diff --git a/docs/stages.md b/docs/stages.md index 2595702..d86f765 100644 --- a/docs/stages.md +++ b/docs/stages.md @@ -32,7 +32,8 @@ Quickly and accurately segments an optimally-aligned T1 and T2 pair with a deep 3. Registers the segmentation back into native T1 space using transform produced via optimal registration in preBIBSnet 4. Generates a mask of the segmentation from the native T1 space segmentation 5. Renames the native T1 space segmentation and mask to BIDS standard naming conventions to feed into Nibabies -6. Creates a "precomputed" directory for input into Nibabies, containing the final segmentation and mask along with the `dataset_description.file` +6. Creates a "bibsnet" derivatives directory for input into Nibabies, containing the final segmentation and mask along with the `dataset_description.file` +7. Removes prebibsnet through postbibsnet working directories if the user does not specify a working directory.