 @@ "id": 27, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 7, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -3496,7 +3488,7 @@ } }, "inputs": [], - "label": "Bionano", + "label": "gfastats p2", "name": "Compose text parameter value", "outputs": [ { @@ -3505,8 +3497,8 @@ } ], "position": { - "left": 1657.9036346476478, - "top": 1700.6473642552671 + "left": 2866.132813460615, + "top": 391.6195814165312 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3516,7 +3508,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Bionano Path" + "newname": "gfastats p2 path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3529,16 +3521,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"bionano/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "39840a9f-bd21-478d-9ed9-e5dc905e9e0e", + "uuid": "4495a0aa-013d-4011-b65b-36b8a8619dc1", "when": null, "workflow_outputs": [ { - "label": "Bionano Path", + "label": "gfastats p2 path", "output_name": "out1", - "uuid": "8f495388-20b4-4017-9e49-e159ca40b6c9" + "uuid": "25c99a74-4079-45a5-809b-ad7657afda9b" } ] }, @@ -3549,16 +3541,20 @@ "id": 28, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 7, "output_name": "out1" }, "components_2|param_type|component_value": { + "id": 3, + "output_name": "output" + }, + "components_4|param_type|component_value": { "id": 1, "output_name": "output" } }, "inputs": [], - "label": "HIfiasm", + "label": "Busco Purged Hap", "name": "Compose text parameter value", "outputs": [ { @@ -3567,8 +3563,8 @@ } ], "position": { - "left": 1675.993908376659, - "top": 1943.9112693392224 + "left": 3212.9225600738696, + "top": 0.0 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3578,7 +3574,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "HIfiasm Path" + "newname": "Busco purged hap Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3591,16 +3587,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"hIfiasm/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "aa52fcc6-fe52-41fc-9e38-525b0c564989", + "uuid": "42fd914a-b5c7-4969-8298-11eec74fb080", "when": null, "workflow_outputs": [ { - "label": "HIfiasm Path", + "label": "Busco purged hap Path", "output_name": "out1", - "uuid": "ab6b40b7-c5e9-401d-b691-d12d86692ea4" + "uuid": "836dbc1d-d19d-4c3c-bdac-e4c102061c0c" } ] }, @@ -3611,16 +3607,20 @@ "id": 29, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 7, "output_name": "out1" }, "components_2|param_type|component_value": { + "id": 3, + "output_name": "output" + }, + "components_4|param_type|component_value": { "id": 1, "output_name": "output" } }, "inputs": [], - "label": "purge_dups p1", + "label": "gfastats purged hap", "name": "Compose text parameter value", "outputs": [ { @@ -3629,8 +3629,8 @@ } ], "position": { - "left": 1682.0696884174565, - "top": 2221.28145457317 + "left": 3239.7645671561727, + "top": 407.9932227245922 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3640,7 +3640,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "purge_dups Path p1" + "newname": "gfastats purged hap Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3653,16 +3653,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/p1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "d7d9344e-f9b6-4337-a47b-c1ad5cac58bf", + "uuid": "ba73d7c1-0497-4863-84b1-5cd362610150", "when": null, "workflow_outputs": [ { - "label": "purge_dups Path p1", + "label": "gfastats purged hap Path", "output_name": "out1", - "uuid": "ee7b6407-c087-4eed-a0d8-6019240ffcf2" + "uuid": "cc25b12e-e9c0-4b81-820f-9ac535819451" } ] }, @@ -3673,7 +3673,7 @@ "id": 30, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 13, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -3682,7 +3682,7 @@ } }, "inputs": [], - "label": "Salsa", + "label": "Bionano", "name": "Compose text parameter value", "outputs": [ { @@ -3691,8 +3691,8 @@ } ], "position": { - "left": 1685.5948295520323, - "top": 2496.56766509482 + "left": 1689.3858121269682, + "top": 1654.5706887786591 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3702,7 +3702,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Salsa Path" + "newname": "Bionano Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3715,16 +3715,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"salsa/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"bionano/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "eab68aa2-01eb-45bc-87a4-9c7e8e7e6577", + "uuid": "61dd37d9-e81c-4704-adc2-ad6b3d317dc0", "when": null, "workflow_outputs": [ { - "label": "Salsa Path", + "label": "Bionano Path", "output_name": "out1", - "uuid": "11deb798-17f2-4dce-a4d8-cd878961debf" + "uuid": "8f495388-20b4-4017-9e49-e159ca40b6c9" } ] }, @@ -3735,7 +3735,7 @@ "id": 31, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 13, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -3744,7 +3744,7 @@ } }, "inputs": [], - "label": "purge_dups p2", + "label": "Yahs", "name": "Compose text parameter value", "outputs": [ { @@ -3753,8 +3753,8 @@ } ], "position": { - "left": 2035.5249226421374, - "top": 2240.998127990509 + "left": 1685.5948295520325, + "top": 2496.56766509482 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3764,7 +3764,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "purge_dups Path p2" + "newname": "Yahs Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3777,16 +3777,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/p2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"yahs/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "2bca5b05-21ad-4335-9fd8-b8f4162685e0", + "uuid": "18f86032-138a-45c4-91eb-5e3f634a6a6a", "when": null, "workflow_outputs": [ { - "label": "purge_dups Path p2", + "label": "Yahs Path", "output_name": "out1", - "uuid": "c2f04aec-0bd9-4413-8a0e-5a92ac84a9bc" + "uuid": "15fc237e-52e2-4b5e-ab70-c78dc796323e" } ] }, @@ -3797,7 +3797,7 @@ "id": 32, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 13, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -3819,8 +3819,8 @@ } ], "position": { - "left": 2032.121191451342, - "top": 2552.5327778776164 + "left": 1985.6110781180814, + "top": 2505.1114842682364 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3846,7 +3846,7 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "6e87aae8-216f-424f-a2b1-9897b7162899", + "uuid": "a0544385-c308-4afa-add0-9f10551bc220", "when": null, "workflow_outputs": [ { @@ -3858,7 +3858,7 @@ } }, "tags": "", - "uuid": "b217526e-f8f5-491c-ab6a-252ad3359b89" + "uuid": "88019a93-095c-4586-8242-3555820deea4" }, "tool_id": null, "type": "subworkflow", @@ -5605,6 +5605,6 @@ } }, "tags": [], - "uuid": "265b3c49-46fd-4429-823f-2951ae38a80b", - "version": 6 + "uuid": "21d48acc-3e73-462b-9923-1a36f1a8272b", + "version": 4 } \ No newline at end of file diff --git a/workflows/VGP-assembly-v2/Export-WF6/Export_WF6_Purgedups.ga b/workflows/VGP-assembly-v2/Export-WF6/Export_WF6_Purgedups.ga index 695cda55c..2e4e235b5 100644 --- a/workflows/VGP-assembly-v2/Export-WF6/Export_WF6_Purgedups.ga +++ b/workflows/VGP-assembly-v2/Export-WF6/Export_WF6_Purgedups.ga @@ -5413,6 +5413,6 @@ } }, "tags": [], - "uuid": "c6978d3a-6106-4116-bff9-f05b6c9be4a5", - "version": 6 + "uuid": "62418626-b6cd-4428-be8b-1572aa6188f5", + "version": 2 } \ No newline at end of file diff --git a/workflows/VGP-assembly-v2/Export-WF6b/Export_WF6b_Purgedups_Single_haplotype.ga b/workflows/VGP-assembly-v2/Export-WF6b/Export_WF6b_Purgedups_Single_haplotype.ga index 97d83cc9c..6bd33b69a 100644 --- a/workflows/VGP-assembly-v2/Export-WF6b/Export_WF6b_Purgedups_Single_haplotype.ga +++ b/workflows/VGP-assembly-v2/Export-WF6b/Export_WF6b_Purgedups_Single_haplotype.ga @@ -1301,14 +1301,14 @@ "name": "Input parameter", "outputs": [], "position": { - "left": 0, + "left": 0.0, "top": 1412.1079716128102 }, "tool_id": null, "tool_state": "{\"parameter_type\": \"text\", \"optional\": false}", "tool_version": null, "type": "parameter_input", - "uuid": "c38f6049-408f-40e3-9737-7a8c873d7da1", + "uuid": "5243360a-97ac-42be-803d-e177f0bd6cf7", "when": null, "workflow_outputs": [] }, @@ -1328,14 +1328,14 @@ "name": "Input parameter", "outputs": [], "position": { - "left": 3.0251037183103424, + "left": 3.02510371831022, "top": 1524.9876379842785 }, "tool_id": null, "tool_state": "{\"parameter_type\": \"text\", \"optional\": false}", "tool_version": null, "type": "parameter_input", - "uuid": "df2514d2-74f2-4579-a18d-64de22d480ba", + "uuid": "d9f57a5a-edd3-4b17-9f5d-c06582b1e9e3", "when": null, "workflow_outputs": [] }, @@ -1355,14 +1355,14 @@ "name": "Input parameter", "outputs": [], "position": { - "left": 5.5771931247935616, + "left": 5.577193124793666, "top": 1605.2654481521888 }, "tool_id": null, "tool_state": "{\"parameter_type\": \"text\", \"optional\": false}", "tool_version": null, "type": "parameter_input", - "uuid": "7679e681-5422-4cad-a0e0-3554db0551b4", + "uuid": "792e20d0-092a-43c7-a636-0c95f41c7639", "when": null, "workflow_outputs": [] }, @@ -1382,14 +1382,14 @@ "name": "Input parameter", "outputs": [], "position": { - "left": 3.910500647239937, - "top": 1708.7029117132897 + "left": 3.910500647240042, + "top": 1708.7029117132895 }, "tool_id": null, "tool_state": "{\"parameter_type\": \"text\", \"optional\": false}", "tool_version": null, "type": "parameter_input", - "uuid": "04c39f38-970e-451b-a650-3bb630d8d4f8", + "uuid": "8225fb62-0715-44ce-a201-b06bd726bff6", "when": null, "workflow_outputs": [] }, @@ -1422,7 +1422,7 @@ } ], "position": { - "left": 517.0355871896256, + "left": 517.0355871896254, "top": 1166.2550557781217 }, "post_job_actions": { @@ -1444,7 +1444,7 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"species/\"}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/assembly_vgp_\"}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 6, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_2.0/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "b86485d7-063e-4c28-ba5d-cfd34922cf28", + "uuid": "e58922bb-abca-4e71-bb1c-d6b373a00a75", "when": null, "workflow_outputs": [ { @@ -1475,8 +1475,8 @@ } ], "position": { - "left": 888.8403252145398, - "top": 1244.1872541863545 + "left": 901.6183860897531, + "top": 1245.8135776000238 }, "post_job_actions": { "HideDatasetActionout1": { @@ -1495,7 +1495,7 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"evaluation/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "6582a456-fdb0-4e1d-a717-858d0ff20d27", + "uuid": "f8f925a3-2848-4cc2-bfe8-d0ed8e19a23b", "when": null, "workflow_outputs": [ { @@ -1526,7 +1526,7 @@ } ], "position": { - "left": 890.2647477831423, + "left": 890.2647477831424, "top": 1548.1994901006497 }, "post_job_actions": { @@ -1553,7 +1553,7 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"intermediates/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "d7ab3988-5f01-499d-8290-274fef8c5dec", + "uuid": "61ba85f0-07a3-4c08-8ac7-514789c58a46", "when": null, "workflow_outputs": [ { @@ -1588,8 +1588,8 @@ } ], "position": { - "left": 1271.5669465063231, - "top": 1060.7515977265828 + "left": 1263.6733559531035, + "top": 1049.7775118609336 }, "post_job_actions": { "HideDatasetActionout1": { @@ -1608,7 +1608,7 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "57658471-57f2-4eae-8f84-c9f1f4357560", + "uuid": "07aed45a-82a0-4765-9164-2a3b28e13f78", "when": null, "workflow_outputs": [ { @@ -1631,14 +1631,10 @@ "components_2|param_type|component_value": { "id": 1, "output_name": "output" - }, - "components_4|param_type|component_value": { - "id": 3, - "output_name": "output" } }, "inputs": [], - "label": "Genomescope", + "label": "Busco c", "name": "Compose text parameter value", "outputs": [ { @@ -1647,21 +1643,14 @@ } ], "position": { - "left": 2071.028743964346, - "top": 1316.584827816368 + "left": 1825.5251219377596, + "top": 59.95290260356501 }, "post_job_actions": { "HideDatasetActionout1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out1" - }, - "RenameDatasetActionout1": { - "action_arguments": { - "newname": "Genomescope path" - }, - "action_type": "RenameDatasetAction", - "output_name": "out1" } }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1", @@ -1671,16 +1660,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"genomescope/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_genomescope_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/c/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "f0974de0-9a40-4e2a-afc8-268bb3a21dd1", + "uuid": "4f93de52-3123-496e-a925-dca6003206c6", "when": null, "workflow_outputs": [ { - "label": "Genomescope path", + "label": "Busco c path", "output_name": "out1", - "uuid": "ea782ff8-9dcf-428c-8661-0f0f00f3231f" + "uuid": "ecf1ee1e-5613-44b4-992f-ed37ecf48548" } ] }, @@ -1695,12 +1684,12 @@ "output_name": "out1" }, "components_2|param_type|component_value": { - "id": 2, + "id": 1, "output_name": "output" } }, "inputs": [], - "label": "Merqury", + "label": "gfastats c ", "name": "Compose text parameter value", "outputs": [ { @@ -1709,8 +1698,8 @@ } ], "position": { - "left": 2408.667576170503, - "top": 1325.4738239975713 + "left": 1828.251862664266, + "top": 392.1025591031774 }, "post_job_actions": { "HideDatasetActionout1": { @@ -1720,7 +1709,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Merqury c path" + "newname": "gfastats c path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -1733,16 +1722,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"merqury/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/c/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "8541357f-1955-4078-b4a6-caf441401b66", + "uuid": "61b756a5-6819-4c6a-90a2-d49c6ed656e0", "when": null, "workflow_outputs": [ { - "label": "Merqury c path", + "label": "gfastats c path", "output_name": "out1", - "uuid": "080250d0-9459-42f6-bc7b-c7e4534cfdbc" + "uuid": "ff081fcb-2fe0-43d7-87d3-15ae5360cd45" } ] }, @@ -1759,10 +1748,14 @@ "components_2|param_type|component_value": { "id": 1, "output_name": "output" + }, + "components_4|param_type|component_value": { + "id": 3, + "output_name": "output" } }, "inputs": [], - "label": null, + "label": "Genomescope", "name": "Compose text parameter value", "outputs": [ { @@ -1771,8 +1764,8 @@ } ], "position": { - "left": 2676.2542643118272, - "top": 1327.8001744231776 + "left": 2009.9695164575114, + "top": 1334.8267703356214 }, "post_job_actions": { "HideDatasetActionout1": { @@ -1782,7 +1775,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Merqury p path" + "newname": "Genomescope path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -1795,16 +1788,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"merqury/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"genomescope/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_genomescope_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "1b2abf5e-d56e-499a-83da-d503a34f981c", + "uuid": "6abe608b-35f0-4a12-b278-b496525e89a8", "when": null, "workflow_outputs": [ { - "label": "Merqury p path", + "label": "Genomescope path", "output_name": "out1", - "uuid": "2de757c6-b4ee-44a5-ae36-46b97d7713d8" + "uuid": "ea782ff8-9dcf-428c-8661-0f0f00f3231f" } ] }, @@ -1815,16 +1808,16 @@ "id": 11, "input_connections": { "components_0|param_type|component_value": { - "id": 6, + "id": 5, "output_name": "out1" }, - "components_1|param_type|component_value": { - "id": 3, + "components_2|param_type|component_value": { + "id": 2, "output_name": "output" } }, "inputs": [], - "label": "Intermediate haplotype", + "label": "Merqury", "name": "Compose text parameter value", "outputs": [ { @@ -1833,8 +1826,8 @@ } ], "position": { - "left": 1244.8133244797375, - "top": 1748.2516888238306 + "left": 2305.030736961304, + "top": 1371.303115252299 }, "post_job_actions": { "HideDatasetActionout1": { @@ -1844,7 +1837,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Intermediate haplotype path" + "newname": "Merqury c path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -1857,16 +1850,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"merqury/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "d96ad636-0a3d-4151-8b35-bfeea8272ecc", + "uuid": "f0d4c70a-3934-4b32-b283-cf861e274de4", "when": null, "workflow_outputs": [ { - "label": "Intermediate haplotype path", + "label": "Merqury c path", "output_name": "out1", - "uuid": "863497a1-3a47-4549-bb55-bffad3883a39" + "uuid": "080250d0-9459-42f6-bc7b-c7e4534cfdbc" } ] }, @@ -1877,7 +1870,7 @@ "id": 12, "input_connections": { "components_0|param_type|component_value": { - "id": 6, + "id": 5, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -1886,7 +1879,7 @@ } }, "inputs": [], - "label": "Meryl", + "label": null, "name": "Compose text parameter value", "outputs": [ { @@ -1895,8 +1888,8 @@ } ], "position": { - "left": 1682.7821109186366, - "top": 2734.84891509482 + "left": 2540.3688447995355, + "top": 1498.359788467742 }, "post_job_actions": { "HideDatasetActionout1": { @@ -1906,7 +1899,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Meryl Path" + "newname": "Merqury p path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -1919,16 +1912,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"meryl/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"merqury/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "998fae4c-35aa-4369-8c1b-960614467da3", + "uuid": "fb77d9cb-bcee-47ff-9e6a-043d04993037", "when": null, "workflow_outputs": [ { - "label": "Meryl Path", + "label": "Merqury p path", "output_name": "out1", - "uuid": "272b4efc-7a5c-480c-9ec6-660d9a8b89f2" + "uuid": "2de757c6-b4ee-44a5-ae36-46b97d7713d8" } ] }, @@ -1939,16 +1932,16 @@ "id": 13, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, - "components_2|param_type|component_value": { - "id": 1, + "components_1|param_type|component_value": { + "id": 3, "output_name": "output" } }, "inputs": [], - "label": "Busco c", + "label": "Intermediate haplotype", "name": "Compose text parameter value", "outputs": [ { @@ -1957,14 +1950,21 @@ } ], "position": { - "left": 1825.5251219377596, - "top": 59.95290260356503 + "left": 1244.8133244797373, + "top": 1748.2516888238304 }, "post_job_actions": { "HideDatasetActionout1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out1" + }, + "RenameDatasetActionout1": { + "action_arguments": { + "newname": "Intermediate haplotype path" + }, + "action_type": "RenameDatasetAction", + "output_name": "out1" } }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1", @@ -1974,16 +1974,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/c/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "ee07c83e-5711-4f4f-81ec-9e0c2105d6f7", + "uuid": "e2134372-5b2d-4f50-bb67-b7d770f2482e", "when": null, "workflow_outputs": [ { - "label": "Busco c path", + "label": "Intermediate haplotype path", "output_name": "out1", - "uuid": "ecf1ee1e-5613-44b4-992f-ed37ecf48548" + "uuid": "863497a1-3a47-4549-bb55-bffad3883a39" } ] }, @@ -1994,7 +1994,7 @@ "id": 14, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -2003,7 +2003,7 @@ } }, "inputs": [], - "label": "gfastats c ", + "label": "HIfiasm", "name": "Compose text parameter value", "outputs": [ { @@ -2012,8 +2012,8 @@ } ], "position": { - "left": 1847.105149048301, - "top": 376.5848460358178 + "left": 1670.441472331764, + "top": 1968.0696604856596 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2023,7 +2023,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats c path" + "newname": "HIfiasm Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2036,16 +2036,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/c/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"hifiasm/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "7ff27452-4035-4210-848c-12a861351e01", + "uuid": "517c1577-442c-463e-941a-9e8f650333ec", "when": null, "workflow_outputs": [ { - "label": "gfastats c path", + "label": "HIfiasm Path", "output_name": "out1", - "uuid": "ff081fcb-2fe0-43d7-87d3-15ae5360cd45" + "uuid": "ab6b40b7-c5e9-401d-b691-d12d86692ea4" } ] }, @@ -2056,7 +2056,7 @@ "id": 15, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -2065,7 +2065,7 @@ } }, "inputs": [], - "label": "Busco s2", + "label": "purge_dups p1", "name": "Compose text parameter value", "outputs": [ { @@ -2074,8 +2074,8 @@ } ], "position": { - "left": 2053.2855507507265, - "top": 77.99109148095542 + "left": 1686.439590118056, + "top": 2214.7096632841826 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2085,7 +2085,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Busco s2 Path" + "newname": "purge_dups Path p1" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2098,16 +2098,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/p1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "b717aa49-1586-47a7-bae4-1acafdd708d9", + "uuid": "571f0477-03ec-4482-8348-340d94603146", "when": null, "workflow_outputs": [ { - "label": "Busco s2 Path", + "label": "purge_dups Path p1", "output_name": "out1", - "uuid": "2545849e-3a9f-4b93-acfd-9bbda9b11002" + "uuid": "ee7b6407-c087-4eed-a0d8-6019240ffcf2" } ] }, @@ -2118,7 +2118,7 @@ "id": 16, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -2127,7 +2127,7 @@ } }, "inputs": [], - "label": "gfastats s1", + "label": "purge_dups p2", "name": "Compose text parameter value", "outputs": [ { @@ -2136,8 +2136,8 @@ } ], "position": { - "left": 2092.0703863384133, - "top": 378.8244263325762 + "left": 1991.8492322053908, + "top": 2212.3456427728447 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2147,7 +2147,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats s1 path" + "newname": "purge_dups Path p2" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2160,16 +2160,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/p2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "d8714313-14f5-4bfa-9916-13ba9f6cc153", + "uuid": "39aef1c3-d009-4058-a521-5c68e0bd4a97", "when": null, "workflow_outputs": [ { - "label": "gfastats s1 path", + "label": "purge_dups Path p2", "output_name": "out1", - "uuid": "3f789e73-69d4-4d1b-9f8b-986057199d0f" + "uuid": "c2f04aec-0bd9-4413-8a0e-5a92ac84a9bc" } ] }, @@ -2180,20 +2180,16 @@ "id": 17, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, "components_2|param_type|component_value": { "id": 1, "output_name": "output" - }, - "components_4|param_type|component_value": { - "id": 3, - "output_name": "output" } }, "inputs": [], - "label": "Pretext s1", + "label": "Meryl", "name": "Compose text parameter value", "outputs": [ { @@ -2202,8 +2198,8 @@ } ], "position": { - "left": 1893.8411346476478, - "top": 1007.2273184880099 + "left": 1682.782110918637, + "top": 2734.84891509482 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2213,7 +2209,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Pretext s1 path" + "newname": "Meryl Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2226,16 +2222,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"pretext/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"meryl/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "9b865ce1-fc13-4fc0-a7ca-c34b32f5268e", + "uuid": "71f6e0d0-50ab-4584-8770-d166514f82a9", "when": null, "workflow_outputs": [ { - "label": "Pretext s1 path", + "label": "Meryl Path", "output_name": "out1", - "uuid": "36a3f1e9-402e-48cd-b70f-80901b5f3ff0" + "uuid": "272b4efc-7a5c-480c-9ec6-660d9a8b89f2" } ] }, @@ -2255,7 +2251,7 @@ } }, "inputs": [], - "label": "Busco s1", + "label": "Busco s2", "name": "Compose text parameter value", "outputs": [ { @@ -2264,8 +2260,8 @@ } ], "position": { - "left": 2304.3967549834692, - "top": 66.89734261967101 + "left": 2053.2855507507265, + "top": 77.99109148095539 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2275,7 +2271,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Busco s1 Path" + "newname": "Busco s2 Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2291,13 +2287,13 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "63b266bd-78b7-4154-9e3d-94423dc670b2", + "uuid": "f59862eb-8002-49fd-88fd-e7659f72341f", "when": null, "workflow_outputs": [ { - "label": "Busco s1 Path", + "label": "Busco s2 Path", "output_name": "out1", - "uuid": "edd1d288-7361-4f2e-9702-b4a548d7c4b1" + "uuid": "2545849e-3a9f-4b93-acfd-9bbda9b11002" } ] }, @@ -2321,7 +2317,7 @@ } }, "inputs": [], - "label": "Pretext s2", + "label": "Pretext s1", "name": "Compose text parameter value", "outputs": [ { @@ -2330,8 +2326,8 @@ } ], "position": { - "left": 2137.087731254458, - "top": 1010.300119764829 + "left": 1913.9057330959258, + "top": 901.6138446229584 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2341,7 +2337,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Pretext s2 path" + "newname": "Pretext s1 path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2357,13 +2353,13 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"pretext/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "960f659c-abbf-4310-af81-316ebf3d72a2", + "uuid": "4bacfba9-3559-4746-a1ea-44f301e1c33c", "when": null, "workflow_outputs": [ { - "label": "Pretext s2 path", + "label": "Pretext s1 path", "output_name": "out1", - "uuid": "18fe7a6c-b603-448f-8448-e5c422aeb6b7" + "uuid": "36a3f1e9-402e-48cd-b70f-80901b5f3ff0" } ] }, @@ -2383,7 +2379,7 @@ } }, "inputs": [], - "label": "gfastats s2", + "label": "gfastats s1", "name": "Compose text parameter value", "outputs": [ { @@ -2392,8 +2388,8 @@ } ], "position": { - "left": 2341.810030403245, - "top": 380.612619764829 + "left": 2092.0703863384133, + "top": 378.82442633257625 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2403,7 +2399,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats s2 path" + "newname": "gfastats s1 path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2416,16 +2412,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "a33409a7-f413-4804-a365-bae779c7ef0f", + "uuid": "d070792a-4add-4ad1-94a3-8dfc2c7bad5c", "when": null, "workflow_outputs": [ { - "label": "gfastats s2 path", + "label": "gfastats