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index.html
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---
layout: default
redirect_from: "/index.shtml"
---
<table border="0" cellpadding="5">
<tr>
<td align="center" style="text-align:center" width="40%">
<a href="./releases" title=
"Download CellProfiler Free Image Analysis Software">
<div class="boxed">
<img alt="Download CellProfiler free image analysis software"
border="0" height="120" src=
"http://d1zymp9ayga15t.cloudfront.net/images/cp_download_button.png">
</div></a>
</td>
<td align="left" width="10%">
</td>
<td align="center" width="40%">
<a href="./releases#CPA" title=
"Download CellProfiler Analyst Free Image Analyst Software">
<div class="boxed">
<img alt=
"Download CellProfiler Analyst free machine learning image analysis software"
border="0" height="120" src=
"http://d1zymp9ayga15t.cloudfront.net/images/cpa_download_button.png">
</div></a>
</td>
</tr>
<tr>
<td align="left" valign="top">
<b>CellProfiler</b> is free open-source software designed to enable
biologists without training in computer vision or programming to
quantitatively measure phenotypes from thousands of images
automatically. See our papers on analyzing <a href=
"http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1794559/">cell images</a> and
<a href="http://www.biotechniques.com/biotechniques/BiotechniquesJournal/2007/January/CellProfiler-free-versatile-software-for-automated-biological-image-analysis/biotechniques-40380.html">
non-cell images</a>.
<p>
</p>
</td>
<td>
</td>
<td align="left" valign="top">
<b>CellProfiler Analyst</b> is free open-source software for
exploring and analyzing large, high-dimensional image-derived data.
It includes machine learning tools for identifying complex and subtle
phenotypes. See our papers on <a href=
"http://www.biomedcentral.com/1471-2105/9/482">data visualization</a>
and <a href=
"http://www.pnas.org/content/106/6/1826.long">
machine learning</a>.
<p>
</p>
</td>
</tr>
<tr>
<td align="center">
<img alt="CellProfiler image" height="230" src=
"http://d1zymp9ayga15t.cloudfront.net/images/frontpage_bigfig_left.jpg">
</td>
<td align="center">
<img alt="arrow" height="25" src=
"http://d1zymp9ayga15t.cloudfront.net/images/arrow.jpg">
</td>
<td align="center">
<img alt=
"CellProfiler detects and analyses biological images free software"
height="230" src=
"http://d1zymp9ayga15t.cloudfront.net/images/frontpage_bigfig_right.jpg">
</td>
</tr>
</table>
<h3><center>
<a href=
"http://d1zymp9ayga15t.cloudfront.net/content/CellProfilerSoftwareBrochure.pdf"
title="CellProfiler Microscopy Biological Software">Brochure</a> about
CellProfiler and CellProfiler Analyst</center>
</h3>
<hr>
<p align="center" style="margin-top:25px; margin-bottom:25px">
<a href="http://www.facebook.com/CellProfiler"><img align="absmiddle"
border="0" src=
"http://d1zymp9ayga15t.cloudfront.net/images/Facebook_Badge_Xsmall.jpg"></a>
<a href="http://www.linkedin.com/groups/CellProfiler-4837622"><img align=
"absmiddle" border="0" src=
"http://d1zymp9ayga15t.cloudfront.net/images/linkedin-25.png"></a>
<a href="http://twitter.com/cellprofiler"><img align="absmiddle" border=
"0" src="http://d1zymp9ayga15t.cloudfront.net/images/twitter_logo.png"
width="25"></a>
</p>
<hr>
<p align="center" style="margin-top:25px">
Funding and support for the CellProfiler project has been provided
by:<br>
<br>
<a href="http://broadinstitute.org"><img src=
"http://d1zymp9ayga15t.cloudfront.net/images/BroadInstituteLogo.png"></a>
<a href="http://www.lilly.com"><img src=
"http://d1zymp9ayga15t.cloudfront.net/images/lilly.gif"></a>
<a href="http://www.nigms.nih.gov/"><img src=
"http://d1zymp9ayga15t.cloudfront.net/images/banner_nigms.gif"></a><br>
<a href="http://astrazeneca.com"><img src=
"http://d1zymp9ayga15t.cloudfront.net/images/AstraZeneca1.PNG"></a>
<a href="http://mit.edu"><img src=
"http://d1zymp9ayga15t.cloudfront.net/images/mit_logo.png"></a>
<a href="http://whitehead.mit.edu"><img src=
"http://d1zymp9ayga15t.cloudfront.net/images/whitehead-banner.gif"></a><br>
<a href="http://www.sbsonline.org"><img src=
"http://d1zymp9ayga15t.cloudfront.net/images/SBS.gif"></a> <a href=
"http://merck.com"><img src=
"http://d1zymp9ayga15t.cloudfront.net/images/logo_Merck_no_be_well.jpg"></a>
<a href="http://novartis.com"><img src=
"http://d1zymp9ayga15t.cloudfront.net/images/novartis-logo.gif"></a><br>
<a href="http://www.goldmanpartnerships.org/"><img src=
"http://d1zymp9ayga15t.cloudfront.net/images/goldman.gif"></a>
<a href="http://www.loreal.com/"><img src=
"http://d1zymp9ayga15t.cloudfront.net/images/loreal.png"></a> <a href=
"http://www.defense.gov"><img src=
"http://d1zymp9ayga15t.cloudfront.net/images/DeptOfDefense.png"></a>
</p>