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PathML 3.0.0: New Features and User Experience Improvements #429

Merged
merged 369 commits into from
Nov 1, 2024
Merged

PathML 3.0.0: New Features and User Experience Improvements #429

merged 369 commits into from
Nov 1, 2024
This pull request is big! We’re only showing the most recent 250 commits.

Commits on Dec 2, 2023

  1. Changes spams installation in github workflows

    @VarunUllanat
    VarunUllanat committed Dec 2, 2023
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  2. Merge pull request #387 from VarunUllanat/dev_graph 

    Changes spams installation in github workflows
    @VarunUllanat
    VarunUllanat authored Dec 2, 2023
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  3. Updated skimage version for importing the graph module

    @VarunUllanat
    VarunUllanat committed Dec 2, 2023
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  4. Merge pull request #389 from VarunUllanat/dev_graph 

    Updated skimage version for importing the graph module
    @VarunUllanat
    VarunUllanat authored Dec 2, 2023
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  5. merging graphapi with tilestitching

    @sreekarreddydfci
    sreekarreddydfci committed Dec 2, 2023
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  6. Modified skimage graph import

    @sreekarreddydfci
    sreekarreddydfci committed Dec 2, 2023
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Commits on Dec 4, 2023

  1. Added tilestitching code

    @sreekarreddydfci
    sreekarreddydfci committed Dec 4, 2023
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  2. Update environment.yml 

    Added JPype1
    @sreekarreddydfci
    sreekarreddydfci authored Dec 4, 2023
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  3. Create testdata folder for tilestitching data

    @sreekarreddydfci
    sreekarreddydfci authored Dec 4, 2023
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  4. Add large .tif file with Git LFS

    @sreekarreddydfci
    sreekarreddydfci committed Dec 4, 2023
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  5. ≈Merge branch 'dev_graphAPI' of https://github.com/sreekarreddydfci/p… 

    …athml into dev_graphAPI
    @sreekarreddydfci
    sreekarreddydfci committed Dec 4, 2023
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  6. Remove readme file in tests

    @sreekarreddydfci
    sreekarreddydfci committed Dec 4, 2023
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  7. Update tests-conda.yml 

    Separately executed test cases for tilestitching functionality and other PathML modules.
    @sreekarreddydfci
    sreekarreddydfci authored Dec 4, 2023
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  8. Added exclude marker to run tests

    @sreekarreddydfci
    sreekarreddydfci committed Dec 4, 2023
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  9. Merge branch 'dev_graphAPI' of https://github.com/sreekarreddydfci/pa… 

    …thml into dev_graphAPI
    @sreekarreddydfci
    sreekarreddydfci committed Dec 4, 2023
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  10. Edited a testcase

    @sreekarreddydfci
    sreekarreddydfci committed Dec 4, 2023
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  11. Commented testcases

    @sreekarreddydfci
    sreekarreddydfci committed Dec 4, 2023
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  12. Merge pull request #391 from sreekarreddydfci/dev_graphAPI 

    Added tilestitching code
    @VarunUllanat
    VarunUllanat authored Dec 4, 2023
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Commits on Dec 5, 2023

  1. Pasted the code from graphAPI

    @sreekarreddydfci
    sreekarreddydfci committed Dec 5, 2023
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  2. Update environment.yml

    @sreekarreddydfci
    sreekarreddydfci authored Dec 5, 2023
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  3. Added testcases

    @sreekarreddydfci
    sreekarreddydfci committed Dec 5, 2023
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  4. Added test cases and environment file

    @sreekarreddydfci
    sreekarreddydfci committed Dec 5, 2023
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  5. Updated env

    @sreekarreddydfci
    sreekarreddydfci committed Dec 5, 2023
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  6. Updated env

    @sreekarreddydfci
    sreekarreddydfci committed Dec 5, 2023
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Commits on Dec 6, 2023