s1 path", "output_name": "out1", - "uuid": "a2a42ac1-ecbc-4371-986c-400faa618d46" + "uuid": "3f789e73-69d4-4d1b-9f8b-986057199d0f" } ] }, @@ -2445,7 +2441,7 @@ } }, "inputs": [], - "label": "Busco p1", + "label": "Busco s1", "name": "Compose text parameter value", "outputs": [ { @@ -2454,8 +2450,8 @@ } ], "position": { - "left": 2579.4140634606147, - "top": 70.59525890676582 + "left": 2304.396754983469, + "top": 66.89734261967101 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2465,7 +2461,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Busco p1 Path" + "newname": "Busco s1 Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2481,13 +2477,13 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "2c5eef41-840a-4c44-8d26-b9f31eac6dfa", + "uuid": "a91c179c-9447-44ea-aaa1-66bcbcd27546", "when": null, "workflow_outputs": [ { - "label": "Busco p1 Path", + "label": "Busco s1 Path", "output_name": "out1", - "uuid": "941dea07-456e-4f6e-b7ec-5aa1231de628" + "uuid": "edd1d288-7361-4f2e-9702-b4a548d7c4b1" } ] }, @@ -2504,10 +2500,14 @@ "components_2|param_type|component_value": { "id": 1, "output_name": "output" + }, + "components_4|param_type|component_value": { + "id": 3, + "output_name": "output" } }, "inputs": [], - "label": "gfastats p1", + "label": "Pretext s2", "name": "Compose text parameter value", "outputs": [ { @@ -2516,14 +2516,21 @@ } ], "position": { - "left": 2616.8792643118272, - "top": 376.4980303583458 + "left": 2137.087731254458, + "top": 1010.3001197648289 }, "post_job_actions": { "HideDatasetActionout1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out1" + }, + "RenameDatasetActionout1": { + "action_arguments": { + "newname": "Pretext s2 path" + }, + "action_type": "RenameDatasetAction", + "output_name": "out1" } }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1", @@ -2533,16 +2540,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"pretext/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "8a853c96-bccc-4ded-9bca-7a66f2b9fb97", + "uuid": "2f7eecdd-06b1-4e47-946e-0602d23a0cad", "when": null, "workflow_outputs": [ { - "label": "gfastats p1 path", + "label": "Pretext s2 path", "output_name": "out1", - "uuid": "18c35444-cd38-4b03-9fae-c4c9fff1050c" + "uuid": "18fe7a6c-b603-448f-8448-e5c422aeb6b7" } ] }, @@ -2562,7 +2569,7 @@ } }, "inputs": [], - "label": "Busco p2", + "label": "gfastats s2", "name": "Compose text parameter value", "outputs": [ { @@ -2571,8 +2578,8 @@ } ], "position": { - "left": 2865.9593643001667, - "top": 77.97373176160781 + "left": 2341.810030403245, + "top": 380.61261976482893 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2582,7 +2589,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Busco p2 Path" + "newname": "gfastats s2 path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2595,16 +2602,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "e1fc82f5-5145-4865-882a-f16da5ae03b3", + "uuid": "81e6da42-8991-43ac-9a40-80d1a7f1f06f", "when": null, "workflow_outputs": [ { - "label": "Busco p2 Path", + "label": "gfastats s2 path", "output_name": "out1", - "uuid": "39e8994e-6ad0-45d1-a130-f2edcc55b213" + "uuid": "a2a42ac1-ecbc-4371-986c-400faa618d46" } ] }, @@ -2624,7 +2631,7 @@ } }, "inputs": [], - "label": "gfastats p2", + "label": "Busco p1", "name": "Compose text parameter value", "outputs": [ { @@ -2633,8 +2640,8 @@ } ], "position": { - "left": 2866.1328134606147, - "top": 391.6195814165314 + "left": 2579.4140634606147, + "top": 70.59525890676582 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2644,7 +2651,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats p2 path" + "newname": "Busco p1 Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2657,16 +2664,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "0bdf6e69-f713-4630-902c-7731475b18d9", + "uuid": "3416a436-6824-422e-a163-8c77c3a8da2f", "when": null, "workflow_outputs": [ { - "label": "gfastats p2 path", + "label": "Busco p1 Path", "output_name": "out1", - "uuid": "25c99a74-4079-45a5-809b-ad7657afda9b" + "uuid": "941dea07-456e-4f6e-b7ec-5aa1231de628" } ] }, @@ -2681,16 +2688,12 @@ "output_name": "out1" }, "components_2|param_type|component_value": { - "id": 3, - "output_name": "output" - }, - "components_4|param_type|component_value": { "id": 1, "output_name": "output" } }, "inputs": [], - "label": "Busco Purged Hap", + "label": "gfastats p1", "name": "Compose text parameter value", "outputs": [ { @@ -2699,21 +2702,14 @@ } ], "position": { - "left": 3212.92256007387, - "top": 0 + "left": 2616.879264311827, + "top": 376.4980303583457 }, "post_job_actions": { "HideDatasetActionout1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out1" - }, - "RenameDatasetActionout1": { - "action_arguments": { - "newname": "Busco purged hap Path" - }, - "action_type": "RenameDatasetAction", - "output_name": "out1" } }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1", @@ -2723,16 +2719,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "3ae46b41-80a4-4249-addb-24960c9308ab", + "uuid": "5ded3c40-e2d8-4c9e-9009-2edff40a3509", "when": null, "workflow_outputs": [ { - "label": "Busco purged hap Path", + "label": "gfastats p1 path", "output_name": "out1", - "uuid": "836dbc1d-d19d-4c3c-bdac-e4c102061c0c" + "uuid": "18c35444-cd38-4b03-9fae-c4c9fff1050c" } ] }, @@ -2747,16 +2743,12 @@ "output_name": "out1" }, "components_2|param_type|component_value": { - "id": 3, - "output_name": "output" - }, - "components_4|param_type|component_value": { "id": 1, "output_name": "output" } }, "inputs": [], - "label": "gfastats purged hap", + "label": "Busco p2", "name": "Compose text parameter value", "outputs": [ { @@ -2765,8 +2757,8 @@ } ], "position": { - "left": 3239.7645671561722, - "top": 407.9932227245923 + "left": 2865.9593643001663, + "top": 77.97373176160778 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2776,7 +2768,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats purged hap Path" + "newname": "Busco p2 Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2789,16 +2781,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "4b815729-433e-4be0-8bd9-e342dd64be24", + "uuid": "f301543b-86a6-465b-ac2a-e723d0065acb", "when": null, "workflow_outputs": [ { - "label": "gfastats purged hap Path", + "label": "Busco p2 Path", "output_name": "out1", - "uuid": "cc25b12e-e9c0-4b81-820f-9ac535819451" + "uuid": "39e8994e-6ad0-45d1-a130-f2edcc55b213" } ] }, @@ -2809,7 +2801,7 @@ "id": 27, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 7, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -2818,7 +2810,7 @@ } }, "inputs": [], - "label": "Bionano", + "label": "gfastats p2", "name": "Compose text parameter value", "outputs": [ { @@ -2827,8 +2819,8 @@ } ], "position": { - "left": 1657.9036346476478, - "top": 1700.6473642552671 + "left": 2866.1328134606147, + "top": 391.6195814165314 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2838,7 +2830,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Bionano Path" + "newname": "gfastats p2 path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2851,16 +2843,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"bionano/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "39840a9f-bd21-478d-9ed9-e5dc905e9e0e", + "uuid": "89828636-8c72-4263-a83f-64c51bce5859", "when": null, "workflow_outputs": [ { - "label": "Bionano Path", + "label": "gfastats p2 path", "output_name": "out1", - "uuid": "8f495388-20b4-4017-9e49-e159ca40b6c9" + "uuid": "25c99a74-4079-45a5-809b-ad7657afda9b" } ] }, @@ -2871,16 +2863,20 @@ "id": 28, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 7, "output_name": "out1" }, "components_2|param_type|component_value": { + "id": 3, + "output_name": "output" + }, + "components_4|param_type|component_value": { "id": 1, "output_name": "output" } }, "inputs": [], - "label": "HIfiasm", + "label": "Busco Purged Hap", "name": "Compose text parameter value", "outputs": [ { @@ -2889,8 +2885,8 @@ } ], "position": { - "left": 1675.993908376659, - "top": 1943.9112693392224 + "left": 3212.92256007387, + "top": 0.0 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2900,7 +2896,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "HIfiasm Path" + "newname": "Busco purged hap Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2913,16 +2909,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"hIfiasm/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "aa52fcc6-fe52-41fc-9e38-525b0c564989", + "uuid": "072c272b-182b-4aca-bdc1-47265a1aeebe", "when": null, "workflow_outputs": [ { - "label": "HIfiasm Path", + "label": "Busco purged hap Path", "output_name": "out1", - "uuid": "ab6b40b7-c5e9-401d-b691-d12d86692ea4" + "uuid": "836dbc1d-d19d-4c3c-bdac-e4c102061c0c" } ] }, @@ -2933,16 +2929,20 @@ "id": 29, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 7, "output_name": "out1" }, "components_2|param_type|component_value": { + "id": 3, + "output_name": "output" + }, + "components_4|param_type|component_value": { "id": 1, "output_name": "output" } }, "inputs": [], - "label": "purge_dups p1", + "label": "gfastats purged hap", "name": "Compose text parameter value", "outputs": [ { @@ -2951,8 +2951,8 @@ } ], "position": { - "left": 1682.0696884174565, - "top": 2221.28145457317 + "left": 3239.7645671561722, + "top": 407.9932227245923 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2962,7 +2962,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "purge_dups Path p1" + "newname": "gfastats purged hap Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2975,16 +2975,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/p1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "d7d9344e-f9b6-4337-a47b-c1ad5cac58bf", + "uuid": "0119e141-76cb-4d39-bd35-0cd059bcd554", "when": null, "workflow_outputs": [ { - "label": "purge_dups Path p1", + "label": "gfastats purged hap Path", "output_name": "out1", - "uuid": "ee7b6407-c087-4eed-a0d8-6019240ffcf2" + "uuid": "cc25b12e-e9c0-4b81-820f-9ac535819451" } ] }, @@ -2995,7 +2995,7 @@ "id": 30, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 13, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -3004,7 +3004,7 @@ } }, "inputs": [], - "label": "Salsa", + "label": "Bionano", "name": "Compose text parameter value", "outputs": [ { @@ -3013,8 +3013,8 @@ } ], "position": { - "left": 1685.5948295520323, - "top": 2496.56766509482 + "left": 1689.3858121269677, + "top": 1654.5706887786594 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3024,7 +3024,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Salsa Path" + "newname": "Bionano Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3037,16 +3037,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"salsa/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"bionano/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "eab68aa2-01eb-45bc-87a4-9c7e8e7e6577", + "uuid": "8450bf85-940b-4c35-b103-5ed0ecf16b94", "when": null, "workflow_outputs": [ { - "label": "Salsa Path", + "label": "Bionano Path", "output_name": "out1", - "uuid": "11deb798-17f2-4dce-a4d8-cd878961debf" + "uuid": "8f495388-20b4-4017-9e49-e159ca40b6c9" } ] }, @@ -3057,7 +3057,7 @@ "id": 31, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 13, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -3066,7 +3066,7 @@ } }, "inputs": [], - "label": "purge_dups p2", + "label": "Yahs", "name": "Compose text parameter value", "outputs": [ { @@ -3075,8 +3075,8 @@ } ], "position": { - "left": 2035.5249226421374, - "top": 2240.998127990509 + "left": 1685.594829552032, + "top": 2496.56766509482 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3086,7 +3086,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "purge_dups Path p2" + "newname": "Yahs Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3099,16 +3099,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/p2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"yahs/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "2bca5b05-21ad-4335-9fd8-b8f4162685e0", + "uuid": "ba39aae5-29c9-48c2-bc8f-1a475baaf61a", "when": null, "workflow_outputs": [ { - "label": "purge_dups Path p2", + "label": "Yahs Path", "output_name": "out1", - "uuid": "c2f04aec-0bd9-4413-8a0e-5a92ac84a9bc" + "uuid": "15fc237e-52e2-4b5e-ab70-c78dc796323e" } ] }, @@ -3119,7 +3119,7 @@ "id": 32, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 13, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -3141,8 +3141,8 @@ } ], "position": { - "left": 2032.121191451342, - "top": 2552.5327778776164 + "left": 1985.6110781180814, + "top": 2505.1114842682364 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3168,7 +3168,7 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "6e87aae8-216f-424f-a2b1-9897b7162899", + "uuid": "8e762ef1-0bd7-4d13-856c-5702858ecb5d", "when": null, "workflow_outputs": [ { @@ -3180,7 +3180,7 @@ } }, "tags": "", - "uuid": "5d14fa10-3c76-4b6e-8144-5d6efcafbdcc" + "uuid": "f8bcce60-4e30-4936-97f5-f89cf8059c5a" }, "tool_id": null, "type": "subworkflow", @@ -4238,6 +4238,6 @@ } }, "tags": [], - "uuid": "ae5d2369-7d8f-4798-8830-fe741841bdba", - "version": 6 + "uuid": "d0f1678d-6617-455e-a4e4-f993741bb507", + "version": 4 } \ No newline at end of file diff --git a/workflows/VGP-assembly-v2/Export-WF7/Galaxy-Workflow-Export_WF7_Scaffolding_Bionano.ga b/workflows/VGP-assembly-v2/Export-WF7/Galaxy-Workflow-Export_WF7_Scaffolding_Bionano.ga index 9a01d67d5..3d4fe083b 100644 --- a/workflows/VGP-assembly-v2/Export-WF7/Galaxy-Workflow-Export_WF7_Scaffolding_Bionano.ga +++ b/workflows/VGP-assembly-v2/Export-WF7/Galaxy-Workflow-Export_WF7_Scaffolding_Bionano.ga @@ -970,14 +970,14 @@ "name": "Input parameter", "outputs": [], "position": { - "left": 0, + "left": 0.0, "top": 1412.1079716128102 }, "tool_id": null, "tool_state": "{\"parameter_type\": \"text\", \"optional\": false}", "tool_version": null, "type": "parameter_input", - "uuid": "c38f6049-408f-40e3-9737-7a8c873d7da1", + "uuid": "5af2d287-537a-4df9-bf39-7446c7caada4", "when": null, "workflow_outputs": [] }, @@ -997,14 +997,14 @@ "name": "Input parameter", "outputs": [], "position": { - "left": 3.0251037183103424, + "left": 3.02510371831022, "top": 1524.9876379842785 }, "tool_id": null, "tool_state": "{\"parameter_type\": \"text\", \"optional\": false}", "tool_version": null, "type": "parameter_input", - "uuid": "df2514d2-74f2-4579-a18d-64de22d480ba", + "uuid": "6eb50044-58a7-4ccf-a32f-259b3bcf003d", "when": null, "workflow_outputs": [] }, @@ -1024,14 +1024,14 @@ "name": "Input parameter", "outputs": [], "position": { - "left": 5.5771931247935616, + "left": 5.577193124793666, "top": 1605.2654481521888 }, "tool_id": null, "tool_state": "{\"parameter_type\": \"text\", \"optional\": false}", "tool_version": null, "type": "parameter_input", - "uuid": "7679e681-5422-4cad-a0e0-3554db0551b4", + "uuid": "4aaba272-01a9-4529-85d1-2558b9ce57b3", "when": null, "workflow_outputs": [] }, @@ -1051,14 +1051,14 @@ "name": "Input parameter", "outputs": [], "position": { - "left": 3.910500647239937, + "left": 3.910500647240042, "top": 1708.7029117132897 }, "tool_id": null, "tool_state": "{\"parameter_type\": \"text\", \"optional\": false}", "tool_version": null, "type": "parameter_input", - "uuid": "04c39f38-970e-451b-a650-3bb630d8d4f8", + "uuid": "3999e77b-3a4c-4eed-8caf-a82d5da2f8ce", "when": null, "workflow_outputs": [] }, @@ -1091,7 +1091,7 @@ } ], "position": { - "left": 517.0355871896256, + "left": 517.0355871896259, "top": 1166.2550557781217 }, "post_job_actions": { @@ -1113,7 +1113,7 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"species/\"}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/assembly_vgp_\"}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 6, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_2.0/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "b86485d7-063e-4c28-ba5d-cfd34922cf28", + "uuid": "c84adde2-6bfa-48a2-8a0b-56f38f9cb58e", "when": null, "workflow_outputs": [ { @@ -1144,8 +1144,8 @@ } ], "position": { - "left": 888.8403252145398, - "top": 1244.1872541863545 + "left": 901.6183860897531, + "top": 1245.8135776000238 }, "post_job_actions": { "HideDatasetActionout1": { @@ -1164,7 +1164,7 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"evaluation/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "6582a456-fdb0-4e1d-a717-858d0ff20d27", + "uuid": "b63be875-9960-4a9a-9751-7e6e3b4c17c2", "when": null, "workflow_outputs": [ { @@ -1195,7 +1195,7 @@ } ], "position": { - "left": 890.2647477831423, + "left": 890.2647477831424, "top": 1548.1994901006497 }, "post_job_actions": { @@ -1222,7 +1222,7 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"intermediates/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "d7ab3988-5f01-499d-8290-274fef8c5dec", + "uuid": "6a76456a-1816-455a-b46c-22ad41d05701", "when": null, "workflow_outputs": [ { @@ -1257,8 +1257,8 @@ } ], "position": { - "left": 1271.5669465063231, - "top": 1060.7515977265828 + "left": 1263.6733559531035, + "top": 1049.7775118609336 }, "post_job_actions": { "HideDatasetActionout1": { @@ -1277,7 +1277,7 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "57658471-57f2-4eae-8f84-c9f1f4357560", + "uuid": "c7a4c1ff-cbad-4a88-a804-c2da9616fbce", "when": null, "workflow_outputs": [ { @@ -1300,14 +1300,10 @@ "components_2|param_type|component_value": { "id": 1, "output_name": "output" - }, - "components_4|param_type|component_value": { - "id": 3, - "output_name": "output" } }, "inputs": [], - "label": "Genomescope", + "label": "Busco c", "name": "Compose text parameter value", "outputs": [ { @@ -1316,21 +1312,14 @@ } ], "position": { - "left": 2071.028743964346, - "top": 1316.584827816368 + "left": 1825.52512193776, + "top": 59.95290260356501 }, "post_job_actions": { "HideDatasetActionout1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out1" - }, - "RenameDatasetActionout1": { - "action_arguments": { - "newname": "Genomescope path" - }, - "action_type": "RenameDatasetAction", - "output_name": "out1" } }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1", @@ -1340,16 +1329,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"genomescope/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_genomescope_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/c/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "f0974de0-9a40-4e2a-afc8-268bb3a21dd1", + "uuid": "acfaf7f8-2ffc-4b21-af49-7b16c95236a5", "when": null, "workflow_outputs": [ { - "label": "Genomescope path", + "label": "Busco c path", "output_name": "out1", - "uuid": "ea782ff8-9dcf-428c-8661-0f0f00f3231f" + "uuid": "ecf1ee1e-5613-44b4-992f-ed37ecf48548" } ] }, @@ -1364,12 +1353,12 @@ "output_name": "out1" }, "components_2|param_type|component_value": { - "id": 2, + "id": 1, "output_name": "output" } }, "inputs": [], - "label": "Merqury", + "label": "gfastats c ", "name": "Compose text parameter value", "outputs": [ { @@ -1378,8 +1367,8 @@ } ], "position": { - "left": 2408.667576170503, - "top": 1325.4738239975713 + "left": 1828.2518626642654, + "top": 392.10255910317727 }, "post_job_actions": { "HideDatasetActionout1": { @@ -1389,7 +1378,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Merqury c path" + "newname": "gfastats c path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -1402,16 +1391,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"merqury/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/c/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "8541357f-1955-4078-b4a6-caf441401b66", + "uuid": "84e3e25c-34a0-4e8b-82d9-2ad2a227fc5a", "when": null, "workflow_outputs": [ { - "label": "Merqury c path", + "label": "gfastats c path", "output_name": "out1", - "uuid": "080250d0-9459-42f6-bc7b-c7e4534cfdbc" + "uuid": "ff081fcb-2fe0-43d7-87d3-15ae5360cd45" } ] }, @@ -1428,10 +1417,14 @@ "components_2|param_type|component_value": { "id": 1, "output_name": "output" + }, + "components_4|param_type|component_value": { + "id": 3, + "output_name": "output" } }, "inputs": [], - "label": null, + "label": "Genomescope", "name": "Compose text parameter value", "outputs": [ { @@ -1440,8 +1433,8 @@ } ], "position": { - "left": 2676.2542643118272, - "top": 1327.8001744231776 + "left": 2009.9695164575119, + "top": 1334.8267703356214 }, "post_job_actions": { "HideDatasetActionout1": { @@ -1451,7 +1444,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Merqury p path" + "newname": "Genomescope path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -1464,16 +1457,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"merqury/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"genomescope/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_genomescope_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "1b2abf5e-d56e-499a-83da-d503a34f981c", + "uuid": "9e38bdaa-cbe5-4240-bc39-c5910ec38e4b", "when": null, "workflow_outputs": [ { - "label": "Merqury p path", + "label": "Genomescope path", "output_name": "out1", - "uuid": "2de757c6-b4ee-44a5-ae36-46b97d7713d8" + "uuid": "ea782ff8-9dcf-428c-8661-0f0f00f3231f" } ] }, @@ -1484,16 +1477,16 @@ "id": 11, "input_connections": { "components_0|param_type|component_value": { - "id": 6, + "id": 5, "output_name": "out1" }, - "components_1|param_type|component_value": { - "id": 3, + "components_2|param_type|component_value": { + "id": 2, "output_name": "output" } }, "inputs": [], - "label": "Intermediate haplotype", + "label": "Merqury", "name": "Compose text parameter value", "outputs": [ { @@ -1502,8 +1495,8 @@ } ], "position": { - "left": 1244.8133244797375, - "top": 1748.2516888238306 + "left": 2305.0307369613033, + "top": 1371.303115252299 }, "post_job_actions": { "HideDatasetActionout1": { @@ -1513,7 +1506,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Intermediate haplotype path" + "newname": "Merqury c path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -1526,16 +1519,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"merqury/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "d96ad636-0a3d-4151-8b35-bfeea8272ecc", + "uuid": "63bc8f4b-6811-4304-991c-7d82e4081f6a", "when": null, "workflow_outputs": [ { - "label": "Intermediate haplotype path", + "label": "Merqury c path", "output_name": "out1", - "uuid": "863497a1-3a47-4549-bb55-bffad3883a39" + "uuid": "080250d0-9459-42f6-bc7b-c7e4534cfdbc" } ] }, @@ -1546,7 +1539,7 @@ "id": 12, "input_connections": { "components_0|param_type|component_value": { - "id": 6, + "id": 5, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -1555,7 +1548,7 @@ } }, "inputs": [], - "label": "Meryl", + "label": null, "name": "Compose text parameter value", "outputs": [ { @@ -1564,8 +1557,8 @@ } ], "position": { - "left": 1682.7821109186366, - "top": 2734.84891509482 + "left": 2540.368844799535, + "top": 1498.359788467742 }, "post_job_actions": { "HideDatasetActionout1": { @@ -1575,7 +1568,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Meryl Path" + "newname": "Merqury p path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -1588,16 +1581,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"meryl/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"merqury/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "998fae4c-35aa-4369-8c1b-960614467da3", + "uuid": "2a7e29a5-782e-4cff-bde5-3c6e538ac617", "when": null, "workflow_outputs": [ { - "label": "Meryl Path", + "label": "Merqury p path", "output_name": "out1", - "uuid": "272b4efc-7a5c-480c-9ec6-660d9a8b89f2" + "uuid": "2de757c6-b4ee-44a5-ae36-46b97d7713d8" } ] }, @@ -1608,16 +1601,16 @@ "id": 13, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, - "components_2|param_type|component_value": { - "id": 1, + "components_1|param_type|component_value": { + "id": 3, "output_name": "output" } }, "inputs": [], - "label": "Busco c", + "label": "Intermediate haplotype", "name": "Compose text parameter value", "outputs": [ { @@ -1626,14 +1619,21 @@ } ], "position": { - "left": 1825.5251219377596, - "top": 59.95290260356503 + "left": 1244.8133244797377, + "top": 1748.2516888238306 }, "post_job_actions": { "HideDatasetActionout1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out1" + }, + "RenameDatasetActionout1": { + "action_arguments": { + "newname": "Intermediate haplotype path" + }, + "action_type": "RenameDatasetAction", + "output_name": "out1" } }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1", @@ -1643,16 +1643,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/c/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "ee07c83e-5711-4f4f-81ec-9e0c2105d6f7", + "uuid": "d30394bb-64da-49ea-9b82-7a482af4b19f", "when": null, "workflow_outputs": [ { - "label": "Busco c path", + "label": "Intermediate haplotype path", "output_name": "out1", - "uuid": "ecf1ee1e-5613-44b4-992f-ed37ecf48548" + "uuid": "863497a1-3a47-4549-bb55-bffad3883a39" } ] }, @@ -1663,7 +1663,7 @@ "id": 14, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -1672,7 +1672,7 @@ } }, "inputs": [], - "label": "gfastats c ", + "label": "HIfiasm", "name": "Compose text parameter value", "outputs": [ { @@ -1681,8 +1681,8 @@ } ], "position": { - "left": 1847.105149048301, - "top": 376.5848460358178 + "left": 1670.4414723317645, + "top": 1968.0696604856598 }, "post_job_actions": { "HideDatasetActionout1": { @@ -1692,7 +1692,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats c path" + "newname": "HIfiasm Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -1705,16 +1705,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/c/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"hifiasm/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "7ff27452-4035-4210-848c-12a861351e01", + "uuid": "38d4af20-6972-453e-ad44-766960ff21ac", "when": null, "workflow_outputs": [ { - "label": "gfastats c path", + "label": "HIfiasm Path", "output_name": "out1", - "uuid": "ff081fcb-2fe0-43d7-87d3-15ae5360cd45" + "uuid": "ab6b40b7-c5e9-401d-b691-d12d86692ea4" } ] }, @@ -1725,7 +1725,7 @@ "id": 15, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -1734,7 +1734,7 @@ } }, "inputs": [], - "label": "Busco s2", + "label": "purge_dups p1", "name": "Compose text parameter value", "outputs": [ { @@ -1743,8 +1743,8 @@ } ], "position": { - "left": 2053.2855507507265, - "top": 77.99109148095542 + "left": 1686.4395901180555, + "top": 2214.7096632841826 }, "post_job_actions": { "HideDatasetActionout1": { @@ -1754,7 +1754,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Busco s2 Path" + "newname": "purge_dups Path p1" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -1767,16 +1767,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/p1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "b717aa49-1586-47a7-bae4-1acafdd708d9", + "uuid": "47c0d51b-323b-4ee2-95d8-b0f26c27ad00", "when": null, "workflow_outputs": [ { - "label": "Busco s2 Path", + "label": "purge_dups Path p1", "output_name": "out1", - "uuid": "2545849e-3a9f-4b93-acfd-9bbda9b11002" + "uuid": "ee7b6407-c087-4eed-a0d8-6019240ffcf2" } ] }, @@ -1787,7 +1787,7 @@ "id": 16, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -1796,7 +1796,7 @@ } }, "inputs": [], - "label": "gfastats s1", + "label": "purge_dups p2", "name": "Compose text parameter value", "outputs": [ { @@ -1805,8 +1805,8 @@ } ], "position": { - "left": 2092.0703863384133, - "top": 378.8244263325762 + "left": 1991.8492322053903, + "top": 2212.3456427728447 }, "post_job_actions": { "HideDatasetActionout1": { @@ -1816,7 +1816,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats s1 path" + "newname": "purge_dups Path p2" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -1829,16 +1829,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/p2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "d8714313-14f5-4bfa-9916-13ba9f6cc153", + "uuid": "1c47a1b7-227d-4356-ae61-066762120ec4", "when": null, "workflow_outputs": [ { - "label": "gfastats s1 path", + "label": "purge_dups Path p2", "output_name": "out1", - "uuid": "3f789e73-69d4-4d1b-9f8b-986057199d0f" + "uuid": "c2f04aec-0bd9-4413-8a0e-5a92ac84a9bc" } ] }, @@ -1849,20 +1849,16 @@ "id": 17, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, "components_2|param_type|component_value": { "id": 1, "output_name": "output" - }, - "components_4|param_type|component_value": { - "id": 3, - "output_name": "output" } }, "inputs": [], - "label": "Pretext s1", + "label": "Meryl", "name": "Compose text parameter value", "outputs": [ { @@ -1871,8 +1867,8 @@ } ], "position": { - "left": 1893.8411346476478, - "top": 1007.2273184880099 + "left": 1682.7821109186366, + "top": 2734.84891509482 }, "post_job_actions": { "HideDatasetActionout1": { @@ -1882,7 +1878,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Pretext s1 path" + "newname": "Meryl Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -1895,16 +1891,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"pretext/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"meryl/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "9b865ce1-fc13-4fc0-a7ca-c34b32f5268e", + "uuid": "49eac6d5-021d-40b0-a328-328fada5bcc8", "when": null, "workflow_outputs": [ { - "label": "Pretext s1 path", + "label": "Meryl Path", "output_name": "out1", - "uuid": "36a3f1e9-402e-48cd-b70f-80901b5f3ff0" + "uuid": "272b4efc-7a5c-480c-9ec6-660d9a8b89f2" } ] }, @@ -1924,7 +1920,7 @@ } }, "inputs": [], - "label": "Busco s1", + "label": "Busco s2", "name": "Compose text parameter value", "outputs": [ { @@ -1933,8 +1929,8 @@ } ], "position": { - "left": 2304.3967549834692, - "top": 66.89734261967101 + "left": 2053.285550750726, + "top": 77.99109148095539 }, "post_job_actions": { "HideDatasetActionout1": { @@ -1944,7 +1940,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Busco s1 Path" + "newname": "Busco s2 Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -1960,13 +1956,13 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "63b266bd-78b7-4154-9e3d-94423dc670b2", + "uuid": "906a5135-5757-494a-b031-0ed6df8b8489", "when": null, "workflow_outputs": [ { - "label": "Busco s1 Path", + "label": "Busco s2 Path", "output_name": "out1", - "uuid": "edd1d288-7361-4f2e-9702-b4a548d7c4b1" + "uuid": "2545849e-3a9f-4b93-acfd-9bbda9b11002" } ] }, @@ -1990,7 +1986,7 @@ } }, "inputs": [], - "label": "Pretext s2", + "label": "Pretext s1", "name": "Compose text parameter value", "outputs": [ { @@ -1999,8 +1995,8 @@ } ], "position": { - "left": 2137.087731254458, - "top": 1010.300119764829 + "left": 1913.9057330959263, + "top": 901.6138446229586 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2010,7 +2006,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Pretext s2 path" + "newname": "Pretext s1 path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2026,13 +2022,13 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"pretext/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "960f659c-abbf-4310-af81-316ebf3d72a2", + "uuid": "03ac7835-8df0-4021-9b9f-f5f46fe74ceb", "when": null, "workflow_outputs": [ { - "label": "Pretext s2 path", + "label": "Pretext s1 path", "output_name": "out1", - "uuid": "18fe7a6c-b603-448f-8448-e5c422aeb6b7" + "uuid": "36a3f1e9-402e-48cd-b70f-80901b5f3ff0" } ] }, @@ -2052,7 +2048,7 @@ } }, "inputs": [], - "label": "gfastats s2", + "label": "gfastats s1", "name": "Compose text parameter value", "outputs": [ { @@ -2061,8 +2057,8 @@ } ], "position": { - "left": 2341.810030403245, - "top": 380.612619764829 + "left": 2092.070386338413, + "top": 378.82442633257614 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2072,7 +2068,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats s2 path" + "newname": "gfastats s1 path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2085,16 +2081,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "a33409a7-f413-4804-a365-bae779c7ef0f", + "uuid": "fd4db7a8-0d89-4e18-ae2c-23d0d4406a38", "when": null, "workflow_outputs": [ { - "label": "gfastats s2 path", + "label": "gfastats s1 path", "output_name": "out1", - "uuid": "a2a42ac1-ecbc-4371-986c-400faa618d46" + "uuid": "3f789e73-69d4-4d1b-9f8b-986057199d0f" } ] }, @@ -2114,7 +2110,7 @@ } }, "inputs": [], - "label": "Busco p1", + "label": "Busco s1", "name": "Compose text parameter value", "outputs": [ { @@ -2123,8 +2119,8 @@ } ], "position": { - "left": 2579.4140634606147, - "top": 70.59525890676582 + "left": 2304.3967549834692, + "top": 66.89734261967101 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2134,7 +2130,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Busco p1 Path" + "newname": "Busco s1 Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2150,13 +2146,13 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "2c5eef41-840a-4c44-8d26-b9f31eac6dfa", + "uuid": "60fb9b28-f060-4ecb-b0ea-b5f0f684003e", "when": null, "workflow_outputs": [ { - "label": "Busco p1 Path", + "label": "Busco s1 Path", "output_name": "out1", - "uuid": "941dea07-456e-4f6e-b7ec-5aa1231de628" + "uuid": "edd1d288-7361-4f2e-9702-b4a548d7c4b1" } ] }, @@ -2173,10 +2169,14 @@ "components_2|param_type|component_value": { "id": 1, "output_name": "output" + }, + "components_4|param_type|component_value": { + "id": 3, + "output_name": "output" } }, "inputs": [], - "label": "gfastats p1", + "label": "Pretext s2", "name": "Compose text parameter value", "outputs": [ { @@ -2185,14 +2185,21 @@ } ], "position": { - "left": 2616.8792643118272, - "top": 376.4980303583458 + "left": 2137.0877312544576, + "top": 1010.3001197648291 }, "post_job_actions": { "HideDatasetActionout1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out1" + }, + "RenameDatasetActionout1": { + "action_arguments": { + "newname": "Pretext s2 path" + }, + "action_type": "RenameDatasetAction", + "output_name": "out1" } }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1", @@ -2202,16 +2209,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"pretext/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "8a853c96-bccc-4ded-9bca-7a66f2b9fb97", + "uuid": "4d85598d-951a-47c8-a73f-5d2aa8489690", "when": null, "workflow_outputs": [ { - "label": "gfastats p1 path", + "label": "Pretext s2 path", "output_name": "out1", - "uuid": "18c35444-cd38-4b03-9fae-c4c9fff1050c" + "uuid": "18fe7a6c-b603-448f-8448-e5c422aeb6b7" } ] }, @@ -2231,7 +2238,7 @@ } }, "inputs": [], - "label": "Busco p2", + "label": "gfastats s2", "name": "Compose text parameter value", "outputs": [ { @@ -2240,8 +2247,8 @@ } ], "position": { - "left": 2865.9593643001667, - "top": 77.97373176160781 + "left": 2341.8100304032446, + "top": 380.61261976482905 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2251,7 +2258,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Busco p2 Path" + "newname": "gfastats s2 path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2264,16 +2271,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "e1fc82f5-5145-4865-882a-f16da5ae03b3", + "uuid": "1219f5a8-6770-4503-85ce-e1f932155077", "when": null, "workflow_outputs": [ { - "label": "Busco p2 Path", + "label": "gfastats s2 path", "output_name": "out1", - "uuid": "39e8994e-6ad0-45d1-a130-f2edcc55b213" + "uuid": "a2a42ac1-ecbc-4371-986c-400faa618d46" } ] }, @@ -2293,7 +2300,7 @@ } }, "inputs": [], - "label": "gfastats p2", + "label": "Busco p1", "name": "Compose text parameter value", "outputs": [ { @@ -2302,8 +2309,8 @@ } ], "position": { - "left": 2866.1328134606147, - "top": 391.6195814165314 + "left": 2579.414063460615, + "top": 70.59525890676582 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2313,7 +2320,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats p2 path" + "newname": "Busco p1 Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2326,16 +2333,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "0bdf6e69-f713-4630-902c-7731475b18d9", + "uuid": "957efbd4-4de7-4828-9d70-f5c819ae0058", "when": null, "workflow_outputs": [ { - "label": "gfastats p2 path", + "label": "Busco p1 Path", "output_name": "out1", - "uuid": "25c99a74-4079-45a5-809b-ad7657afda9b" + "uuid": "941dea07-456e-4f6e-b7ec-5aa1231de628" } ] }, @@ -2350,16 +2357,12 @@ "output_name": "out1" }, "components_2|param_type|component_value": { - "id": 3, - "output_name": "output" - }, - "components_4|param_type|component_value": { "id": 1, "output_name": "output" } }, "inputs": [], - "label": "Busco Purged Hap", + "label": "gfastats p1", "name": "Compose text parameter value", "outputs": [ { @@ -2368,21 +2371,14 @@ } ], "position": { - "left": 3212.92256007387, - "top": 0 + "left": 2616.8792643118272, + "top": 376.49803035834583 }, "post_job_actions": { "HideDatasetActionout1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out1" - }, - "RenameDatasetActionout1": { - "action_arguments": { - "newname": "Busco purged hap Path" - }, - "action_type": "RenameDatasetAction", - "output_name": "out1" } }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1", @@ -2392,16 +2388,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "3ae46b41-80a4-4249-addb-24960c9308ab", + "uuid": "068eef92-ed1e-4c32-8aeb-4692589d154d", "when": null, "workflow_outputs": [ { - "label": "Busco purged hap Path", + "label": "gfastats p1 path", "output_name": "out1", - "uuid": "836dbc1d-d19d-4c3c-bdac-e4c102061c0c" + "uuid": "18c35444-cd38-4b03-9fae-c4c9fff1050c" } ] }, @@ -2416,16 +2412,12 @@ "output_name": "out1" }, "components_2|param_type|component_value": { - "id": 3, - "output_name": "output" - }, - "components_4|param_type|component_value": { "id": 1, "output_name": "output" } }, "inputs": [], - "label": "gfastats purged hap", + "label": "Busco p2", "name": "Compose text parameter value", "outputs": [ { @@ -2434,8 +2426,8 @@ } ], "position": { - "left": 3239.7645671561722, - "top": 407.9932227245923 + "left": 2865.9593643001667, + "top": 77.97373176160778 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2445,7 +2437,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats purged hap Path" + "newname": "Busco p2 Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2458,16 +2450,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "4b815729-433e-4be0-8bd9-e342dd64be24", + "uuid": "e2db4434-b56e-449c-8243-d87c96ba5119", "when": null, "workflow_outputs": [ { - "label": "gfastats purged hap Path", + "label": "Busco p2 Path", "output_name": "out1", - "uuid": "cc25b12e-e9c0-4b81-820f-9ac535819451" + "uuid": "39e8994e-6ad0-45d1-a130-f2edcc55b213" } ] }, @@ -2478,7 +2470,7 @@ "id": 27, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 7, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -2487,7 +2479,7 @@ } }, "inputs": [], - "label": "Bionano", + "label": "gfastats p2", "name": "Compose text parameter value", "outputs": [ { @@ -2496,8 +2488,8 @@ } ], "position": { - "left": 1657.9036346476478, - "top": 1700.6473642552671 + "left": 2866.132813460615, + "top": 391.6195814165314 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2507,7 +2499,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Bionano Path" + "newname": "gfastats p2 