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Issues: DKFZ-ODCF/COWorkflowsBasePlugin

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10 Open 2 Closed
10 Open 2 Closed
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Issues list

throw error when several bam files match possibleTumorSampleNamePrefixes set
#29 opened Feb 19, 2019 by GWarsow
searchMergedBamsWithSeparator must be set explicitely when using exact sample name match for sample from file extraction. bug
#27 opened Jan 29, 2019 by dankwart-de
1
Hint for reworking the COMetadataAccessor
#24 opened Dec 4, 2018 by dankwart-de
Create isControlWorkflow / isNoControlWorkflow in a new tool script enhancement
#17 opened May 28, 2018 by dankwart-de
Move all plugins to depend on this version of the COWorkflows plugin
#10 opened Dec 20, 2017 by vinjana
1
Create a base workflow (or wrapper) which allows to use the cohort loading code in an easy way. enhancement
#8 opened Dec 11, 2017 by dankwart-de
Create a fastq base workflow for single and paired end processing enhancement
#7 opened Dec 11, 2017 by dankwart-de
1
Pull Fastq loading code to this plugin enhancement
#6 opened Dec 11, 2017 by dankwart-de
If the bam samples are passed via sample_list, also override possibleControl/TumorSampleName... enhancement
#5 opened Nov 7, 2017 by dankwart-de
1
If Bam files cannot be found, make a better log message enhancement
#3 opened Nov 6, 2017 by dankwart-de
1
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