  1. Merge pull request #393 from sreekarreddydfci/dev-tilestitching 

    Dev tilestitching
    @sreekarreddydfci
    sreekarreddydfci authored Dec 6, 2023
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  2. Make flake8 compliant

    @VarunUllanat
    VarunUllanat committed Dec 6, 2023
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  3. Removed tile stiching generated files

    @VarunUllanat
    VarunUllanat committed Dec 6, 2023
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  4. Make flake8 compliant

    @VarunUllanat
    VarunUllanat committed Dec 6, 2023
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  5. Flake8 compliant

    @VarunUllanat
    VarunUllanat committed Dec 6, 2023
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  6. Merge branch 'dev_graph' into dev-tilestitching

    @VarunUllanat
    VarunUllanat authored Dec 6, 2023
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  7. Merge pull request #394 from Dana-Farber-AIOS/dev-tilestitching 

    Dev tilestitching
    @VarunUllanat
    VarunUllanat authored Dec 6, 2023
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  8. Merge branch 'dev_graph' into dev-onnx

    @VarunUllanat
    VarunUllanat authored Dec 6, 2023
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  9. Merge pull request #397 from Dana-Farber-AIOS/dev-onnx 

    Merge dev_onnx into dev_graph
    @VarunUllanat
    VarunUllanat authored Dec 6, 2023
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  10. Delete unwanted files

    @VarunUllanat
    VarunUllanat authored Dec 6, 2023
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  11. Removed unwanted coverage files

    @VarunUllanat
    VarunUllanat committed Dec 6, 2023
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Commits on Dec 12, 2023

  1. Refactored tile-stitching and testcases code

    @sreekarreddydfci
    sreekarreddydfci committed Dec 12, 2023
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Commits on Dec 13, 2023

  1. Merge pull request #400 from sreekarreddydfci/dev-tilestitching 

    Refactored tile-stitching and testcases code
    @VarunUllanat
    VarunUllanat authored Dec 13, 2023
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  2. adjusting doc strings and pushing docs files

    @jamesgwen
    jamesgwen committed Dec 13, 2023
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  3. adding more rst files

    @jamesgwen
    jamesgwen committed Dec 13, 2023
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  4. adjusting inference rst file

    @jamesgwen
    jamesgwen committed Dec 13, 2023
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  5. adding more doc strings

    @jamesgwen
    jamesgwen committed Dec 13, 2023
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Commits on Dec 14, 2023

  1. adding more code to the inference page

    @jamesgwen
    jamesgwen committed Dec 14, 2023
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Commits on Dec 15, 2023

  1. Added docstrings

    @sreekarreddydfci
    sreekarreddydfci committed Dec 15, 2023
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  2. Updated docs

    @sreekarreddydfci
    sreekarreddydfci committed Dec 15, 2023
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  3. Update README.md 

    Added libmamba instructions and updated jdk 17 installation steps.
    @sreekarreddydfci
    sreekarreddydfci authored Dec 15, 2023
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  4. Update README.md 

    Updated colab installation instructions
    @sreekarreddydfci
    sreekarreddydfci authored Dec 15, 2023
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Commits on Dec 18, 2023

  1. adjusted doc strings

    @jamesgwen
    jamesgwen committed Dec 18, 2023
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Commits on Dec 19, 2023

  1. Update tests-conda.yml 

    Addded Python 3.10 to run tests on
    @sreekarreddydfci
    sreekarreddydfci authored Dec 19, 2023
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  2. Update tests-conda.yml

    @sreekarreddydfci
    sreekarreddydfci authored Dec 19, 2023
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Commits on Dec 20, 2023

  1. Added cuda instructions for environment creation

    @VarunUllanat
    VarunUllanat committed Dec 20, 2023
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  2. Added torchvision install to github workflows

    @VarunUllanat
    VarunUllanat committed Dec 20, 2023
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  3. fixing no h5manager error

    @jamesgwen
    jamesgwen committed Dec 20, 2023
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Commits on Dec 21, 2023