path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2520,16 +2512,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"bionano/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "39840a9f-bd21-478d-9ed9-e5dc905e9e0e", + "uuid": "b38ed909-23a2-4336-b1a7-1daef31d78b0", "when": null, "workflow_outputs": [ { - "label": "Bionano Path", + "label": "gfastats p2 path", "output_name": "out1", - "uuid": "8f495388-20b4-4017-9e49-e159ca40b6c9" + "uuid": "25c99a74-4079-45a5-809b-ad7657afda9b" } ] }, @@ -2540,16 +2532,20 @@ "id": 28, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 7, "output_name": "out1" }, "components_2|param_type|component_value": { + "id": 3, + "output_name": "output" + }, + "components_4|param_type|component_value": { "id": 1, "output_name": "output" } }, "inputs": [], - "label": "HIfiasm", + "label": "Busco Purged Hap", "name": "Compose text parameter value", "outputs": [ { @@ -2558,8 +2554,8 @@ } ], "position": { - "left": 1675.993908376659, - "top": 1943.9112693392224 + "left": 3212.9225600738696, + "top": 0.0 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2569,7 +2565,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "HIfiasm Path" + "newname": "Busco purged hap Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2582,16 +2578,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"hIfiasm/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "aa52fcc6-fe52-41fc-9e38-525b0c564989", + "uuid": "f33e6ca2-b826-4f79-84fb-8e242caf64cb", "when": null, "workflow_outputs": [ { - "label": "HIfiasm Path", + "label": "Busco purged hap Path", "output_name": "out1", - "uuid": "ab6b40b7-c5e9-401d-b691-d12d86692ea4" + "uuid": "836dbc1d-d19d-4c3c-bdac-e4c102061c0c" } ] }, @@ -2602,16 +2598,20 @@ "id": 29, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 7, "output_name": "out1" }, "components_2|param_type|component_value": { + "id": 3, + "output_name": "output" + }, + "components_4|param_type|component_value": { "id": 1, "output_name": "output" } }, "inputs": [], - "label": "purge_dups p1", + "label": "gfastats purged hap", "name": "Compose text parameter value", "outputs": [ { @@ -2620,8 +2620,8 @@ } ], "position": { - "left": 1682.0696884174565, - "top": 2221.28145457317 + "left": 3239.7645671561727, + "top": 407.9932227245923 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2631,7 +2631,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "purge_dups Path p1" + "newname": "gfastats purged hap Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2644,16 +2644,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/p1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "d7d9344e-f9b6-4337-a47b-c1ad5cac58bf", + "uuid": "49872b3d-0ef2-4c11-babc-827b3ef12931", "when": null, "workflow_outputs": [ { - "label": "purge_dups Path p1", + "label": "gfastats purged hap Path", "output_name": "out1", - "uuid": "ee7b6407-c087-4eed-a0d8-6019240ffcf2" + "uuid": "cc25b12e-e9c0-4b81-820f-9ac535819451" } ] }, @@ -2664,7 +2664,7 @@ "id": 30, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 13, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -2673,7 +2673,7 @@ } }, "inputs": [], - "label": "Salsa", + "label": "Bionano", "name": "Compose text parameter value", "outputs": [ { @@ -2682,8 +2682,8 @@ } ], "position": { - "left": 1685.5948295520323, - "top": 2496.56766509482 + "left": 1689.3858121269682, + "top": 1654.5706887786594 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2693,7 +2693,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Salsa Path" + "newname": "Bionano Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2706,16 +2706,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"salsa/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"bionano/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "eab68aa2-01eb-45bc-87a4-9c7e8e7e6577", + "uuid": "8abf17d3-0720-411b-adc3-29ed9bc56936", "when": null, "workflow_outputs": [ { - "label": "Salsa Path", + "label": "Bionano Path", "output_name": "out1", - "uuid": "11deb798-17f2-4dce-a4d8-cd878961debf" + "uuid": "8f495388-20b4-4017-9e49-e159ca40b6c9" } ] }, @@ -2726,7 +2726,7 @@ "id": 31, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 13, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -2735,7 +2735,7 @@ } }, "inputs": [], - "label": "purge_dups p2", + "label": "Yahs", "name": "Compose text parameter value", "outputs": [ { @@ -2744,8 +2744,8 @@ } ], "position": { - "left": 2035.5249226421374, - "top": 2240.998127990509 + "left": 1685.5948295520325, + "top": 2496.56766509482 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2755,7 +2755,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "purge_dups Path p2" + "newname": "Yahs Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2768,16 +2768,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/p2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"yahs/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "2bca5b05-21ad-4335-9fd8-b8f4162685e0", + "uuid": "f33c6dd1-6a99-49ae-bdd3-41fde8202ece", "when": null, "workflow_outputs": [ { - "label": "purge_dups Path p2", + "label": "Yahs Path", "output_name": "out1", - "uuid": "c2f04aec-0bd9-4413-8a0e-5a92ac84a9bc" + "uuid": "15fc237e-52e2-4b5e-ab70-c78dc796323e" } ] }, @@ -2788,7 +2788,7 @@ "id": 32, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 13, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -2810,8 +2810,8 @@ } ], "position": { - "left": 2032.121191451342, - "top": 2552.5327778776164 + "left": 1985.611078118081, + "top": 2505.1114842682364 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2837,7 +2837,7 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "6e87aae8-216f-424f-a2b1-9897b7162899", + "uuid": "cd88b059-857f-4562-9495-1ddb04de0712", "when": null, "workflow_outputs": [ { @@ -2849,7 +2849,7 @@ } }, "tags": "", - "uuid": "af494b63-c357-4eff-8de2-03a26424b8c8" + "uuid": "b497c290-1746-4c55-a9ad-e80489960584" }, "tool_id": null, "type": "subworkflow", @@ -3339,6 +3339,6 @@ } }, "tags": [], - "uuid": "1449de0b-7b0b-4b0b-8ea4-8cc62a6e1ee7", - "version": 3 + "uuid": "a9bdc968-aba8-49a2-98ed-f89bdd527463", + "version": 4 } \ No newline at end of file diff --git a/workflows/VGP-assembly-v2/Export-WF8/Galaxy-Workflow-Export_WF8_Scaffolding_HiC.ga b/workflows/VGP-assembly-v2/Export-WF8/Galaxy-Workflow-Export_WF8_Scaffolding_HiC.ga index c8819fdf2..4ce0e89c2 100644 --- a/workflows/VGP-assembly-v2/Export-WF8/Galaxy-Workflow-Export_WF8_Scaffolding_HiC.ga +++ b/workflows/VGP-assembly-v2/Export-WF8/Galaxy-Workflow-Export_WF8_Scaffolding_HiC.ga @@ -1254,14 +1254,14 @@ "name": "Input parameter", "outputs": [], "position": { - "left": 0, + "left": 0.0, "top": 1412.1079716128102 }, "tool_id": null, "tool_state": "{\"parameter_type\": \"text\", \"optional\": false}", "tool_version": null, "type": "parameter_input", - "uuid": "c38f6049-408f-40e3-9737-7a8c873d7da1", + "uuid": "91c27bd0-956d-4e2b-b161-de4e8152d1e3", "when": null, "workflow_outputs": [] }, @@ -1281,14 +1281,14 @@ "name": "Input parameter", "outputs": [], "position": { - "left": 3.0251037183103424, + "left": 3.02510371831022, "top": 1524.9876379842785 }, "tool_id": null, "tool_state": "{\"parameter_type\": \"text\", \"optional\": false}", "tool_version": null, "type": "parameter_input", - "uuid": "df2514d2-74f2-4579-a18d-64de22d480ba", + "uuid": "312604b1-e048-43f1-90e8-a877230120ba", "when": null, "workflow_outputs": [] }, @@ -1308,14 +1308,14 @@ "name": "Input parameter", "outputs": [], "position": { - "left": 5.5771931247935616, - "top": 1605.2654481521888 + "left": 5.577193124793666, + "top": 1605.265448152189 }, "tool_id": null, "tool_state": "{\"parameter_type\": \"text\", \"optional\": false}", "tool_version": null, "type": "parameter_input", - "uuid": "7679e681-5422-4cad-a0e0-3554db0551b4", + "uuid": "2138d803-7ce3-45cb-b099-4524c91bd035", "when": null, "workflow_outputs": [] }, @@ -1335,14 +1335,14 @@ "name": "Input parameter", "outputs": [], "position": { - "left": 3.910500647239937, + "left": 3.910500647240042, "top": 1708.7029117132897 }, "tool_id": null, "tool_state": "{\"parameter_type\": \"text\", \"optional\": false}", "tool_version": null, "type": "parameter_input", - "uuid": "04c39f38-970e-451b-a650-3bb630d8d4f8", + "uuid": "39407efb-bd06-47cb-9d1f-610a08fc6531", "when": null, "workflow_outputs": [] }, @@ -1375,8 +1375,8 @@ } ], "position": { - "left": 517.0355871896256, - "top": 1166.2550557781217 + "left": 517.0355871896254, + "top": 1166.255055778122 }, "post_job_actions": { "RenameDatasetActionout1": { @@ -1397,7 +1397,7 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"species/\"}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/assembly_vgp_\"}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 6, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_2.0/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "b86485d7-063e-4c28-ba5d-cfd34922cf28", + "uuid": "c06a1ebe-f247-4cb5-9457-2ca4b735b67a", "when": null, "workflow_outputs": [ { @@ -1428,8 +1428,8 @@ } ], "position": { - "left": 888.8403252145398, - "top": 1244.1872541863545 + "left": 901.6183860897531, + "top": 1245.813577600024 }, "post_job_actions": { "HideDatasetActionout1": { @@ -1448,7 +1448,7 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"evaluation/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "6582a456-fdb0-4e1d-a717-858d0ff20d27", + "uuid": "429c5ebd-5366-41f9-8533-f7549c616816", "when": null, "workflow_outputs": [ { @@ -1479,7 +1479,7 @@ } ], "position": { - "left": 890.2647477831423, + "left": 890.2647477831424, "top": 1548.1994901006497 }, "post_job_actions": { @@ -1506,7 +1506,7 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"intermediates/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "d7ab3988-5f01-499d-8290-274fef8c5dec", + "uuid": "4e7f0d8a-b1c9-4242-9ae0-9b95193c5eef", "when": null, "workflow_outputs": [ { @@ -1541,8 +1541,8 @@ } ], "position": { - "left": 1271.5669465063231, - "top": 1060.7515977265828 + "left": 1263.6733559531035, + "top": 1049.7775118609338 }, "post_job_actions": { "HideDatasetActionout1": { @@ -1561,7 +1561,7 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "57658471-57f2-4eae-8f84-c9f1f4357560", + "uuid": "be62c7a8-69e4-47de-92c8-2a2b60f4eab7", "when": null, "workflow_outputs": [ { @@ -1584,14 +1584,10 @@ "components_2|param_type|component_value": { "id": 1, "output_name": "output" - }, - "components_4|param_type|component_value": { - "id": 3, - "output_name": "output" } }, "inputs": [], - "label": "Genomescope", + "label": "Busco c", "name": "Compose text parameter value", "outputs": [ { @@ -1600,21 +1596,14 @@ } ], "position": { - "left": 2071.028743964346, - "top": 1316.584827816368 + "left": 1825.5251219377596, + "top": 59.95290260356501 }, "post_job_actions": { "HideDatasetActionout1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out1" - }, - "RenameDatasetActionout1": { - "action_arguments": { - "newname": "Genomescope path" - }, - "action_type": "RenameDatasetAction", - "output_name": "out1" } }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1", @@ -1624,16 +1613,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"genomescope/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_genomescope_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/c/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "f0974de0-9a40-4e2a-afc8-268bb3a21dd1", + "uuid": "44d77d02-6988-43f8-b990-1d840fd3cb6c", "when": null, "workflow_outputs": [ { - "label": "Genomescope path", + "label": "Busco c path", "output_name": "out1", - "uuid": "ea782ff8-9dcf-428c-8661-0f0f00f3231f" + "uuid": "ecf1ee1e-5613-44b4-992f-ed37ecf48548" } ] }, @@ -1648,12 +1637,12 @@ "output_name": "out1" }, "components_2|param_type|component_value": { - "id": 2, + "id": 1, "output_name": "output" } }, "inputs": [], - "label": "Merqury", + "label": "gfastats c ", "name": "Compose text parameter value", "outputs": [ { @@ -1662,8 +1651,8 @@ } ], "position": { - "left": 2408.667576170503, - "top": 1325.4738239975713 + "left": 1828.251862664266, + "top": 392.10255910317744 }, "post_job_actions": { "HideDatasetActionout1": { @@ -1673,7 +1662,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Merqury c path" + "newname": "gfastats c path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -1686,16 +1675,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"merqury/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/c/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "8541357f-1955-4078-b4a6-caf441401b66", + "uuid": "6cbc54c6-dc90-452a-b6d6-33270fcf51e0", "when": null, "workflow_outputs": [ { - "label": "Merqury c path", + "label": "gfastats c path", "output_name": "out1", - "uuid": "080250d0-9459-42f6-bc7b-c7e4534cfdbc" + "uuid": "ff081fcb-2fe0-43d7-87d3-15ae5360cd45" } ] }, @@ -1712,10 +1701,14 @@ "components_2|param_type|component_value": { "id": 1, "output_name": "output" + }, + "components_4|param_type|component_value": { + "id": 