From 107857f2832d5f05e1a61dd21665880b865e1f94 Mon Sep 17 00:00:00 2001
From: thalassemia <67928790+thalassemia@users.noreply.github.com>
Date: Tue, 21 May 2024 19:14:41 -0700
Subject: [PATCH] Fix PYTHONPATH for variant test

---
 scripts/create_variants.py | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/scripts/create_variants.py b/scripts/create_variants.py
index 42e8c9301..a4c55c4d5 100644
--- a/scripts/create_variants.py
+++ b/scripts/create_variants.py
@@ -188,7 +188,9 @@ def test_create_variants():
         # Create mock sim_data pickle
         with open("test_create_variants/kb/simData.cPickle", "wb") as f:
             pickle.dump(SimData(), f)
+        repo_dir = os.path.dirname(os.path.dirname(__file__))
         # Test script and config system
+        os.environ['PYTHONPATH'] = repo_dir
         subprocess.run(
             [
                 "python",
@@ -201,6 +203,7 @@ def test_create_variants():
                 "test_create_variants/out",
             ],
             check=True,
+            env=os.environ
         )
         # Check that metadata aligns with variant sim_data attrs
         with open("test_create_variants/out/metadata.json") as f: