From 5f9852a0ea638c9b6f53c2f1922043ff62c69c6f Mon Sep 17 00:00:00 2001
From: thalassemia <cheah_sean@yahoo.com>
Date: Wed, 27 Nov 2024 18:25:42 -0800
Subject: [PATCH] Use nextflow to distribute Jenkins CI over Sherlock nodes

---
 runscripts/jenkins/configs/ecoli-anaerobic.json              | 5 +++--
 runscripts/jenkins/configs/ecoli-glucose-minimal.json        | 3 ++-
 runscripts/jenkins/configs/ecoli-new-gene-gfp.json           | 3 ++-
 runscripts/jenkins/configs/ecoli-no-growth-rate-control.json | 3 ++-
 runscripts/jenkins/configs/ecoli-no-operons.json             | 3 ++-
 runscripts/jenkins/configs/ecoli-superhelical-density.json   | 3 ++-
 runscripts/jenkins/configs/ecoli-with-aa.json                | 5 +++--
 7 files changed, 16 insertions(+), 9 deletions(-)

diff --git a/runscripts/jenkins/configs/ecoli-anaerobic.json b/runscripts/jenkins/configs/ecoli-anaerobic.json
index c7c08d066..ac022020c 100644
--- a/runscripts/jenkins/configs/ecoli-anaerobic.json
+++ b/runscripts/jenkins/configs/ecoli-anaerobic.json
@@ -19,6 +19,7 @@
         "single": {"mass_fraction_summary": {}}
     },
     "variants": {
-        "condition": {"condition": "no_oxygen"}
-    }
+        "condition": {"condition": {"value": ["no_oxygen"]}}
+    },
+    "sherlock": true
 }
diff --git a/runscripts/jenkins/configs/ecoli-glucose-minimal.json b/runscripts/jenkins/configs/ecoli-glucose-minimal.json
index a563012d9..602d1ad94 100644
--- a/runscripts/jenkins/configs/ecoli-glucose-minimal.json
+++ b/runscripts/jenkins/configs/ecoli-glucose-minimal.json
@@ -9,5 +9,6 @@
     },
     "analysis_options": {
         "single": {"mass_fraction_summary": {}}
-    }
+    },
+    "sherlock": true
 }
diff --git a/runscripts/jenkins/configs/ecoli-new-gene-gfp.json b/runscripts/jenkins/configs/ecoli-new-gene-gfp.json
index 87c4aeaf5..718be12ae 100644
--- a/runscripts/jenkins/configs/ecoli-new-gene-gfp.json
+++ b/runscripts/jenkins/configs/ecoli-new-gene-gfp.json
@@ -33,5 +33,6 @@
             },
             "op": "zip"
         }
-    }
+    },
+    "sherlock": true
 }
diff --git a/runscripts/jenkins/configs/ecoli-no-growth-rate-control.json b/runscripts/jenkins/configs/ecoli-no-growth-rate-control.json
index e5bf7737a..11d0dd36c 100644
--- a/runscripts/jenkins/configs/ecoli-no-growth-rate-control.json
+++ b/runscripts/jenkins/configs/ecoli-no-growth-rate-control.json
@@ -16,5 +16,6 @@
     },
     "analysis_options": {
         "single": {"mass_fraction_summary": {}}
-    }
+    },
+    "sherlock": true
 }
diff --git a/runscripts/jenkins/configs/ecoli-no-operons.json b/runscripts/jenkins/configs/ecoli-no-operons.json
index e29c32d4c..f15703de7 100644
--- a/runscripts/jenkins/configs/ecoli-no-operons.json
+++ b/runscripts/jenkins/configs/ecoli-no-operons.json
@@ -12,5 +12,6 @@
     },
     "analysis_options": {
         "single": {"mass_fraction_summary": {}}
-    }
+    },
+    "sherlock": true
 }
diff --git a/runscripts/jenkins/configs/ecoli-superhelical-density.json b/runscripts/jenkins/configs/ecoli-superhelical-density.json
index 60bd4f863..aa978436f 100644
--- a/runscripts/jenkins/configs/ecoli-superhelical-density.json
+++ b/runscripts/jenkins/configs/ecoli-superhelical-density.json
@@ -10,5 +10,6 @@
     },
     "analysis_options": {
         "single": {"mass_fraction_summary": {}}
-    }
+    },
+    "sherlock": true
 }
diff --git a/runscripts/jenkins/configs/ecoli-with-aa.json b/runscripts/jenkins/configs/ecoli-with-aa.json
index bc9fade2b..04b756a1f 100644
--- a/runscripts/jenkins/configs/ecoli-with-aa.json
+++ b/runscripts/jenkins/configs/ecoli-with-aa.json
@@ -11,6 +11,7 @@
         "single": {"mass_fraction_summary": {}}
     },
     "variants": {
-        "condition": {"condition": "with_aa"}
-    }
+        "condition": {"condition": {"value": ["with_aa"]}}
+    },
+    "sherlock": true
 }