3, + "output_name": "output" } }, "inputs": [], - "label": null, + "label": "Genomescope", "name": "Compose text parameter value", "outputs": [ { @@ -1724,8 +1717,8 @@ } ], "position": { - "left": 2676.2542643118272, - "top": 1327.8001744231776 + "left": 2009.9695164575114, + "top": 1334.8267703356214 }, "post_job_actions": { "HideDatasetActionout1": { @@ -1735,7 +1728,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Merqury p path" + "newname": "Genomescope path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -1748,16 +1741,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"merqury/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"genomescope/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_genomescope_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "1b2abf5e-d56e-499a-83da-d503a34f981c", + "uuid": "aa09094c-28fa-4c60-b845-061d02e16ddf", "when": null, "workflow_outputs": [ { - "label": "Merqury p path", + "label": "Genomescope path", "output_name": "out1", - "uuid": "2de757c6-b4ee-44a5-ae36-46b97d7713d8" + "uuid": "ea782ff8-9dcf-428c-8661-0f0f00f3231f" } ] }, @@ -1768,16 +1761,16 @@ "id": 11, "input_connections": { "components_0|param_type|component_value": { - "id": 6, + "id": 5, "output_name": "out1" }, - "components_1|param_type|component_value": { - "id": 3, + "components_2|param_type|component_value": { + "id": 2, "output_name": "output" } }, "inputs": [], - "label": "Intermediate haplotype", + "label": "Merqury", "name": "Compose text parameter value", "outputs": [ { @@ -1786,8 +1779,8 @@ } ], "position": { - "left": 1244.8133244797375, - "top": 1748.2516888238306 + "left": 2305.030736961303, + "top": 1371.303115252299 }, "post_job_actions": { "HideDatasetActionout1": { @@ -1797,7 +1790,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Intermediate haplotype path" + "newname": "Merqury c path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -1810,16 +1803,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"merqury/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "d96ad636-0a3d-4151-8b35-bfeea8272ecc", + "uuid": "cdc0e645-32a0-4c98-8692-36e9fc35a5ca", "when": null, "workflow_outputs": [ { - "label": "Intermediate haplotype path", + "label": "Merqury c path", "output_name": "out1", - "uuid": "863497a1-3a47-4549-bb55-bffad3883a39" + "uuid": "080250d0-9459-42f6-bc7b-c7e4534cfdbc" } ] }, @@ -1830,7 +1823,7 @@ "id": 12, "input_connections": { "components_0|param_type|component_value": { - "id": 6, + "id": 5, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -1839,7 +1832,7 @@ } }, "inputs": [], - "label": "Meryl", + "label": null, "name": "Compose text parameter value", "outputs": [ { @@ -1848,8 +1841,8 @@ } ], "position": { - "left": 1682.7821109186366, - "top": 2734.84891509482 + "left": 2540.3688447995355, + "top": 1498.359788467742 }, "post_job_actions": { "HideDatasetActionout1": { @@ -1859,7 +1852,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Meryl Path" + "newname": "Merqury p path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -1872,16 +1865,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"meryl/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"merqury/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "998fae4c-35aa-4369-8c1b-960614467da3", + "uuid": "47023980-83d1-44e3-abb3-0fc41d965a6d", "when": null, "workflow_outputs": [ { - "label": "Meryl Path", + "label": "Merqury p path", "output_name": "out1", - "uuid": "272b4efc-7a5c-480c-9ec6-660d9a8b89f2" + "uuid": "2de757c6-b4ee-44a5-ae36-46b97d7713d8" } ] }, @@ -1892,16 +1885,16 @@ "id": 13, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, - "components_2|param_type|component_value": { - "id": 1, + "components_1|param_type|component_value": { + "id": 3, "output_name": "output" } }, "inputs": [], - "label": "Busco c", + "label": "Intermediate haplotype", "name": "Compose text parameter value", "outputs": [ { @@ -1910,14 +1903,21 @@ } ], "position": { - "left": 1825.5251219377596, - "top": 59.95290260356503 + "left": 1244.8133244797373, + "top": 1748.2516888238306 }, "post_job_actions": { "HideDatasetActionout1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out1" + }, + "RenameDatasetActionout1": { + "action_arguments": { + "newname": "Intermediate haplotype path" + }, + "action_type": "RenameDatasetAction", + "output_name": "out1" } }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1", @@ -1927,16 +1927,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/c/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "ee07c83e-5711-4f4f-81ec-9e0c2105d6f7", + "uuid": "2091d033-92c0-4022-9de9-89c55f07e5cc", "when": null, "workflow_outputs": [ { - "label": "Busco c path", + "label": "Intermediate haplotype path", "output_name": "out1", - "uuid": "ecf1ee1e-5613-44b4-992f-ed37ecf48548" + "uuid": "863497a1-3a47-4549-bb55-bffad3883a39" } ] }, @@ -1947,7 +1947,7 @@ "id": 14, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -1956,7 +1956,7 @@ } }, "inputs": [], - "label": "gfastats c ", + "label": "HIfiasm", "name": "Compose text parameter value", "outputs": [ { @@ -1965,8 +1965,8 @@ } ], "position": { - "left": 1847.105149048301, - "top": 376.5848460358178 + "left": 1670.441472331765, + "top": 1968.0696604856598 }, "post_job_actions": { "HideDatasetActionout1": { @@ -1976,7 +1976,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats c path" + "newname": "HIfiasm Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -1989,16 +1989,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/c/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"hifiasm/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "7ff27452-4035-4210-848c-12a861351e01", + "uuid": "e63ff59b-f55d-45b4-89f1-2a93af0142e6", "when": null, "workflow_outputs": [ { - "label": "gfastats c path", + "label": "HIfiasm Path", "output_name": "out1", - "uuid": "ff081fcb-2fe0-43d7-87d3-15ae5360cd45" + "uuid": "ab6b40b7-c5e9-401d-b691-d12d86692ea4" } ] }, @@ -2009,7 +2009,7 @@ "id": 15, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -2018,7 +2018,7 @@ } }, "inputs": [], - "label": "Busco s2", + "label": "purge_dups p1", "name": "Compose text parameter value", "outputs": [ { @@ -2027,8 +2027,8 @@ } ], "position": { - "left": 2053.2855507507265, - "top": 77.99109148095542 + "left": 1686.439590118056, + "top": 2214.7096632841826 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2038,7 +2038,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Busco s2 Path" + "newname": "purge_dups Path p1" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2051,16 +2051,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/p1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "b717aa49-1586-47a7-bae4-1acafdd708d9", + "uuid": "5324f53e-a5d9-4739-a83f-cbd1ee6576ed", "when": null, "workflow_outputs": [ { - "label": "Busco s2 Path", + "label": "purge_dups Path p1", "output_name": "out1", - "uuid": "2545849e-3a9f-4b93-acfd-9bbda9b11002" + "uuid": "ee7b6407-c087-4eed-a0d8-6019240ffcf2" } ] }, @@ -2071,7 +2071,7 @@ "id": 16, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -2080,7 +2080,7 @@ } }, "inputs": [], - "label": "gfastats s1", + "label": "purge_dups p2", "name": "Compose text parameter value", "outputs": [ { @@ -2089,8 +2089,8 @@ } ], "position": { - "left": 2092.0703863384133, - "top": 378.8244263325762 + "left": 1991.8492322053908, + "top": 2212.3456427728447 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2100,7 +2100,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats s1 path" + "newname": "purge_dups Path p2" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2113,16 +2113,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/p2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "d8714313-14f5-4bfa-9916-13ba9f6cc153", + "uuid": "bedbdf3c-9eff-49c5-84bc-d318d5f0b511", "when": null, "workflow_outputs": [ { - "label": "gfastats s1 path", + "label": "purge_dups Path p2", "output_name": "out1", - "uuid": "3f789e73-69d4-4d1b-9f8b-986057199d0f" + "uuid": "c2f04aec-0bd9-4413-8a0e-5a92ac84a9bc" } ] }, @@ -2133,20 +2133,16 @@ "id": 17, "input_connections": { "components_0|param_type|component_value": { - "id": 7, + "id": 6, "output_name": "out1" }, "components_2|param_type|component_value": { "id": 1, "output_name": "output" - }, - "components_4|param_type|component_value": { - "id": 3, - "output_name": "output" } }, "inputs": [], - "label": "Pretext s1", + "label": "Meryl", "name": "Compose text parameter value", "outputs": [ { @@ -2155,8 +2151,8 @@ } ], "position": { - "left": 1893.8411346476478, - "top": 1007.2273184880099 + "left": 1682.7821109186361, + "top": 2734.84891509482 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2166,7 +2162,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Pretext s1 path" + "newname": "Meryl Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2179,16 +2175,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"pretext/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"meryl/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "9b865ce1-fc13-4fc0-a7ca-c34b32f5268e", + "uuid": "3f7aaacb-19de-41c7-8017-d25dccccccfa", "when": null, "workflow_outputs": [ { - "label": "Pretext s1 path", + "label": "Meryl Path", "output_name": "out1", - "uuid": "36a3f1e9-402e-48cd-b70f-80901b5f3ff0" + "uuid": "272b4efc-7a5c-480c-9ec6-660d9a8b89f2" } ] }, @@ -2208,7 +2204,7 @@ } }, "inputs": [], - "label": "Busco s1", + "label": "Busco s2", "name": "Compose text parameter value", "outputs": [ { @@ -2217,8 +2213,8 @@ } ], "position": { - "left": 2304.3967549834692, - "top": 66.89734261967101 + "left": 2053.2855507507265, + "top": 77.99109148095545 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2228,7 +2224,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Busco s1 Path" + "newname": "Busco s2 Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2244,13 +2240,13 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "63b266bd-78b7-4154-9e3d-94423dc670b2", + "uuid": "4a1f4ff5-7145-452e-a2f9-6bc28ef683aa", "when": null, "workflow_outputs": [ { - "label": "Busco s1 Path", + "label": "Busco s2 Path", "output_name": "out1", - "uuid": "edd1d288-7361-4f2e-9702-b4a548d7c4b1" + "uuid": "2545849e-3a9f-4b93-acfd-9bbda9b11002" } ] }, @@ -2274,7 +2270,7 @@ } }, "inputs": [], - "label": "Pretext s2", + "label": "Pretext s1", "name": "Compose text parameter value", "outputs": [ { @@ -2283,8 +2279,8 @@ } ], "position": { - "left": 2137.087731254458, - "top": 1010.300119764829 + "left": 1913.9057330959258, + "top": 901.6138446229585 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2294,7 +2290,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Pretext s2 path" + "newname": "Pretext s1 path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2310,13 +2306,13 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"pretext/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "960f659c-abbf-4310-af81-316ebf3d72a2", + "uuid": "6d6a0d0b-1cfc-45a3-89be-97bcf682771e", "when": null, "workflow_outputs": [ { - "label": "Pretext s2 path", + "label": "Pretext s1 path", "output_name": "out1", - "uuid": "18fe7a6c-b603-448f-8448-e5c422aeb6b7" + "uuid": "36a3f1e9-402e-48cd-b70f-80901b5f3ff0" } ] }, @@ -2336,7 +2332,7 @@ } }, "inputs": [], - "label": "gfastats s2", + "label": "gfastats s1", "name": "Compose text parameter value", "outputs": [ { @@ -2345,8 +2341,8 @@ } ], "position": { - "left": 2341.810030403245, - "top": 380.612619764829 + "left": 2092.0703863384133, + "top": 378.8244263325762 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2356,7 +2352,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats s2 path" + "newname": "gfastats s1 path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2369,16 +2365,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "a33409a7-f413-4804-a365-bae779c7ef0f", + "uuid": "04a04199-86c4-42b6-96e1-c205342018d1", "when": null, "workflow_outputs": [ { - "label": "gfastats s2 path", + "label": "gfastats s1 path", "output_name": "out1", - "uuid": "a2a42ac1-ecbc-4371-986c-400faa618d46" + "uuid": "3f789e73-69d4-4d1b-9f8b-986057199d0f" } ] }, @@ -2398,7 +2394,7 @@ } }, "inputs": [], - "label": "Busco p1", + "label": "Busco s1", "name": "Compose text parameter value", "outputs": [ { @@ -2407,8 +2403,8 @@ } ], "position": { - "left": 2579.4140634606147, - "top": 70.59525890676582 + "left": 2304.3967549834697, + "top": 66.89734261967101 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2418,7 +2414,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Busco p1 Path" + "newname": "Busco s1 Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2434,13 +2430,13 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "2c5eef41-840a-4c44-8d26-b9f31eac6dfa", + "uuid": "5f173ce5-dd9a-42be-b4df-419cb7db135d", "when": null, "workflow_outputs": [ { - "label": "Busco p1 Path", + "label": "Busco s1 