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Add VEP annotations to the somatic SNVs #30

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NagaComBio opened this issue May 17, 2024 · 0 comments · May be fixed by #31

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NagaComBio commented May 17, 2024 •

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Feature Requirements:

Add VEP annotations to the SNV calls.
Parse transcripts with "HIGH" or "MODERATE" VEP consequences impact from the INFO column and add them to a new column with Gene, Consequences, Exon/Intron counts, HGVSc and HGVSp information.
Still to be decided:
- Should this be done for all variants?
- Should the VEP annotation be removed from the INFO column once it is parsed?

NagaComBio self-assigned this

NagaComBio changed the title ~~Add VEP annotations to high confidence somatic SNVs~~ Add VEP annotations to the somatic SNVs

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Add VEP annotation to all variants #31

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NagaComBio added the enhancement label

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