diff --git a/docs/Manifest.toml b/docs/Manifest.toml index 59e4274c5..4a96a7a09 100644 --- a/docs/Manifest.toml +++ b/docs/Manifest.toml @@ -185,9 +185,9 @@ version = "0.2.2" [[deps.CUDA_Runtime_jll]] deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "bfe5a693a11522d58392f742243f2b50dc27afd6" +git-tree-sha1 = "178a606891f82b6d734f0eadd5336b7aad44d5df" uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" -version = "0.9.2+0" +version = "0.9.2+1" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -209,9 +209,9 @@ version = "1.16.0" [[deps.ClimaComms]] deps = ["CUDA", "MPI"] -git-tree-sha1 = "c551fb07ddc155fb7079a9d4f330c10d2f2a1502" +git-tree-sha1 = "88613e2098c9aaf134ac01a2139fac835661bd04" uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d" -version = "0.5.4" +version = "0.5.5" [[deps.ClimaCore]] deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"] @@ -229,7 +229,7 @@ version = "0.2.4" deps = ["CUDA", "ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] path = ".." uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" -version = "0.7.13" +version = "0.7.14" [[deps.CloseOpenIntervals]] deps = ["Static", "StaticArrayInterface"] @@ -370,9 +370,9 @@ version = "1.9.1" [[deps.DiffEqBase]] deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "22ab786efaef7b9ccb66a272d7cc2471bea76ba9" +git-tree-sha1 = "d5a64797f46c37ea59da9e4dcc86b208cb150182" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.130.4" +version = "6.133.0" [deps.DiffEqBase.extensions] DiffEqBaseDistributionsExt = "Distributions" @@ -422,12 +422,13 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "b6def76ffad15143924a2199f72a5cd883a2e8a9" +git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.9" -weakdeps = ["SparseArrays"] +version = "0.10.10" +weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" DistancesSparseArraysExt = "SparseArrays" [[deps.Distributed]] @@ -542,9 +543,9 @@ version = "3.3.10+0" [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "aa9925a229d45fe3018715238956766fa21804d1" +git-tree-sha1 = "9d77cb1caf03e67514ba60bcfc47c6e131b1950c" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.2.6" +version = "0.2.7" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -1110,9 +1111,9 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MarkdownAST]] deps = ["AbstractTrees", "Markdown"] -git-tree-sha1 = "e8513266815200c0c8f522d6d44ffb5e9b366ae4" +git-tree-sha1 = "465a70f0fc7d443a00dcdc3267a497397b8a3899" uuid = "d0879d2d-cac2-40c8-9cee-1863dc0c7391" -version = "0.1.1" +version = "0.1.2" [[deps.MbedTLS]] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] @@ -1246,9 +1247,9 @@ version = "10.42.0+0" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "528664265c9c36b3ecdb6d721d47aaab52ddf267" +git-tree-sha1 = "fcf8fd477bd7f33cb8dbb1243653fb0d415c256c" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.24" +version = "0.11.25" [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -1318,9 +1319,9 @@ version = "1.39.0" [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "c7dc9720390fcc296bf757b3f833f9e41c68a086" +git-tree-sha1 = "398f91235beaac50445557c937ecb0145d171842" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.7" +version = "0.7.8" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -1420,9 +1421,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" +git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.38.10" +version = "2.39.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1449,9 +1450,9 @@ version = "0.1.0" [[deps.RelocatableFolders]] deps = ["SHA", "Scratch"] -git-tree-sha1 = "90bc7a7c96410424509e4263e277e43250c05691" +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "1.0.0" +version = "1.0.1" [[deps.Requires]] deps = ["UUIDs"] @@ -1472,10 +1473,10 @@ uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" version = "0.4.0+0" [[deps.RootSolvers]] -deps = ["DocStringExtensions", "ForwardDiff"] -git-tree-sha1 = "bafbed2755bf8b1e42fd21f5bb417ff03e9cf1a1" +deps = ["ForwardDiff"] +git-tree-sha1 = "833d9914e748ca9329b762a82ec912897975f8d8" uuid = "7181ea78-2dcb-4de3-ab41-2b8ab5a31e74" -version = "0.4.0" +version = "0.4.1" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1494,14 +1495,20 @@ version = "0.1.0" [[deps.SciMLBase]] deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "e7c518184850701c91df0e898241c07e03c7f367" +git-tree-sha1 = "317f77cb31f7a0275cdd045aa7b3526ebc15c817" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.0.7" +version = "2.4.0" [deps.SciMLBase.extensions] - ZygoteExt = "Zygote" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" [deps.SciMLBase.weakdeps] + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLOperators]] @@ -1633,9 +1640,9 @@ version = "1.3.0" [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "f02eb61eb5c97b48c153861c72fbbfdddc607e06" +git-tree-sha1 = "664501f53a61885aa8f27e7526a3ab14ba85b53c" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.4.17" +version = "0.5.0" [[deps.StringEncodings]] deps = ["Libiconv_jll"] @@ -1733,9 +1740,9 @@ uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" version = "0.9.13" [[deps.Tricks]] -git-tree-sha1 = "aadb748be58b492045b4f56166b5188aa63ce549" +git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.7" +version = "0.1.8" [[deps.TriplotBase]] git-tree-sha1 = "4d4ed7f294cda19382ff7de4c137d24d16adc89b" diff --git a/perf/Manifest.toml b/perf/Manifest.toml index 6559cf794..511cf2fd4 100644 --- a/perf/Manifest.toml +++ b/perf/Manifest.toml @@ -175,9 +175,9 @@ version = "0.2.2" [[deps.CUDA_Runtime_jll]] deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "bfe5a693a11522d58392f742243f2b50dc27afd6" +git-tree-sha1 = "178a606891f82b6d734f0eadd5336b7aad44d5df" uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" -version = "0.9.2+0" +version = "0.9.2+1" [[deps.Cairo_jll]] deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] @@ -193,9 +193,9 @@ version = "1.16.0" [[deps.ClimaComms]] deps = ["CUDA", "MPI"] -git-tree-sha1 = "c551fb07ddc155fb7079a9d4f330c10d2f2a1502" +git-tree-sha1 = "88613e2098c9aaf134ac01a2139fac835661bd04" uuid = "3a4d1b5c-c61d-41fd-a00a-5873ba7a1b0d" -version = "0.5.4" +version = "0.5.5" [[deps.ClimaCore]] deps = ["Adapt", "BandedMatrices", "BlockArrays", "CUDA", "ClimaComms", "CubedSphere", "DataStructures", "DocStringExtensions", "ForwardDiff", "GaussQuadrature", "GilbertCurves", "HDF5", "InteractiveUtils", "IntervalSets", "LinearAlgebra", "PkgVersion", "RecursiveArrayTools", "Requires", "RootSolvers", "SparseArrays", "Static", "StaticArrays", "Statistics", "UnPack"] @@ -207,7 +207,7 @@ version = "0.10.52" deps = ["CUDA", "ClimaComms", "Colors", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "KernelAbstractions", "Krylov", "LinearAlgebra", "LinearOperators", "NVTX", "SciMLBase", "StaticArrays"] path = ".." uuid = "595c0a79-7f3d-439a-bc5a-b232dc3bde79" -version = "0.7.13" +version = "0.7.14" [[deps.CloseOpenIntervals]] deps = ["Static", "StaticArrayInterface"] @@ -217,9 +217,9 @@ version = "0.1.12" [[deps.CodeTracking]] deps = ["InteractiveUtils", "UUIDs"] -git-tree-sha1 = "a1296f0fe01a4c3f9bf0dc2934efbf4416f5db31" +git-tree-sha1 = "c0216e792f518b39b22212127d4a84dc31e4e386" uuid = "da1fd8a2-8d9e-5ec2-8556-3022fb5608a2" -version = "1.3.4" +version = "1.3.5" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] @@ -365,12 +365,13 @@ version = "1.15.1" [[deps.Distances]] deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "b6def76ffad15143924a2199f72a5cd883a2e8a9" +git-tree-sha1 = "5225c965635d8c21168e32a12954675e7bea1151" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.9" -weakdeps = ["SparseArrays"] +version = "0.10.10" +weakdeps = ["ChainRulesCore", "SparseArrays"] [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" DistancesSparseArraysExt = "SparseArrays" [[deps.Distributed]] @@ -423,9 +424,9 @@ version = "3.3.10+0" [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "aa9925a229d45fe3018715238956766fa21804d1" +git-tree-sha1 = "9d77cb1caf03e67514ba60bcfc47c6e131b1950c" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.2.6" +version = "0.2.7" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -675,9 +676,9 @@ version = "0.21.4" [[deps.JuliaInterpreter]] deps = ["CodeTracking", "InteractiveUtils", "Random", "UUIDs"] -git-tree-sha1 = "81dc6aefcbe7421bd62cb6ca0e700779330acff8" +git-tree-sha1 = "0592b1810613d1c95eeebcd22dc11fba186c2a57" uuid = "aa1ae85d-cabe-5617-a682-6adf51b2e16a" -version = "0.9.25" +version = "0.9.26" [[deps.JuliaNVTXCallbacks_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1056,9 +1057,9 @@ version = "0.3.3" [[deps.Polyester]] deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "c7dc9720390fcc296bf757b3f833f9e41c68a086" +git-tree-sha1 = "398f91235beaac50445557c937ecb0145d171842" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.7.7" +version = "0.7.8" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] @@ -1162,9 +1163,9 @@ version = "1.3.4" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" +git-tree-sha1 = "fa453b42ba1623bd2e70260bf44dac850a3430a7" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.38.10" +version = "2.39.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsMeasurementsExt = "Measurements" @@ -1196,10 +1197,10 @@ uuid = "295af30f-e4ad-537b-8983-00126c2a3abe" version = "3.5.6" [[deps.RootSolvers]] -deps = ["DocStringExtensions", "ForwardDiff"] -git-tree-sha1 = "bafbed2755bf8b1e42fd21f5bb417ff03e9cf1a1" +deps = ["ForwardDiff"] +git-tree-sha1 = "833d9914e748ca9329b762a82ec912897975f8d8" uuid = "7181ea78-2dcb-4de3-ab41-2b8ab5a31e74" -version = "0.4.0" +version = "0.4.1" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] @@ -1326,9 +1327,9 @@ version = "1.7.0" [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] -git-tree-sha1 = "f02eb61eb5c97b48c153861c72fbbfdddc607e06" +git-tree-sha1 = "664501f53a61885aa8f27e7526a3ab14ba85b53c" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.4.17" +version = "0.5.0" [[deps.StringManipulation]] deps = ["PrecompileTools"] @@ -1413,9 +1414,9 @@ uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" version = "0.9.13" [[deps.Tricks]] -git-tree-sha1 = "aadb748be58b492045b4f56166b5188aa63ce549" +git-tree-sha1 = "eae1bb484cd63b36999ee58be2de6c178105112f" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" -version = "0.1.7" +version = "0.1.8" [[deps.TruncatedStacktraces]] deps = ["InteractiveUtils", "MacroTools", "Preferences"]