diff --git a/workflows/VGP-assembly-v2/Export-WF1-3/Galaxy-Workflow-Export_WF1-3_assembly.ga b/workflows/VGP-assembly-v2/Export-WF1-3/Galaxy-Workflow-Export_WF1-3_assembly.ga
index 93851cf30..9c39ab633 100644
--- a/workflows/VGP-assembly-v2/Export-WF1-3/Galaxy-Workflow-Export_WF1-3_assembly.ga
+++ b/workflows/VGP-assembly-v2/Export-WF1-3/Galaxy-Workflow-Export_WF1-3_assembly.ga
@@ -21,7 +21,7 @@
             "name": "Input parameter",
             "outputs": [],
             "position": {
-                "left": 0.0,
+                "left": 0,
                 "top": 312.8114201007775
             },
             "tool_id": null,
@@ -1549,7 +1549,7 @@
             "post_job_actions": {
                 "RenameDatasetActionoutput": {
                     "action_arguments": {
-                        "newname": "/species/${Species Name}/${Species ID}/assembly_vgp_trio_2.0/evaluation/merqury/${Species ID}_qv"
+                        "newname": "species/${Species Name}/${Species ID}/assembly_vgp_trio_2.0/evaluation/merqury/${Species ID}_qv"
                     },
                     "action_type": "RenameDatasetAction",
                     "output_name": "output"
@@ -1641,7 +1641,7 @@
             "post_job_actions": {
                 "RenameDatasetActionoutput": {
                     "action_arguments": {
-                        "newname": "/species/${Species Name}/${Species ID}/assembly_vgp_trio_2.0/evaluation/merqury/${Species ID}_png"
+                        "newname": "species/${Species Name}/${Species ID}/assembly_vgp_trio_2.0/evaluation/merqury/${Species ID}_png"
                     },
                     "action_type": "RenameDatasetAction",
                     "output_name": "output"
@@ -1688,7 +1688,7 @@
             "post_job_actions": {
                 "RenameDatasetActionoutput": {
                     "action_arguments": {
-                        "newname": "/species/${Species Name}/${Species ID}/assembly_vgp_trio_2.0/evaluation/merqury/${Species ID}_stats"
+                        "newname": "species/${Species Name}/${Species ID}/assembly_vgp_trio_2.0/evaluation/merqury/${Species ID}_stats"
                     },
                     "action_type": "RenameDatasetAction",
                     "output_name": "output"
@@ -1764,7 +1764,7 @@
                         "name": "Input parameter",
                         "outputs": [],
                         "position": {
-                            "left": 0.0,
+                            "left": 0,
                             "top": 1412.1079716128102
                         },
                         "tool_id": null,
@@ -1904,7 +1904,7 @@
                             "owner": "iuc",
                             "tool_shed": "toolshed.g2.bx.psu.edu"
                         },
-                        "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/species/\"}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/assembly_vgp_\"}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 6, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_2.0/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+                        "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"species/\"}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/assembly_vgp_\"}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 6, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_2.0/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}",
                         "tool_version": "0.1.1",
                         "type": "tool",
                         "uuid": "b86485d7-063e-4c28-ba5d-cfd34922cf28",
@@ -3643,7 +3643,7 @@
                     }
                 },
                 "tags": "",
-                "uuid": "f6cb26b6-4417-4526-bafd-0114ecca435c"
+                "uuid": "5be181ed-8459-445e-897a-45decc054893"
             },
             "tool_id": null,
             "type": "subworkflow",
@@ -5027,6 +5027,6 @@
         }
     },
     "tags": [],
-    "uuid": "faf8f363-3ccf-437e-ade1-8cb9e9e9191d",
-    "version": 11
+    "uuid": "a502deb4-a66c-450b-a235-5b4125126b38",
+    "version": 6
 }
\ No newline at end of file
diff --git a/workflows/VGP-assembly-v2/Export-WF1-4/Galaxy-Workflow-Export_WF1-4_Assembly_HiC.ga b/workflows/VGP-assembly-v2/Export-WF1-4/Galaxy-Workflow-Export_WF1-4_Assembly_HiC.ga
index 111056aba..ccbb4af52 100644
--- a/workflows/VGP-assembly-v2/Export-WF1-4/Galaxy-Workflow-Export_WF1-4_Assembly_HiC.ga
+++ b/workflows/VGP-assembly-v2/Export-WF1-4/Galaxy-Workflow-Export_WF1-4_Assembly_HiC.ga
@@ -1873,7 +1873,7 @@
                         "name": "Input parameter",
                         "outputs": [],
                         "position": {
-                            "left": 0.0,
+                            "left": 0,
                             "top": 1412.1079716128102
                         },
                         "tool_id": null,
@@ -2013,7 +2013,7 @@
                             "owner": "iuc",
                             "tool_shed": "toolshed.g2.bx.psu.edu"
                         },
-                        "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/species/\"}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/assembly_vgp_\"}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 6, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_2.0/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+                        "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"species/\"}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/assembly_vgp_\"}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 6, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_2.0/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}",