  1. Update environment.yml 

    Updated package versions to resolve py 3.10 env
    @sreekarreddydfci
    sreekarreddydfci authored Dec 21, 2023
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  2. Update environment.yml

    @sreekarreddydfci
    sreekarreddydfci authored Dec 21, 2023
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  3. Update environment.yml

    @sreekarreddydfci
    sreekarreddydfci authored Dec 21, 2023
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  4. Update environment.yml

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    sreekarreddydfci authored Dec 21, 2023
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Commits on Dec 22, 2023

  1. Update environment.yml 

    Specified versions for all packages
    @sreekarreddydfci
    sreekarreddydfci authored Dec 22, 2023
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Commits on Jan 22, 2024

  1. Added Graph Components 

    Added centroid graph builder and modified postprocess hovernet.
    @sreekarreddydfci
    sreekarreddydfci committed Jan 22, 2024
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  2. Added remove functionality to TileStitcher 

    Added file remove functionality to tile stitcher
    @sreekarreddydfci
    sreekarreddydfci committed Jan 22, 2024
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  3. Merge pull request #407 from sreekarreddydfci/dev-tilestitching 

    Added graph components
    @sreekarreddydfci
    sreekarreddydfci authored Jan 22, 2024
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Commits on Jan 25, 2024

  1. Merge pull request #408 from Dana-Farber-AIOS/dev-tilestitching 

    Added additional functionalities
    @VarunUllanat
    VarunUllanat authored Jan 25, 2024
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Commits on Jan 26, 2024

  1. Bug fixes 

    Made chages to be compatible on windows.
    @sreekarreddydfci
    sreekarreddydfci committed Jan 26, 2024
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Commits on Jan 30, 2024

  1. Make flake8 compliant

    @VarunUllanat
    VarunUllanat committed Jan 30, 2024
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  2. Added test_cases and bug fixes. 

    1. Added "from .h5managers import h5pathManager" to fix "AttributeError: module 'pathml.core' has no attribute 'h5managers'"

2. Added test cases.
    @sreekarreddydfci
    sreekarreddydfci committed Jan 30, 2024
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  3. precommit fixes

    @sreekarreddydfci
    sreekarreddydfci committed Jan 30, 2024
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  4. precommit fixes

    @sreekarreddydfci
    sreekarreddydfci committed Jan 30, 2024
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  5. precommit fixes

    @sreekarreddydfci
    sreekarreddydfci committed Jan 30, 2024
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  6. Merge pull request #410 from sreekarreddydfci/dev-tilestitching 

    Added test cases and bug fixes
    @sreekarreddydfci
    sreekarreddydfci authored Jan 30, 2024
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  7. Update readme 

    Update installation instructions for windows
    @sreekarreddydfci
    sreekarreddydfci committed Jan 30, 2024
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  8. Update Readme

    @sreekarreddydfci
    sreekarreddydfci committed Jan 30, 2024
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  9. Update tests-conda.yml 

    Added torchvision, to run depended testcases.
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    sreekarreddydfci authored Jan 30, 2024
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Commits on Jan 31, 2024

  1. Merge pull request #412 from sreekarreddydfci/dev-tilestitching 

    Updated Readme
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  2. Merge branch 'dev_graph' into dev-tilestitching

    @sreekarreddydfci
    sreekarreddydfci authored Jan 31, 2024
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  3. Merge pull request #411 from Dana-Farber-AIOS/dev-tilestitching 

    Added test cases and bug fixes
    @VarunUllanat
    VarunUllanat authored Jan 31, 2024
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  4. Cleaned up code

    @VarunUllanat
    VarunUllanat committed Jan 31, 2024
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  5. Make black compliant again

    @VarunUllanat
    VarunUllanat committed Jan 31, 2024
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  6. Make flake8 compliant

    @VarunUllanat
    VarunUllanat committed Jan 31, 2024
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  7. Merge updates from upstream/dev_graph

    @sreekarreddydfci
    sreekarreddydfci committed Jan 31, 2024
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Commits on Feb 1, 2024