Path", "output_name": "out1", - "uuid": "941dea07-456e-4f6e-b7ec-5aa1231de628" + "uuid": "edd1d288-7361-4f2e-9702-b4a548d7c4b1" } ] }, @@ -2457,10 +2453,14 @@ "components_2|param_type|component_value": { "id": 1, "output_name": "output" + }, + "components_4|param_type|component_value": { + "id": 3, + "output_name": "output" } }, "inputs": [], - "label": "gfastats p1", + "label": "Pretext s2", "name": "Compose text parameter value", "outputs": [ { @@ -2469,14 +2469,21 @@ } ], "position": { - "left": 2616.8792643118272, - "top": 376.4980303583458 + "left": 2137.087731254458, + "top": 1010.300119764829 }, "post_job_actions": { "HideDatasetActionout1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out1" + }, + "RenameDatasetActionout1": { + "action_arguments": { + "newname": "Pretext s2 path" + }, + "action_type": "RenameDatasetAction", + "output_name": "out1" } }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1", @@ -2486,16 +2493,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"pretext/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "8a853c96-bccc-4ded-9bca-7a66f2b9fb97", + "uuid": "5cf14720-ddb9-4607-8642-45bce71a4720", "when": null, "workflow_outputs": [ { - "label": "gfastats p1 path", + "label": "Pretext s2 path", "output_name": "out1", - "uuid": "18c35444-cd38-4b03-9fae-c4c9fff1050c" + "uuid": "18fe7a6c-b603-448f-8448-e5c422aeb6b7" } ] }, @@ -2515,7 +2522,7 @@ } }, "inputs": [], - "label": "Busco p2", + "label": "gfastats s2", "name": "Compose text parameter value", "outputs": [ { @@ -2524,8 +2531,8 @@ } ], "position": { - "left": 2865.9593643001667, - "top": 77.97373176160781 + "left": 2341.810030403245, + "top": 380.612619764829 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2535,7 +2542,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Busco p2 Path" + "newname": "gfastats s2 path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2548,16 +2555,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "e1fc82f5-5145-4865-882a-f16da5ae03b3", + "uuid": "a169d8f4-b75d-4a29-9132-71cd646e6639", "when": null, "workflow_outputs": [ { - "label": "Busco p2 Path", + "label": "gfastats s2 path", "output_name": "out1", - "uuid": "39e8994e-6ad0-45d1-a130-f2edcc55b213" + "uuid": "a2a42ac1-ecbc-4371-986c-400faa618d46" } ] }, @@ -2577,7 +2584,7 @@ } }, "inputs": [], - "label": "gfastats p2", + "label": "Busco p1", "name": "Compose text parameter value", "outputs": [ { @@ -2586,8 +2593,8 @@ } ], "position": { - "left": 2866.1328134606147, - "top": 391.6195814165314 + "left": 2579.4140634606147, + "top": 70.59525890676582 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2597,7 +2604,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats p2 path" + "newname": "Busco p1 Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2610,16 +2617,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "0bdf6e69-f713-4630-902c-7731475b18d9", + "uuid": "48cb499a-74a4-43c8-8a37-c30f070f2cf8", "when": null, "workflow_outputs": [ { - "label": "gfastats p2 path", + "label": "Busco p1 Path", "output_name": "out1", - "uuid": "25c99a74-4079-45a5-809b-ad7657afda9b" + "uuid": "941dea07-456e-4f6e-b7ec-5aa1231de628" } ] }, @@ -2634,16 +2641,12 @@ "output_name": "out1" }, "components_2|param_type|component_value": { - "id": 3, - "output_name": "output" - }, - "components_4|param_type|component_value": { "id": 1, "output_name": "output" } }, "inputs": [], - "label": "Busco Purged Hap", + "label": "gfastats p1", "name": "Compose text parameter value", "outputs": [ { @@ -2652,21 +2655,14 @@ } ], "position": { - "left": 3212.92256007387, - "top": 0 + "left": 2616.8792643118277, + "top": 376.4980303583458 }, "post_job_actions": { "HideDatasetActionout1": { "action_arguments": {}, "action_type": "HideDatasetAction", "output_name": "out1" - }, - "RenameDatasetActionout1": { - "action_arguments": { - "newname": "Busco purged hap Path" - }, - "action_type": "RenameDatasetAction", - "output_name": "out1" } }, "tool_id": "toolshed.g2.bx.psu.edu/repos/iuc/compose_text_param/compose_text_param/0.1.1", @@ -2676,16 +2672,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "3ae46b41-80a4-4249-addb-24960c9308ab", + "uuid": "f61e35bc-427a-4313-b438-5371b2c9056c", "when": null, "workflow_outputs": [ { - "label": "Busco purged hap Path", + "label": "gfastats p1 path", "output_name": "out1", - "uuid": "836dbc1d-d19d-4c3c-bdac-e4c102061c0c" + "uuid": "18c35444-cd38-4b03-9fae-c4c9fff1050c" } ] }, @@ -2700,16 +2696,12 @@ "output_name": "out1" }, "components_2|param_type|component_value": { - "id": 3, - "output_name": "output" - }, - "components_4|param_type|component_value": { "id": 1, "output_name": "output" } }, "inputs": [], - "label": "gfastats purged hap", + "label": "Busco p2", "name": "Compose text parameter value", "outputs": [ { @@ -2718,8 +2710,8 @@ } ], "position": { - "left": 3239.7645671561722, - "top": 407.9932227245923 + "left": 2865.959364300167, + "top": 77.97373176160784 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2729,7 +2721,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "gfastats purged hap Path" + "newname": "Busco p2 Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2742,16 +2734,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/s1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "4b815729-433e-4be0-8bd9-e342dd64be24", + "uuid": "4d1f27bf-b0a3-4de6-83f7-5d3169065513", "when": null, "workflow_outputs": [ { - "label": "gfastats purged hap Path", + "label": "Busco p2 Path", "output_name": "out1", - "uuid": "cc25b12e-e9c0-4b81-820f-9ac535819451" + "uuid": "39e8994e-6ad0-45d1-a130-f2edcc55b213" } ] }, @@ -2762,7 +2754,7 @@ "id": 27, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 7, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -2771,7 +2763,7 @@ } }, "inputs": [], - "label": "Bionano", + "label": "gfastats p2", "name": "Compose text parameter value", "outputs": [ { @@ -2780,8 +2772,8 @@ } ], "position": { - "left": 1657.9036346476478, - "top": 1700.6473642552671 + "left": 2866.1328134606147, + "top": 391.61958141653133 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2791,7 +2783,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Bionano Path" + "newname": "gfastats p2 path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2804,16 +2796,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"bionano/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/s2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "39840a9f-bd21-478d-9ed9-e5dc905e9e0e", + "uuid": "4725aab1-fcf5-44f2-911f-5d2798c560bc", "when": null, "workflow_outputs": [ { - "label": "Bionano Path", + "label": "gfastats p2 path", "output_name": "out1", - "uuid": "8f495388-20b4-4017-9e49-e159ca40b6c9" + "uuid": "25c99a74-4079-45a5-809b-ad7657afda9b" } ] }, @@ -2824,16 +2816,20 @@ "id": 28, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 7, "output_name": "out1" }, "components_2|param_type|component_value": { + "id": 3, + "output_name": "output" + }, + "components_4|param_type|component_value": { "id": 1, "output_name": "output" } }, "inputs": [], - "label": "HIfiasm", + "label": "Busco Purged Hap", "name": "Compose text parameter value", "outputs": [ { @@ -2842,8 +2838,8 @@ } ], "position": { - "left": 1675.993908376659, - "top": 1943.9112693392224 + "left": 3212.92256007387, + "top": 0.0 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2853,7 +2849,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "HIfiasm Path" + "newname": "Busco purged hap Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2866,16 +2862,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"hIfiasm/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"busco/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "aa52fcc6-fe52-41fc-9e38-525b0c564989", + "uuid": "35381218-39bb-45b7-8c89-331d36b11c3f", "when": null, "workflow_outputs": [ { - "label": "HIfiasm Path", + "label": "Busco purged hap Path", "output_name": "out1", - "uuid": "ab6b40b7-c5e9-401d-b691-d12d86692ea4" + "uuid": "836dbc1d-d19d-4c3c-bdac-e4c102061c0c" } ] }, @@ -2886,16 +2882,20 @@ "id": 29, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 7, "output_name": "out1" }, "components_2|param_type|component_value": { + "id": 3, + "output_name": "output" + }, + "components_4|param_type|component_value": { "id": 1, "output_name": "output" } }, "inputs": [], - "label": "purge_dups p1", + "label": "gfastats purged hap", "name": "Compose text parameter value", "outputs": [ { @@ -2904,8 +2904,8 @@ } ], "position": { - "left": 1682.0696884174565, - "top": 2221.28145457317 + "left": 3239.7645671561722, + "top": 407.99322272459233 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2915,7 +2915,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "purge_dups Path p1" + "newname": "gfastats purged hap Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2928,16 +2928,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/p1/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"gfastats/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "d7d9344e-f9b6-4337-a47b-c1ad5cac58bf", + "uuid": "aa36e2e0-22ea-4723-a543-325e61b462ac", "when": null, "workflow_outputs": [ { - "label": "purge_dups Path p1", + "label": "gfastats purged hap Path", "output_name": "out1", - "uuid": "ee7b6407-c087-4eed-a0d8-6019240ffcf2" + "uuid": "cc25b12e-e9c0-4b81-820f-9ac535819451" } ] }, @@ -2948,7 +2948,7 @@ "id": 30, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 13, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -2957,7 +2957,7 @@ } }, "inputs": [], - "label": "Yahs", + "label": "Bionano", "name": "Compose text parameter value", "outputs": [ { @@ -2966,8 +2966,8 @@ } ], "position": { - "left": 1685.5948295520323, - "top": 2496.56766509482 + "left": 1689.3858121269686, + "top": 1654.5706887786596 }, "post_job_actions": { "HideDatasetActionout1": { @@ -2977,7 +2977,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "Yahs Path" + "newname": "Bionano Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -2990,16 +2990,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"yahs/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"bionano/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "eab68aa2-01eb-45bc-87a4-9c7e8e7e6577", + "uuid": "f3ab6b26-c6d6-4cbf-b210-5f95de2bb6df", "when": null, "workflow_outputs": [ { - "label": "Yahs Path", + "label": "Bionano Path", "output_name": "out1", - "uuid": "5e7502a5-c203-46ea-b3f7-066a685de1f1" + "uuid": "8f495388-20b4-4017-9e49-e159ca40b6c9" } ] }, @@ -3010,7 +3010,7 @@ "id": 31, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 13, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -3019,7 +3019,7 @@ } }, "inputs": [], - "label": "purge_dups p2", + "label": "Yahs", "name": "Compose text parameter value", "outputs": [ { @@ -3028,8 +3028,8 @@ } ], "position": { - "left": 2035.5249226421374, - "top": 2240.998127990509 + "left": 1685.594829552032, + "top": 2496.56766509482 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3039,7 +3039,7 @@ }, "RenameDatasetActionout1": { "action_arguments": { - "newname": "purge_dups Path p2" + "newname": "Yahs Path" }, "action_type": "RenameDatasetAction", "output_name": "out1" @@ -3052,16 +3052,16 @@ "owner": "iuc", "tool_shed": "toolshed.g2.bx.psu.edu" }, - "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/p2/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", + "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"yahs/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "2bca5b05-21ad-4335-9fd8-b8f4162685e0", + "uuid": "526731f4-3a65-4936-898d-a902cdb33f4d", "when": null, "workflow_outputs": [ { - "label": "purge_dups Path p2", + "label": "Yahs Path", "output_name": "out1", - "uuid": "c2f04aec-0bd9-4413-8a0e-5a92ac84a9bc" + "uuid": "15fc237e-52e2-4b5e-ab70-c78dc796323e" } ] }, @@ -3072,7 +3072,7 @@ "id": 32, "input_connections": { "components_0|param_type|component_value": { - "id": 11, + "id": 13, "output_name": "out1" }, "components_2|param_type|component_value": { @@ -3094,8 +3094,8 @@ } ], "position": { - "left": 2032.121191451342, - "top": 2552.5327778776164 + "left": 1985.6110781180814, + "top": 2505.1114842682364 }, "post_job_actions": { "HideDatasetActionout1": { @@ -3121,7 +3121,7 @@ "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"purge_dups/\"}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_purged/\"}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}", "tool_version": "0.1.1", "type": "tool", - "uuid": "6e87aae8-216f-424f-a2b1-9897b7162899", + "uuid": "df17268f-0b03-45da-b908-d00239dec10b", "when": null, "workflow_outputs": [ { @@ -3133,7 +3133,7 @@ } }, "tags": "", - "uuid": "8ccd0f59-b9ac-45df-9bd6-2e4d63a6d236" + "uuid": "2aef0ad6-123e-4d2a-9214-3ad000c402f1" }, "tool_id": null, "type": "subworkflow", @@ -4024,6 +4024,6 @@ } }, "tags": [], - "uuid": "5ae7f06a-5554-4ed4-98f1-e27f63e32bd3", - "version": 7 + "uuid": "00d53d01-2fe5-4d2c-94f8-7bb7746b6cae", + "version": 3 } \ No newline at end of file