pytest.yml

# Modified from GitHub Actions template

name: Pytest

# Improves reproducibility and speed
env:
  OPENBLAS_NUM_THREADS: 1

on:
  push:
    branches: [master]
  pull_request:
    branches: [master]

jobs:
  test:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ["3.11"]
    steps:
    - uses: actions/checkout@v2
    - name: Setup Python ${{ matrix.python-version }}
      uses: actions/setup-python@v2
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install dependencies
      run: |
        pip install --upgrade pip wheel
        pip install numpy
        pip install Cython
        pip install -r requirements.txt
    - name: Setup
      run: |
        python setup.py install
    - name: Compile Cython components
      run: |
        make clean compile
    - name: Test with pytest
      run: |
        python -m pytest --cov=ecoli --durations=0 -m 'not (noci or master)'