  1. Make pre-commit compliant

    @VarunUllanat
    VarunUllanat committed Feb 1, 2024
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  2. Added test cases

    @sreekarreddydfci
    sreekarreddydfci committed Feb 1, 2024
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  3. Revert "Added test cases" 

    This reverts commit 0e7cace.
    @sreekarreddydfci
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  4. Added test cases

    @sreekarreddydfci
    sreekarreddydfci committed Feb 1, 2024
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  5. Added deepfocus tests

    @sreekarreddydfci
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  6. Merge pull request #414 from sreekarreddydfci/dev-tilestitching 

    Added test cases
    @sreekarreddydfci
    sreekarreddydfci authored Feb 1, 2024
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  7. Delete README-Copy1.md

    @sreekarreddydfci
    sreekarreddydfci authored Feb 1, 2024
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  8. Delete dummy_stitched_image_path.ome.tif

    @sreekarreddydfci
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  9. Merge pull request #415 from Dana-Farber-AIOS/dev-tilestitching 

    Added test cases
    @VarunUllanat
    VarunUllanat authored Feb 1, 2024
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Commits on Feb 6, 2024

  1. Updated environment files and removed deepcell

    @VarunUllanat
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  2. Updated environment files to contain numpy versions

    @VarunUllanat
    VarunUllanat committed Feb 6, 2024
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  3. Make black compliant without pre-commit

    @VarunUllanat
    VarunUllanat committed Feb 6, 2024
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  4. Update precommit-hooks.yaml to python 3.10

    @VarunUllanat
    VarunUllanat authored Feb 6, 2024
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  5. Update precommit-hooks.yaml

    @VarunUllanat
    VarunUllanat authored Feb 6, 2024
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  6. Update precommit-hooks.yaml

    @VarunUllanat
    VarunUllanat authored Feb 6, 2024
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  7. Update precommit-hooks.yaml

    @VarunUllanat
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  8. ensure pre-commit compliant

    @VarunUllanat
    VarunUllanat committed Feb 6, 2024
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  9. Merge branch 'dev_graph' of https://github.com/Dana-Farber-AIOS/pathml … 

    …into dev_graph
    @VarunUllanat
    VarunUllanat committed Feb 6, 2024
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  10. changed local pre-commit

    @VarunUllanat
    VarunUllanat committed Feb 6, 2024
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  11. Update precommit-hooks.yaml

    @VarunUllanat
    VarunUllanat authored Feb 6, 2024
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  12. Make pre-commit compliant

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  13. Update tests-conda.yml

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  14. Update tests-conda.yml

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  15. revert back to old environment

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  16. Merge branch 'dev_graph' of https://github.com/Dana-Farber-AIOS/pathml … 

    …into dev_graph
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  17. Update tests-conda.yml to remove Deepcell install

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  18. Update tests-conda.yml to free space

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Commits on Feb 7, 2024

  1. Added testcases 

    1. Added test cases, with custom error handling for tile stitching.
2. Included example notebooks with changes.
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  2. Merge pull request #417 from sreekarreddydfci/dev-tilestitching 

    Added testcases and updated example notebooks
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  3. Merge remote-tracking branch 'upstream/dev_graph' into dev-tilestitching

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  4. Merge pull request #418 from Dana-Farber-AIOS/dev-tilestitching 

    Added testcases and updated example notebooks
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Commits on Feb 8, 2024

  1. Added new two-hop computation

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  2. Merge branch 'dev_graph' of https://github.com/Dana-Farber-AIOS/pathml … 

    …into dev_graph
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  3. Added python version in environment file

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  4. Removed deepcell installation

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Commits on Feb 9, 2024

  1. Updated graph utils and clean

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Commits on Feb 15, 2024

  1. Update test_inference.py

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  2. Update test_inference.py

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Commits on Feb 21, 2024

  1. Updated stain normalization class

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  2. Updated stain normalization class