                         "tool_version": "0.1.1",
                         "type": "tool",
                         "uuid": "b86485d7-063e-4c28-ba5d-cfd34922cf28",
@@ -3752,7 +3752,7 @@
                     }
                 },
                 "tags": "",
-                "uuid": "f6cb26b6-4417-4526-bafd-0114ecca435c"
+                "uuid": "e8ffe3b6-26b6-46e9-ae58-c5e7fde7bc29"
             },
             "tool_id": null,
             "type": "subworkflow",
@@ -5393,6 +5393,6 @@
         }
     },
     "tags": [],
-    "uuid": "6d78aa3f-f071-4905-978f-66e56e4630a8",
-    "version": 10
+    "uuid": "cc8ebedd-cc3c-4087-84a1-a4ae29e84202",
+    "version": 6
 }
\ No newline at end of file
diff --git a/workflows/VGP-assembly-v2/Export-WF2-5/Galaxy-Workflow-Export_WF2-5_Assembly_Trio.ga b/workflows/VGP-assembly-v2/Export-WF2-5/Galaxy-Workflow-Export_WF2-5_Assembly_Trio.ga
index c04fbb382..17fbe3197 100644
--- a/workflows/VGP-assembly-v2/Export-WF2-5/Galaxy-Workflow-Export_WF2-5_Assembly_Trio.ga
+++ b/workflows/VGP-assembly-v2/Export-WF2-5/Galaxy-Workflow-Export_WF2-5_Assembly_Trio.ga
@@ -1809,7 +1809,7 @@
             "post_job_actions": {
                 "RenameDatasetActionoutput": {
                     "action_arguments": {
-                        "newname": "/species/${Species Name}/${Species ID}/assembly_vgp_trio_2.0/evaluation/merqury/${Species ID}_qv"
+                        "newname": "species/${Species Name}/${Species ID}/assembly_vgp_trio_2.0/evaluation/merqury/${Species ID}_qv"
                     },
                     "action_type": "RenameDatasetAction",
                     "output_name": "output"
@@ -1856,7 +1856,7 @@
             "post_job_actions": {
                 "RenameDatasetActionoutput": {
                     "action_arguments": {
-                        "newname": "/species/${Species Name}/${Species ID}/assembly_vgp_trio_2.0/evaluation/merqury/${Species ID}_png"
+                        "newname": "species/${Species Name}/${Species ID}/assembly_vgp_trio_2.0/evaluation/merqury/${Species ID}_png"
                     },
                     "action_type": "RenameDatasetAction",
                     "output_name": "output"
@@ -1903,7 +1903,7 @@
             "post_job_actions": {
                 "RenameDatasetActionoutput": {
                     "action_arguments": {
-                        "newname": "/species/${Species Name}/${Species ID}/assembly_vgp_trio_2.0/evaluation/merqury/${Species ID}_stats"
+                        "newname": "species/${Species Name}/${Species ID}/assembly_vgp_trio_2.0/evaluation/merqury/${Species ID}_stats"
                     },
                     "action_type": "RenameDatasetAction",
                     "output_name": "output"
@@ -1979,7 +1979,7 @@
                         "name": "Input parameter",
                         "outputs": [],
                         "position": {
-                            "left": 0.0,
+                            "left": 0,
                             "top": 1412.1079716128102
                         },
                         "tool_id": null,
@@ -2119,7 +2119,7 @@
                             "owner": "iuc",
                             "tool_shed": "toolshed.g2.bx.psu.edu"
                         },
-                        "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/species/\"}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/assembly_vgp_\"}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 6, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_2.0/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+                        "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"species/\"}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/assembly_vgp_\"}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 6, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_2.0/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}",
                         "tool_version": "0.1.1",
                         "type": "tool",
                         "uuid": "b86485d7-063e-4c28-ba5d-cfd34922cf28",
@@ -3858,7 +3858,7 @@
                     }
                 },
                 "tags": "",
-                "uuid": "f6cb26b6-4417-4526-bafd-0114ecca435c"
+                "uuid": "b217526e-f8f5-491c-ab6a-252ad3359b89"
             },
             "tool_id": null,
             "type": "subworkflow",
@@ -5605,6 +5605,6 @@
         }
     },
     "tags": [],
-    "uuid": "e0267f0a-11a1-416d-8da0-a0898ba6e214",
-    "version": 5
+    "uuid": "265b3c49-46fd-4429-823f-2951ae38a80b",
+    "version": 6
 }
\ No newline at end of file
diff --git a/workflows/VGP-assembly-v2/Export-WF6/Export_WF6_Purgedups.ga b/workflows/VGP-assembly-v2/Export-WF6/Export_WF6_Purgedups.ga
index a7cdf5a26..695cda55c 100644
--- a/workflows/VGP-assembly-v2/Export-WF6/Export_WF6_Purgedups.ga
+++ b/workflows/VGP-assembly-v2/Export-WF6/Export_WF6_Purgedups.ga
@@ -1678,7 +1678,7 @@
                 },
                 "RenameDatasetActionoutput": {
                     "action_arguments": {
-                        "newname": "/species/${Species Name}/${Species ID}/assembly_vgp_${Assembly Method}_2.0/evaluation/merqury/p/${Species ID}_qv"
+                        "newname": "species/${Species Name}/${Species ID}/assembly_vgp_${Assembly Method}_2.0/evaluation/merqury/p/${Species ID}_qv"
