post-merge-tests.yml

name: Post-merge Tests
on:
  workflow_dispatch:  # allow manual triggering of this workflow
    inputs:
      outgoing_ref:
        description: "The ref to be built. Can be a tag, commit hash, or branch name"
        required: true
        default: "main"
  push:
    # Run when the main branch is pushed to
    branches:
      - main
  # Run on pull requests when this file is modified
  pull_request:
    branches:
      - main
    paths:
      - .github/workflows/post-merge-tests.yml

env:
  PIP_EXTRA_INDEX_URL: https://pypi.anaconda.org/scientific-python-nightly-wheels/simple
  PIP_ONLY_BINARY: ":all:"

jobs:
  prerelease-cython:
    name: Pre-release Cython
    runs-on: ubuntu-22.04
    timeout-minutes: 60
    steps:
    - uses: actions/checkout@v4
      name: Checkout the repository
      with:
        submodules: recursive
    - name: Setup Python
      uses: actions/setup-python@v5
      with:
        python-version: 3.11
        architecture: x64
    - name: Install Apt dependencies
      run: |
        sudo apt update
        sudo apt install libboost-dev libopenblas-dev libhdf5-dev
    - name: Upgrade pip
      run: python3 -m pip install -U pip setuptools wheel
    - name: Install Python dependencies
      run: |
        python3 -m pip install ruamel.yaml scons numpy pandas pytest pint \
          pytest-xdist pytest-github-actions-annotate-failures graphviz
        python3 -m pip install --pre cython
    - name: Build Cantera
      run: python3 `which scons` build env_vars=all
        CXX=clang++-14 CC=clang-14 f90_interface=n extra_lib_dirs=/usr/lib/llvm/lib
        -j4 debug=n --debug=time logging=debug python_package=y
    - name: Build Tests
      run: python3 `which scons` -j4 build-tests
    - name: Run compiled tests
      run: python3 `which scons` test-gtest test-legacy --debug=time
    - name: Run Python tests
      run: python3 -m pytest -raP -v -n auto --durations=50 test/python
      env:
        LD_LIBRARY_PATH: "${LD_LIBRARY_PATH}:build/lib"
        PYTHONPATH: build/python

  ubuntu-docker:
    name: Docker 'ubuntu:${{ matrix.image }}' image
    strategy:
      matrix:
        image: [devel, rolling]
      fail-fast: false
    runs-on: ubuntu-latest
    timeout-minutes: 60
    container:
      image: ubuntu:${{ matrix.image }}
    steps:
    - name: Install git on ubuntu:${{ matrix.image }}
      run: |
        apt update -y
        apt install -y git
        git config --global init.defaultBranch main
        git config --global --add safe.directory /__w/cantera/cantera
    - uses: actions/checkout@v4
      name: Checkout the repository
      with:
        submodules: recursive
    - name: Install Apt dependencies
      # Use packages from ubuntu image when possible
      run: |
        apt install -y python3 python3-pip pipenv scons build-essential \
        libboost-dev gfortran libopenmpi-dev libpython3-dev \
        libblas-dev liblapack-dev libhdf5-dev libfmt-dev libyaml-cpp-dev \
        libgtest-dev libgmock-dev libeigen3-dev libsundials-dev \
        cython3 python3-numpy python3-pandas python3-pint python3-graphviz \
        python3-ruamel.yaml python3-setuptools python3-wheel python3-pytest \
        python3-pytest-xdist
        gcc --version
    - name: Install Python dependencies
      run: |
        pipenv install pytest-github-actions-annotate-failures
    - name: Build Cantera
      run: |
        scons build env_vars=all -j4 debug=n --debug=time \
        system_eigen=y system_fmt=y system_sundials=y system_yamlcpp=y \
        system_blas_lapack=y hdf_support=y f90_interface=y \
        cc_flags=-D_GLIBCXX_ASSERTIONS python_package=y
    - name: Build Tests
      run: scons -j4 build-tests
    - name: Run compiled tests
      run: scons test-gtest test-legacy --debug=time
    - name: Run Python tests
      run: python3 -m pytest -raP -v -n auto --durations=50 test/python
      env:
        LD_LIBRARY_PATH: "${LD_LIBRARY_PATH}:build/lib"
        PYTHONPATH: build/python