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  3. `Merge branch 'dev_graph' of https://github.com/Dana-Farber-AIOS/pathml… 

    … into dev_graph
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  4. Updated graph utils tests

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Commits on Feb 22, 2024

  1. Updated example notebooks

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  2. Merge remote-tracking branch 'upstream/dev_graph' into dev-tilestitching

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  3. Updated graphs notebook

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  4. Added documentation for graph API

    @VarunUllanat
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  5. Merge pull request #419 from sreekarreddydfci/dev-tilestitching 

    Updated example notebooks
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  6. Merge pull request #420 from Dana-Farber-AIOS/dev-tilestitching 

    Updated example notebooks
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Commits on Feb 23, 2024

  1. Updated environment file, added instructions and references

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  2. Cleaned up examples and setup.py

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Commits on Feb 26, 2024

  1. Updated notebooks and docs

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  2. Updated notebooks and docs

    @VarunUllanat
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  3. Added JCO example

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  4. Added JCO example

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Commits on Feb 27, 2024

  1. Reformatted README installation instructions

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    VarunUllanat committed Feb 27, 2024
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  2. Update README.md

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Commits on Feb 28, 2024

  1. Update README.md

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  2. Update README.md

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  3. Update setup.py to add torch cuda installation

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  4. Update README.md

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  5. Added comments for stain normalization

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Commits on Mar 1, 2024

  1. Added our implementation of mesmer model

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Commits on Mar 4, 2024

  1. Adding note on where mesmer output is saved to doc string

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  2. Adjusting the header in mesmer utils file to contain citation

    @jamesgwen
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  3. Added betters tests for segmentmif

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  4. Added no coverage comments

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Commits on Mar 5, 2024

  1. Added environment for mac, updated instructions and docs

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  2. Minor edits in README

    @VarunUllanat
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  3. Removed deepcell in test environment

    @VarunUllanat
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Commits on Mar 6, 2024

  1. Create test_windows.yml

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  2. adding mesmer to the rst documentation

    @jamesgwen
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  3. adjusting doc strings for the memser class

    @jamesgwen
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  4. adding new inference notebook

    @jamesgwen
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  5. Merge branch 'Dana-Farber-AIOS:dev_graph' into dev_graph

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  6. Create tests-macos.yml

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  7. Update tests-macos.yml

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  8. Added github workflow files

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  9. Updated windows tests

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  10. Update tests-windows.yml

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  11. Update tests-windows.yml

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  12. Create env-py310.yml

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  13. Create env-py38.yml

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  14. Update env-py310.yml

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  15. Create env-py39.yml

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  16. Delete .github/ci-environments/windows-env.yml

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  17. specified utf-8 encoding in setup.py

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  18. fixed undefined version in setup.py

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  19. Added macos tests

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  20. Added skip statements in tests for windows and macos compatibility

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  21. Added skip statements in tests for windows and macos compatibility

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Commits on Mar 7, 2024

  1. Updated tests to remove deepcell dependency

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  2. Fixed small bug in mesmer import

    @VarunUllanat
    VarunUllanat committed Mar 7, 2024
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  3. Added windows bug fixes and tests skipping dask stuff

    @VarunUllanat
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  4. Update tests-macos.yml to be verbose

    @VarunUllanat
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  5. Fixed bugs in windows testing

    @VarunUllanat
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  6. Merge branch 'dev_graph' of https://github.com/VarunUllanat/pathml in… 

    …to dev_graph
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  7. Small change in tile size for segmentmif tests

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  8. Added path permission fixes for windows

    @VarunUllanat
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  9. removed small bugs in macos and windows tests

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  10. Update tests-windows.yml to remove run on error

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  11. Update tests-macos.yml to remove verbosity

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Commits on Mar 8, 2024

  1. fixed windows dask issue in test_slide_data.py

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  2. Merge branch 'dev_graph' of https://github.com/VarunUllanat/pathml in… 

    …to dev_graph
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  3. Update tests-windows.yml to use environment.yml