                     },
                     "action_type": "RenameDatasetAction",
                     "output_name": "output"
@@ -1724,7 +1724,7 @@
                 },
                 "RenameDatasetActionoutput": {
                     "action_arguments": {
-                        "newname": "/species/${Species Name}/${Species ID}/assembly_vgp_${Assembly Method}_2.0/evaluation/merqury/p/${Species ID}_png"
+                        "newname": "species/${Species Name}/${Species ID}/assembly_vgp_${Assembly Method}_2.0/evaluation/merqury/p/${Species ID}_png"
                     },
                     "action_type": "RenameDatasetAction",
                     "output_name": "output"
@@ -1770,7 +1770,7 @@
                 },
                 "RenameDatasetActionoutput": {
                     "action_arguments": {
-                        "newname": "/species/${Species Name}/${Species ID}/assembly_vgp_${Assembly Method}_2.0/evaluation/merqury/p/${Species ID}_stats"
+                        "newname": "species/${Species Name}/${Species ID}/assembly_vgp_${Assembly Method}_2.0/evaluation/merqury/p/${Species ID}_stats"
                     },
                     "action_type": "RenameDatasetAction",
                     "output_name": "output"
@@ -1840,7 +1840,7 @@
                         "name": "Input parameter",
                         "outputs": [],
                         "position": {
-                            "left": 0.0,
+                            "left": 0,
                             "top": 1412.1079716128104
                         },
                         "tool_id": null,
@@ -1980,7 +1980,7 @@
                             "owner": "iuc",
                             "tool_shed": "toolshed.g2.bx.psu.edu"
                         },
-                        "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/species/\"}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/assembly_vgp_\"}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 6, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_2.0/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+                        "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"species/\"}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/assembly_vgp_\"}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 6, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_2.0/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}",
                         "tool_version": "0.1.1",
                         "type": "tool",
                         "uuid": "9c57b927-c87b-419a-bd6e-c66520e6f7af",
@@ -3239,7 +3239,7 @@
                         ],
                         "position": {
                             "left": 3212.92256007387,
-                            "top": 0.0
+                            "top": 0
                         },
                         "post_job_actions": {
                             "HideDatasetActionout1": {
@@ -3719,7 +3719,7 @@
                     }
                 },
                 "tags": "",
-                "uuid": "a9c6640a-6c95-40d0-b281-9f7b7e9460dd"
+                "uuid": "ee811a1f-aaec-45e7-b578-340c39ddbe2d"
             },
             "tool_id": null,
             "type": "subworkflow",
@@ -5398,7 +5398,7 @@
             },
             "post_job_actions": {},
             "tool_id": "export_remote",
-            "tool_state": "{\"d_uri\": {\"__class__\": \"RuntimeValue\"}, \"export_type\": {\"export_type_selector\": \"datasets_named\", \"__current_case__\": 2, \"datasets\": [{\"__index__\": 0, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 1, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 2, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 3, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 4, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 5, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 6, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 7, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 8, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 9, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 10, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 11, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 12, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 13, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 14, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 15, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 16, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 17, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 18, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 19, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 20, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 21, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 22, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 23, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 24, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 25, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 26, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 27, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}]}, \"include_metadata_files\": true, \"invalid_chars\": \"\", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+            "tool_state": "{\"d_uri\": {\"__class__\": \"RuntimeValue\"}, \"export_type\": {\"export_type_selector\": \"datasets_named\", \"__current_case__\": 