From d0c6444df9c49df091c918f84de6779bd24dcdd8 Mon Sep 17 00:00:00 2001 From: planemo-autoupdate Date: Mon, 1 Apr 2024 04:28:47 +0000 Subject: [PATCH] Updating workflows/VGP-assembly-v2/Scaffolding-Bionano-VGP7 from 0.1.2 to 0.1.3 --- .../Scaffolding-Bionano-VGP7/CHANGELOG.md | 5 + .../Scaffolding-BioNano-VGP7.ga | 130 +++--------------- 2 files changed, 25 insertions(+), 110 deletions(-) diff --git a/workflows/VGP-assembly-v2/Scaffolding-Bionano-VGP7/CHANGELOG.md b/workflows/VGP-assembly-v2/Scaffolding-Bionano-VGP7/CHANGELOG.md index 7c8537fc6..8a3d28224 100644 --- a/workflows/VGP-assembly-v2/Scaffolding-Bionano-VGP7/CHANGELOG.md +++ b/workflows/VGP-assembly-v2/Scaffolding-Bionano-VGP7/CHANGELOG.md @@ -1,5 +1,10 @@ # Changelog +## [0.1.3] 2024-04-01 + +### Automatic update +- `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0` was updated to `toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1` + ## [0.1.2] 2024-03-04 ### Automatic update diff --git a/workflows/VGP-assembly-v2/Scaffolding-Bionano-VGP7/Scaffolding-BioNano-VGP7.ga b/workflows/VGP-assembly-v2/Scaffolding-Bionano-VGP7/Scaffolding-BioNano-VGP7.ga index 051322a18..cd3691f4b 100644 --- a/workflows/VGP-assembly-v2/Scaffolding-Bionano-VGP7/Scaffolding-BioNano-VGP7.ga +++ b/workflows/VGP-assembly-v2/Scaffolding-Bionano-VGP7/Scaffolding-BioNano-VGP7.ga @@ -14,7 +14,7 @@ ], "format-version": "0.1", "license": "CC-BY-4.0", - "release": "0.1.2", + "release": "0.1.3", "name": "Scaffolding-BioNano-VGP7", "steps": { "0": { @@ -142,12 +142,7 @@ "output_name": "output" } }, - "inputs": [ - { - "description": "runtime parameter for tool Parse parameter value", - "name": "input1" - } - ], + "inputs": [], "label": null, "name": "Parse parameter value", "outputs": [ @@ -187,10 +182,6 @@ } }, "inputs": [ - { - "description": "runtime parameter for tool gfastats", - "name": "input_file" - }, { "description": "runtime parameter for tool gfastats", "name": "mode_condition" @@ -242,20 +233,7 @@ "output_name": "output" } }, - "inputs": [ - { - "description": "runtime parameter for tool Bionano Hybrid Scaffold", - "name": "bionano_cmap" - }, - { - "description": "runtime parameter for tool Bionano Hybrid Scaffold", - "name": "conflict_resolution" - }, - { - "description": "runtime parameter for tool Bionano Hybrid Scaffold", - "name": "ngs_fasta" - } - ], + "inputs": [], "label": null, "name": "Bionano Hybrid Scaffold", "outputs": [ @@ -375,10 +353,6 @@ } }, "inputs": [ - { - "description": "runtime parameter for tool gfastats", - "name": "input_file" - }, { "description": "runtime parameter for tool gfastats", "name": "mode_condition" @@ -444,10 +418,6 @@ } }, "inputs": [ - { - "description": "runtime parameter for tool gfastats", - "name": "input_file" - }, { "description": "runtime parameter for tool gfastats", "name": "mode_condition" @@ -509,12 +479,7 @@ "output_name": "integer_param" } }, - "inputs": [ - { - "description": "runtime parameter for tool gfastats", - "name": "input_file" - } - ], + "inputs": [], "label": null, "name": "gfastats", "outputs": [ @@ -567,12 +532,7 @@ "output_name": "output" } }, - "inputs": [ - { - "description": "runtime parameter for tool gfastats", - "name": "input_file" - } - ], + "inputs": [], "label": null, "name": "gfastats", "outputs": [ @@ -663,12 +623,7 @@ "output_name": "output" } }, - "inputs": [ - { - "description": "runtime parameter for tool Sort", - "name": "input" - } - ], + "inputs": [], "label": null, "name": "Sort", "outputs": [ @@ -698,7 +653,7 @@ }, "2": { "annotation": "", - "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0", + "content_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1", "errors": null, "id": 2, "input_connections": { @@ -707,12 +662,7 @@ "output_name": "out_file1" } }, - "inputs": [ - { - "description": "runtime parameter for tool Text reformatting", - "name": "infile" - } - ], + "inputs": [], "label": null, "name": "Text reformatting", "outputs": [ @@ -732,15 +682,15 @@ "output_name": "outfile" } }, - "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy0", + "tool_id": "toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/9.3+galaxy1", "tool_shed_repository": { - "changeset_revision": "12615d397df7", + "changeset_revision": "fbf99087e067", "name": "text_processing", "owner": "bgruening", "tool_shed": "toolshed.g2.bx.psu.edu" }, "tool_state": "{\"code\": \"{total += $2; $3 = total}1\", \"infile\": {\"__class__\": \"ConnectedValue\"}, \"__page__\": null, \"__rerun_remap_job_id__\": null}", - "tool_version": "9.3+galaxy0", + "tool_version": "9.3+galaxy1", "type": "tool", "uuid": "69c7b2e7-5c82-49ec-8301-737e5ec1739b", "when": null, @@ -757,12 +707,7 @@ "output_name": "outfile" } }, - "inputs": [ - { - "description": "runtime parameter for tool Datamash", - "name": "in_file" - } - ], + "inputs": [], "label": null, "name": "Datamash", "outputs": [ @@ -807,12 +752,7 @@ "output_name": "outfile" } }, - "inputs": [ - { - "description": "runtime parameter for tool Add column", - "name": "input" - } - ], + "inputs": [], "label": null, "name": "Add column", "outputs": [ @@ -851,12 +791,7 @@ "output_name": "out_file" } }, - "inputs": [ - { - "description": "runtime parameter for tool Parse parameter value", - "name": "input1" - } - ], + "inputs": [], "label": null, "name": "Parse parameter value", "outputs": [ @@ -944,12 +879,7 @@ "output_name": "out1" } }, - "inputs": [ - { - "description": "runtime parameter for tool Compute", - "name": "input" - } - ], + "inputs": [], "label": null, "name": "Compute", "outputs": [ @@ -993,7 +923,7 @@ } }, "tags": "", - "uuid": "8c62f0a6-3009-43d0-b986-5a7909c91474" + "uuid": "0d43f853-69ee-4f89-9a1d-50cfa45ec0fd" }, "tool_id": null, "type": "subworkflow", @@ -1012,12 +942,7 @@ "output_name": "gfastats data for plotting" } }, - "inputs": [ - { - "description": "runtime parameter for tool Cut", - "name": "input" - } - ], + "inputs": [], "label": null, "name": "Cut", "outputs": [ @@ -1056,12 +981,7 @@ "output_name": "gfastats data for plotting" } }, - "inputs": [ - { - "description": "runtime parameter for tool Cut", - "name": "input" - } - ], + "inputs": [], "label": null, "name": "Cut", "outputs": [ @@ -1100,12 +1020,7 @@ "output_name": "out_file1" } }, - "inputs": [ - { - "description": "runtime parameter for tool Scatterplot with ggplot2", - "name": "input1" - } - ], + "inputs": [], "label": null, "name": "Scatterplot with ggplot2", "outputs": [ @@ -1158,12 +1073,7 @@ "output_name": "out_file1" } }, - "inputs": [ - { - "description": "runtime parameter for tool Scatterplot with ggplot2", - "name": "input1" - } - ], + "inputs": [], "label": null, "name": "Scatterplot with ggplot2", "outputs": [