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  4. Merge pull request #426 from VarunUllanat/dev_graph 

    Adding windows and MacOS tests to dev_graph
    @VarunUllanat
    VarunUllanat authored Mar 8, 2024
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  5. Update workflow dispatch in tests-macos.yml

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  6. Update workflow dispatch in tests-windows.yml

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  7. Removed unused environment files in github workflows

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  8. make pre-commit compliant

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  9. make pre-commit compliant in conftest.py

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Commits on Mar 11, 2024

  1. Updated dockerfile

    Varun Ullanat authored and Varun Ullanat committed Mar 11, 2024
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  2. Update _version.py to 3.0.0

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  3. Update test_inference.py

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  4. Update and rename tests-conda.yml to tests-linux.yml

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Commits on Mar 13, 2024

  1. Added more references

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Commits on Mar 14, 2024

  1. Updated read-the-docs

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Commits on Mar 18, 2024

  1. Fixed small typos in example notebooks

    @VarunUllanat
    VarunUllanat committed Mar 18, 2024
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  2. Updated examples notebooks with references

    @VarunUllanat
    VarunUllanat committed Mar 18, 2024
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Commits on Mar 20, 2024

  1. Updated example notebooks and documentation order

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  2. Merge pull request #427 from Dana-Farber-AIOS/dev_graph 

    PathML 3.0.0: New Features and User Experience Improvements
    @VarunUllanat
    VarunUllanat authored Mar 20, 2024
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  3. Update README.md to change name of tests file

    @VarunUllanat
    VarunUllanat authored Mar 20, 2024
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Commits on Mar 21, 2024

  1. Updated inference API example

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    VarunUllanat committed Mar 21, 2024
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Commits on Mar 22, 2024

  1. Merge pull request #428 from Dana-Farber-AIOS/dev_graph 

    Small changes to example notebooks
    @VarunUllanat
    VarunUllanat authored Mar 22, 2024
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Commits on Apr 5, 2024

  1. docs/source/

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    VarunUllanat committed Apr 5, 2024
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  2. Added talk to pathml examples

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    VarunUllanat committed Apr 5, 2024
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  3. Added screenshots for talk to pathml

    @VarunUllanat
    VarunUllanat committed Apr 5, 2024
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  4. Merge pull request #430 from Dana-Farber-AIOS/dev_graph 

    Added 'talk to pathml' example notebook and images
    @VarunUllanat
    VarunUllanat authored Apr 5, 2024
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Commits on Apr 8, 2024

  1. Updated digital pathology assistant

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    VarunUllanat committed Apr 8, 2024
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  2. Merge pull request #432 from Dana-Farber-AIOS/dev_graph 

    Updated digital pathology assistant to include instructions and link
    @VarunUllanat
    VarunUllanat authored Apr 8, 2024
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Commits on May 17, 2024

  1. Added workflow for vectra slides

    @VarunUllanat
    VarunUllanat committed May 17, 2024
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  2. Updated mac install

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    VarunUllanat committed May 17, 2024
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Commits on May 20, 2024

  1. Edited macos tests

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    VarunUllanat committed May 20, 2024
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  2. Merge pull request #433 from Dana-Farber-AIOS/dev_graph 

    Added workflow for vectra slides
    @VarunUllanat
    VarunUllanat authored May 20, 2024
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  3. minor edits

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    VarunUllanat committed May 20, 2024
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  4. Merge pull request #434 from Dana-Farber-AIOS/dev_graph 

    minor edits
    @VarunUllanat
    VarunUllanat authored May 20, 2024
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Commits on Jul 8, 2024

  1. Minor edits to trigger tests

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    VarunUllanat committed Jul 8, 2024
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  2. Merge pull request #435 from Dana-Farber-AIOS/dev_graph 

    Minor edits to trigger tests
    @VarunUllanat
    VarunUllanat authored Jul 8, 2024
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Commits on Aug 15, 2024