2, \"datasets\": [{\"__index__\": 0, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 1, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 2, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 3, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 4, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 5, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 6, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 7, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 8, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 9, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 10, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 11, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 12, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 13, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 14, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 15, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 16, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 17, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 18, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 19, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 20, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 21, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 22, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 23, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 24, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 25, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 26, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 27, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}]}, \"include_metadata_files\": true, \"invalid_chars\": \"\", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
             "tool_version": "0.1.0",
             "type": "tool",
             "uuid": "e3e9e3b7-8492-4ade-b83a-e8e797be0c68",
@@ -5413,6 +5413,6 @@
         }
     },
     "tags": [],
-    "uuid": "126a3fdb-ed18-4158-8b5c-72935a2217e2",
-    "version": 10
+    "uuid": "c6978d3a-6106-4116-bff9-f05b6c9be4a5",
+    "version": 6
 }
\ No newline at end of file
diff --git a/workflows/VGP-assembly-v2/Export-WF6b/Export_WF6b_Purgedups_Single_haplotype.ga b/workflows/VGP-assembly-v2/Export-WF6b/Export_WF6b_Purgedups_Single_haplotype.ga
index 48cb7fad0..97d83cc9c 100644
--- a/workflows/VGP-assembly-v2/Export-WF6b/Export_WF6b_Purgedups_Single_haplotype.ga
+++ b/workflows/VGP-assembly-v2/Export-WF6b/Export_WF6b_Purgedups_Single_haplotype.ga
@@ -1139,7 +1139,7 @@
                 },
                 "RenameDatasetActionoutput": {
                     "action_arguments": {
-                        "newname": "/species/${Species Name}/${Species ID}/assembly_vgp_${Assembly Method}_2.0/evaluation/merqury/${Haplotype}_purged/${Species ID}_qv"
+                        "newname": "species/${Species Name}/${Species ID}/assembly_vgp_${Assembly Method}_2.0/evaluation/merqury/${Haplotype}_purged/${Species ID}_qv"
                     },
                     "action_type": "RenameDatasetAction",
                     "output_name": "output"
@@ -1185,7 +1185,7 @@
                 },
                 "RenameDatasetActionoutput": {
                     "action_arguments": {
-                        "newname": "/species/${Species Name}/${Species ID}/assembly_vgp_${Assembly Method}_2.0/evaluation/merqury/${Haplotype}_purged/${Species ID}_png"
+                        "newname": "species/${Species Name}/${Species ID}/assembly_vgp_${Assembly Method}_2.0/evaluation/merqury/${Haplotype}_purged/${Species ID}_png"
                     },
                     "action_type": "RenameDatasetAction",
                     "output_name": "output"
@@ -1231,7 +1231,7 @@
                 },
                 "RenameDatasetActionoutput": {
                     "action_arguments": {
-                        "newname": "/species/${Species Name}/${Species ID}/assembly_vgp_${Assembly Method}_2.0/evaluation/merqury/${Haplotype}_purged/${Species ID}_stats"
+                        "newname": "species/${Species Name}/${Species ID}/assembly_vgp_${Assembly Method}_2.0/evaluation/merqury/${Haplotype}_purged/${Species ID}_stats"
                     },
                     "action_type": "RenameDatasetAction",
                     "output_name": "output"
@@ -1301,7 +1301,7 @@
                         "name": "Input parameter",
                         "outputs": [],
                         "position": {
-                            "left": 0.0,
+                            "left": 0,
                             "top": 1412.1079716128102
                         },
                         "tool_id": null,
@@ -1441,7 +1441,7 @@
                             "owner": "iuc",
                             "tool_shed": "toolshed.g2.bx.psu.edu"
                         },
-                        "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/species/\"}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/assembly_vgp_\"}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 6, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_2.0/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+                        "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"species/\"}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/assembly_vgp_\"}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 6, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_2.0/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}",
                         "tool_version": "0.1.1",
