From 8526687739a6802eeb08e97b27c20010225d5eb5 Mon Sep 17 00:00:00 2001 From: KerstenBreuer Date: Sun, 2 Aug 2020 20:18:19 +0200 Subject: [PATCH] update test --- CWL/workflows/CUTnRUN.cwl | 3 ++- tiny_test/test_main.chip.yml | 6 ------ 2 files changed, 2 insertions(+), 7 deletions(-) diff --git a/CWL/workflows/CUTnRUN.cwl b/CWL/workflows/CUTnRUN.cwl index 005ed9b..13f2c02 100644 --- a/CWL/workflows/CUTnRUN.cwl +++ b/CWL/workflows/CUTnRUN.cwl @@ -128,6 +128,7 @@ inputs: Q-value cutoff used for peak calling by MACS2. The default is 0.05. type: float + default: 0.05 broad_peaks: doc: | Determines whether the "--broad" flag @@ -400,4 +401,4 @@ outputs: outputSource: create_summary_qc_report/multiqc_zip multiqc_html: type: File - outputSource: create_summary_qc_report/multiqc_html \ No newline at end of file + outputSource: create_summary_qc_report/multiqc_html diff --git a/tiny_test/test_main.chip.yml b/tiny_test/test_main.chip.yml index bd602bc..bb674a1 100644 --- a/tiny_test/test_main.chip.yml +++ b/tiny_test/test_main.chip.yml @@ -16,12 +16,6 @@ genome: genome_spike_in: class: File path: ./ref_genome.fa -adapter1: - - "AGT" - - "AGT" -adapter2: - - null - - null is_paired_end: true fragment_size: null effective_genome_size: 199