From 8a0b0ef86779720e7cc4ab45aa16214debbafb97 Mon Sep 17 00:00:00 2001
From: schmic05 <mscherer@mpi-inf.mpg.de>
Date: Thu, 9 Jan 2020 17:32:56 +0100
Subject: [PATCH] Fixed small bug in LOLA function

---
 R/LMC_interpretation.R | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/R/LMC_interpretation.R b/R/LMC_interpretation.R
index b3f1968..96f79b6 100644
--- a/R/LMC_interpretation.R
+++ b/R/LMC_interpretation.R
@@ -56,6 +56,11 @@ lmc.lola.enrichment <- function(medecom.result,
                                 assembly="hg19",
                                 lola.db=NULL){
   #require("RnBeads")
+  if(!requireNamespace("LOLA")){
+    if(!requireNamespace("BiocManager")) install.packages("BiocManager",repos="https://cloud.r-project.org/")
+    BiocManager::install("LOLA",dependencies=T)
+    if(!requireNamespace("simpleCache")) install.packages("simpleCache",repos="https://cloud.r-project.org/")
+  }
   require("LOLA")
   require("qvalue")
   rnb.mode <- F