  1. first attempt at adding micromamba to windows

    @jamesgwen
    jamesgwen committed Aug 15, 2024
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  2. replace conda info step with mamba info

    @jamesgwen
    jamesgwen committed Aug 15, 2024
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  3. testing changed linux file

    @jamesgwen
    jamesgwen committed Aug 15, 2024
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  4. fixing mamba command for linux file

    @jamesgwen
    jamesgwen committed Aug 15, 2024
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  5. getting rid of redundant job in linux file

    @jamesgwen
    jamesgwen committed Aug 15, 2024
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  6. changing reference envi file linux

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    jamesgwen committed Aug 15, 2024
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  7. first changes to mac test file

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    jamesgwen committed Aug 15, 2024
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  8. adjusting environment file for mac

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    jamesgwen committed Aug 15, 2024
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  9. trying java fix

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    jamesgwen committed Aug 15, 2024
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  10. trying pep517 to load python javabridge

    @jamesgwen
    jamesgwen committed Aug 15, 2024
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  11. adjusting setuptools depen

    @jamesgwen
    jamesgwen committed Aug 15, 2024
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  12. installing bioformats and javabridge sep

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    jamesgwen committed Aug 15, 2024
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  13. trying new way to install javabridge

    @jamesgwen
    jamesgwen committed Aug 15, 2024
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  14. trying adding numpy to pep517 statement

    @jamesgwen
    jamesgwen committed Aug 15, 2024
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  15. taking out initial java jobs

    @jamesgwen
    jamesgwen committed Aug 15, 2024
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  16. adding 3.9 and .10 to python

    @jamesgwen
    jamesgwen committed Aug 15, 2024
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  17. trying javabridge instead of python-javabridge

    @jamesgwen
    jamesgwen committed Aug 15, 2024
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  18. trying download of python-javabridge from git

    @jamesgwen
    jamesgwen committed Aug 15, 2024
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Commits on Aug 16, 2024

  1. adding javabridge back to main environment file

    @jamesgwen
    jamesgwen committed Aug 16, 2024
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  2. adding new readme

    @jamesgwen
    jamesgwen committed Aug 16, 2024
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  3. adjusting sections

    @jamesgwen
    jamesgwen committed Aug 16, 2024
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  4. adjusting links

    @jamesgwen
    jamesgwen committed Aug 16, 2024
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  5. trying to install numpy first

    @jamesgwen
    jamesgwen committed Aug 16, 2024
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  6. changing order in the environment file

    @jamesgwen
    jamesgwen committed Aug 16, 2024
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  7. reordering pip statements

    @jamesgwen
    jamesgwen committed Aug 16, 2024
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  8. taking bioformats and javabridge out of main environment file mac

    @jamesgwen
    jamesgwen committed Aug 16, 2024
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  9. trying to install javabridge from github

    @jamesgwen
    jamesgwen committed Aug 16, 2024
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  10. changing channel for javabridge

    @jamesgwen
    jamesgwen committed Aug 16, 2024
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  11. changing which packages are pulled from pip

    @jamesgwen
    jamesgwen committed Aug 16, 2024
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Commits on Aug 19, 2024

  1. adjusting test file macos

    @jamesgwen
    jamesgwen committed Aug 19, 2024
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  2. Merge pull request #436 from Dana-Farber-AIOS/dev-mamba 

    Converting to mamba
    @VarunUllanat
    VarunUllanat authored Aug 19, 2024
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Commits on Oct 25, 2024

  1. Update _version.py

    @VarunUllanat
    VarunUllanat authored Oct 25, 2024
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  2. Updated Bioformats url to 7.1.0

    @VarunUllanat
    VarunUllanat authored Oct 25, 2024
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Commits on Nov 1, 2024

  1. Merge branch 'master' into dev

    @VarunUllanat
    VarunUllanat authored Nov 1, 2024
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  2. Update _version.py to make lint compliant

    @VarunUllanat
    VarunUllanat authored Nov 1, 2024
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