  fedora-docker:
    name: Docker 'fedora:${{ matrix.image }}' image
    strategy:
      matrix:
        image: [rawhide, latest]
      fail-fast: false
    runs-on: ubuntu-latest
    timeout-minutes: 60
    container:
      image: fedora:${{ matrix.image }}
    steps:
    - name: Install git on fedora:${{ matrix.image }}
      run: |
        dnf install -y git
        git config --global init.defaultBranch main
        git config --global --add safe.directory /__w/cantera/cantera
    - uses: actions/checkout@v4
      name: Checkout the repository
    - name: Install dependencies
      # Use packages from Fedora
      run: |
        dnf install -y boost-devel eigen3-devel fmt-devel gcc gcc-c++ \
        gcc-fortran gmock-devel gtest-devel python3 python3-cython \
        python3-devel python3-numpy python3-pandas python3-pint python3-pip \
        python3-pytest python3-pytest-xdist python3-ruamel-yaml python3-scipy \
        python3-scons python3-wheel sundials-devel yaml-cpp-devel hdf5-devel \
        highfive-devel python3-graphviz python3-packaging
    - name: Build Cantera
      run: |
        scons build -j4 debug=n --debug=time python_package=y f90_interface=y \
        extra_inc_dirs=/usr/include/eigen3 libdirname=/usr/lib64 \
        system_eigen=y system_fmt=y system_blas_lapack=y system_sundials=y \
        system_yamlcpp=y system_blas_lapack=y hdf_support=y
      # note: 'system_highfive=y' is omitted as the current packaged version is too old;
      # once newer version is available in 'latest', this should be tested as well
    - name: Build Tests
      run: scons -j4 build-tests
    - name: Run compiled tests
      run: scons test-gtest test-legacy --debug=time
    - name: Run Python tests
      run: python3 -m pytest -raP -v -n auto --durations=50 test/python
      env:
        LD_LIBRARY_PATH: build/lib
        PYTHONPATH: build/python

  ubuntu-python-prerelease:
    name: ${{ matrix.os }} with Python ${{ matrix.python-version }}
    runs-on: ${{ matrix.os }}
    timeout-minutes: 60
    strategy:
      matrix:
        python-version: ['3.13']
        os: ['ubuntu-22.04', 'ubuntu-24.04']
      fail-fast: false
    steps:
    - uses: actions/checkout@v4
      name: Checkout the repository
      with:
        submodules: recursive
    - name: Setup Python
      uses: actions/setup-python@v5
      with:
        python-version: ${{ matrix.python-version }}
        architecture: x64
        allow-prereleases: true
    - name: Install Apt dependencies
      run: |
        sudo apt update
        sudo apt install libboost-dev gfortran libopenmpi-dev \
        libblas-dev liblapack-dev libhdf5-dev libfmt-dev
        gcc --version
    - name: Upgrade pip
      run: python3 -m pip install -U pip setuptools wheel packaging
    - name: Install Python dependencies
      run: |
        python3 -m pip install ruamel.yaml scons pytest \
        pytest-xdist pytest-github-actions-annotate-failures pint graphviz
        python3 -m pip install --pre numpy cython pandas scipy
    - name: Build Cantera
      run: |
        python3 `which scons` build env_vars=all -j4 debug=n --debug=time \
        system_fmt=y system_blas_lapack=y hdf_support=y cc_flags=-D_GLIBCXX_ASSERTIONS \
        python_package=y
    - name: Build Tests
      run: python3 `which scons` -j4 build-tests
    - name: Run compiled tests
      run: python3 `which scons` test-gtest test-legacy --debug=time
    - name: Run Python tests
      run: python3 -m pytest -raP -v -n auto --durations=50 test/python
      env:
        LD_LIBRARY_PATH: "${LD_LIBRARY_PATH}:build/lib"
        PYTHONPATH: build/python

  macos-homebrew:
    runs-on: macos-14
    name: Install Latest Python with Homebrew
    timeout-minutes: 90
    steps:
    - uses: actions/checkout@v4
      name: Checkout the repository
      with:
        submodules: recursive
    # NumPy is installed here for the Python custom rate tests
    - name: Install Brew dependencies
      run: brew install --display-times boost libomp hdf5 python numpy
    - name: Set Include folder
      run: echo "BOOST_INC_DIR=$(brew --prefix)/include" >> $GITHUB_ENV
    # This is necessary because of PEP 668 https://peps.python.org/pep-0668/
    # PEP 668 prohibits installation to system Python packages via pip
    - name: Create a virtualenv for dependencies
      run: |
        $(brew --prefix)/bin/python3.12 -m venv .venv
    - name: Install Python dependencies
      # SCons must be installed into the virtualenv because packaging is a dependency
      # and we can't install packaging for the homebrew Python
      run: |
        ./.venv/bin/python -m pip install -U pip setuptools wheel build
        ./.venv/bin/python -m pip install ruamel.yaml numpy cython pandas pytest \
          pytest-xdist pytest-github-actions-annotate-failures pint graphviz \
          scons packaging
    - name: Build Cantera
      run: ./.venv/bin/scons build env_vars=all -j3 debug=n --debug=time boost_inc_dir=${BOOST_INC_DIR} python_package=y
    - name: Build Tests
      run: ./.venv/bin/scons -j3 build-tests
    - name: Run compiled tests
      run: ./.venv/bin/scons test-gtest test-legacy --debug=time
    - name: Run Python tests
      run: ./.venv/bin/python -m pytest -raP -v -n auto --durations=50 test/python
      env:
        DYLD_LIBRARY_PATH: "${DYLD_LIBRARY_PATH}:build/lib"
        PYTHONPATH: build/python