                         "type": "tool",
                         "uuid": "b86485d7-063e-4c28-ba5d-cfd34922cf28",
@@ -3180,7 +3180,7 @@
                     }
                 },
                 "tags": "",
-                "uuid": "f6cb26b6-4417-4526-bafd-0114ecca435c"
+                "uuid": "5d14fa10-3c76-4b6e-8144-5d6efcafbdcc"
             },
             "tool_id": null,
             "type": "subworkflow",
@@ -4238,6 +4238,6 @@
         }
     },
     "tags": [],
-    "uuid": "3ae2e5d7-72b6-4a52-83c6-67607b29b29c",
-    "version": 64
+    "uuid": "ae5d2369-7d8f-4798-8830-fe741841bdba",
+    "version": 6
 }
\ No newline at end of file
diff --git a/workflows/VGP-assembly-v2/Export-WF7/Galaxy-Workflow-Export_WF7_Scaffolding_Bionano.ga b/workflows/VGP-assembly-v2/Export-WF7/Galaxy-Workflow-Export_WF7_Scaffolding_Bionano.ga
index d97f83605..9a01d67d5 100644
--- a/workflows/VGP-assembly-v2/Export-WF7/Galaxy-Workflow-Export_WF7_Scaffolding_Bionano.ga
+++ b/workflows/VGP-assembly-v2/Export-WF7/Galaxy-Workflow-Export_WF7_Scaffolding_Bionano.ga
@@ -21,8 +21,8 @@
             "name": "Input parameter",
             "outputs": [],
             "position": {
-                "left": 0.0,
-                "top": 0.0
+                "left": 0,
+                "top": 0
             },
             "tool_id": null,
             "tool_state": "{\"parameter_type\": \"text\", \"optional\": false}",
@@ -970,7 +970,7 @@
                         "name": "Input parameter",
                         "outputs": [],
                         "position": {
-                            "left": 0.0,
+                            "left": 0,
                             "top": 1412.1079716128102
                         },
                         "tool_id": null,
@@ -1110,7 +1110,7 @@
                             "owner": "iuc",
                             "tool_shed": "toolshed.g2.bx.psu.edu"
                         },
-                        "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/species/\"}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/assembly_vgp_\"}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 6, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_2.0/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+                        "tool_state": "{\"components\": [{\"__index__\": 0, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"species/\"}}, {\"__index__\": 1, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 2, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/\"}}, {\"__index__\": 3, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 4, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"/assembly_vgp_\"}}, {\"__index__\": 5, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": {\"__class__\": \"ConnectedValue\"}}}, {\"__index__\": 6, \"param_type\": {\"select_param_type\": \"text\", \"__current_case__\": 0, \"component_value\": \"_2.0/\"}}], \"__page__\": null, \"__rerun_remap_job_id__\": null}",
                         "tool_version": "0.1.1",
                         "type": "tool",
                         "uuid": "b86485d7-063e-4c28-ba5d-cfd34922cf28",
@@ -2849,7 +2849,7 @@
                     }
                 },
                 "tags": "",
-                "uuid": "f6cb26b6-4417-4526-bafd-0114ecca435c"
+                "uuid": "af494b63-c357-4eff-8de2-03a26424b8c8"
             },
             "tool_id": null,
             "type": "subworkflow",
@@ -3324,7 +3324,7 @@
                 }
             },
             "tool_id": "export_remote",
-            "tool_state": "{\"d_uri\": {\"__class__\": \"RuntimeValue\"}, \"export_type\": {\"export_type_selector\": \"datasets_named\", \"__current_case__\": 2, \"datasets\": [{\"__index__\": 0, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 1, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 2, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 3, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 4, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 5, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 6, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 7, \"infile\": {\"__class__\": \"RuntimeValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}]}, \"include_metadata_files\": false, \"invalid_chars\": \"\", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
+            "tool_state": "{\"d_uri\": {\"__class__\": \"RuntimeValue\"}, \"export_type\": {\"export_type_selector\": \"datasets_named\", \"__current_case__\": 2, \"datasets\": [{\"__index__\": 0, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 1, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 2, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 3, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 4, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 5, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 6, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}, {\"__index__\": 7, \"infile\": {\"__class__\": \"ConnectedValue\"}, \"name\": {\"__class__\": \"ConnectedValue\"}}]}, \"include_metadata_files\": false, \"invalid_chars\": \"\", \"__page__\": null, \"__rerun_remap_job_id__\": null}",
             "tool_version": "0.1.0",
             "type": "tool",
             "uuid": "50ecc578-14ca-4209-a300-c1426ba29d17",
@@ -3339,6 +3339,6 @@
         }
     },
     "tags": [],
-    "uuid": "f454d967-bbb5-41b2-9682-3dc79b024e0c",
-    "version": 2
+    "uuid": "1449de0b-7b0b-4b0b-8ea4-8cc62a6e1ee7",
+    "version": 3
 }
\ No newline at end of file