From 5ef4fbb6b5ed10b6d80a3c8f11aec8aff9af93a3 Mon Sep 17 00:00:00 2001 From: Holger Stitz Date: Thu, 3 Oct 2019 10:50:32 +0200 Subject: [PATCH 01/51] Switch to python_3.7 branches --- phovea_product.json | 34 +++++++++++++++++----------------- 1 file changed, 17 insertions(+), 17 deletions(-) diff --git a/phovea_product.json b/phovea_product.json index 98ba23c..538397b 100644 --- a/phovea_product.json +++ b/phovea_product.json @@ -17,18 +17,18 @@ { "name": "phovea_clue", "repo": "phovea/phovea_clue", - "branch": "develop" + "branch": "python_3.7" }, { "name": "phovea_security_flask", "repo": "phovea/phovea_security_flask", - "branch": "develop" + "branch": "python_3.7" }, { "name": "tdp_core", "repo": "datavisyn/tdp_core", - "branch": "develop" + "branch": "python_3.7" }, { "name": "ordino", @@ -43,22 +43,22 @@ { "name": "tdp_publicdb", "repo": "Caleydo/tdp_publicdb", - "branch": "develop" + "branch": "python_3.7" }, { "name": "tdp_uploaded_data", "repo": "datavisyn/tdp_uploaded_data", - "branch": "develop" + "branch": "python_3.7" }, { "name": "phovea_security_store_generated", "repo": "datavisyn/phovea_security_store_generated", - "branch": "develop" + "branch": "python_3.7" }, { "name": "tdp_matomo", "repo": "datavisyn/tdp_matomo", - "branch": "develop" + "branch": "python_3.7" } ] }, @@ -66,52 +66,52 @@ "type": "api", "label": "ordino_server", "repo": "phovea/phovea_server", - "branch": "develop", + "branch": "python_3.7", "additional": [ { "name": "phovea_security_flask", "repo": "phovea/phovea_security_flask", - "branch": "develop" + "branch": "python_3.7" }, { "name": "phovea_data_redis", "repo": "phovea/phovea_data_redis", - "branch": "develop" + "branch": "python_3.7" }, { "name": "phovea_data_mongo", "repo": "phovea/phovea_data_mongo", - "branch": "develop" + "branch": "python_3.7" }, { "name": "phovea_clue", "repo": "phovea/phovea_clue", - "branch": "develop" + "branch": "python_3.7" }, { "name": "tdp_core", "repo": "datavisyn/tdp_core", - "branch": "develop" + "branch": "python_3.7" }, { "name": "tdp_publicdb", "repo": "Caleydo/tdp_publicdb", - "branch": "develop" + "branch": "python_3.7" }, { "name": "tdp_uploaded_data", "repo": "datavisyn/tdp_uploaded_data", - "branch": "develop" + "branch": "python_3.7" }, { "name": "phovea_security_store_generated", "repo": "datavisyn/phovea_security_store_generated", - "branch": "develop" + "branch": "python_3.7" }, { "name": "tdp_matomo", "repo": "datavisyn/tdp_matomo", - "branch": "develop" + "branch": "python_3.7" } ] } From 3c058eeaefc1e3d93d055a9b45e0bb31f0daa35b Mon Sep 17 00:00:00 2001 From: Holger Stitz Date: Thu, 3 Oct 2019 14:40:32 +0200 Subject: [PATCH 02/51] Switch back to develop branches --- phovea_product.json | 53 ++++++++++++++++++++------------------------- 1 file changed, 24 insertions(+), 29 deletions(-) diff --git a/phovea_product.json b/phovea_product.json index 62dcc59..e22eff5 100644 --- a/phovea_product.json +++ b/phovea_product.json @@ -1,65 +1,63 @@ -[ - { +[{ "type": "web", "label": "ordino", "repo": "Caleydo/ordino_public", - "branch": "v5.4.0", + "branch": "develop", "additional": [{ "name": "phovea_core", "repo": "phovea/phovea_core", - "branch": "v2.2.0" + "branch": "develop" }, { "name": "phovea_ui", "repo": "phovea/phovea_ui", - "branch": "v2.1.3" + "branch": "develop" }, { "name": "phovea_clue", "repo": "phovea/phovea_clue", - "branch": "v2.3.0" + "branch": "develop" }, { "name": "phovea_security_flask", "repo": "phovea/phovea_security_flask", - "branch": "v2.3.0" + "branch": "develop" }, { "name": "tdp_core", "repo": "datavisyn/tdp_core", - "branch": "v5.5.0" + "branch": "develop" }, { "name": "ordino", "repo": "Caleydo/ordino", - "branch": "v5.2.0" + "branch": "develop" }, - { "name": "tdp_gene", "repo": "Caleydo/tdp_gene", - "branch": "v5.1.0" + "branch": "develop" }, { "name": "tdp_publicdb", "repo": "Caleydo/tdp_publicdb", - "branch": "v5.1.0" + "branch": "develop" }, { "name": "tdp_uploaded_data", "repo": "datavisyn/tdp_uploaded_data", - "branch": "v5.2.0" + "branch": "develop" }, { "name": "phovea_security_store_generated", "repo": "datavisyn/phovea_security_store_generated", - "branch": "v5.0.0" + "branch": "develop" }, { "name": "tdp_matomo", "repo": "datavisyn/tdp_matomo", - "branch": "v2.0.0" + "branch": "develop" } ] }, @@ -67,54 +65,51 @@ "type": "api", "label": "ordino_server", "repo": "phovea/phovea_server", - "branch": "v2.4.0", - "additional": [ - { + "branch": "develop", + "additional": [{ "name": "phovea_security_flask", "repo": "phovea/phovea_security_flask", - "branch": "v2.3.0" + "branch": "develop" }, { "name": "phovea_data_redis", "repo": "phovea/phovea_data_redis", - "branch": "v2.3.0" + "branch": "develop" }, { "name": "phovea_data_mongo", "repo": "phovea/phovea_data_mongo", - "branch": "v2.2.0" + "branch": "develop" }, { "name": "phovea_clue", "repo": "phovea/phovea_clue", - "branch": "v2.3.0" + "branch": "develop" }, - { "name": "tdp_core", "repo": "datavisyn/tdp_core", - "branch": "v5.5.0" + "branch": "develop" }, { "name": "tdp_publicdb", "repo": "Caleydo/tdp_publicdb", - "branch": "v5.1.0" + "branch": "develop" }, { "name": "tdp_uploaded_data", "repo": "datavisyn/tdp_uploaded_data", - "branch": "v5.2.0" + "branch": "develop" }, - { "name": "phovea_security_store_generated", "repo": "datavisyn/phovea_security_store_generated", - "branch": "v5.0.0" + "branch": "develop" }, { "name": "tdp_matomo", "repo": "datavisyn/tdp_matomo", - "branch": "v2.0.0" + "branch": "develop" } ] } From 5dd7d9d5bc64c7cbf54cd6f4bb4cb492985ee08c Mon Sep 17 00:00:00 2001 From: Holger Stitz Date: Thu, 3 Oct 2019 14:41:01 +0200 Subject: [PATCH 03/51] Prepare next dev release --- package-lock.json | 2 +- package.json | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/package-lock.json b/package-lock.json index 8a6dff2..95f7774 100644 --- a/package-lock.json +++ b/package-lock.json @@ -1,6 +1,6 @@ { "name": "ordino_product", - "version": "6.0.0", + "version": "6.0.1-SNAPSHOT", "lockfileVersion": 1, "requires": true, "dependencies": { diff --git a/package.json b/package.json index 73818be..2ad8e53 100644 --- a/package.json +++ b/package.json @@ -2,7 +2,7 @@ "name": "ordino_product", "description": "Analysis tool for cancer genomics to flexibly rank, filter and explore genes, cell lines and tissue samples.", "homepage": "https://phovea.caleydo.org", - "version": "6.0.0", + "version": "6.0.1-SNAPSHOT", "author": { "name": "datavisyn", "email": "contact@datavisyn.io", From ba7ff7d56f002b3d9673e4df613873dfc089f4c8 Mon Sep 17 00:00:00 2001 From: Holger Stitz Date: Thu, 3 Oct 2019 14:42:01 +0200 Subject: [PATCH 04/51] Use caleydo cluster in circleci config.yml --- .circleci/config.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.circleci/config.yml b/.circleci/config.yml index bd8afcf..69cff7c 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -79,14 +79,14 @@ jobs: tasksExists=$(aws --output text ecs list-task-definitions --family-prefix ${awsFamily}) echo "existsTaskDefinition? --${tasksExists}--" if [ ! -z "$tasksExists" ]; then - isTaskRunning=$(aws --output text ecs list-tasks --cluster ordino-public --family ${awsFamily}) + isTaskRunning=$(aws --output text ecs list-tasks --cluster caleydo --family ${awsFamily}) echo "isTaskRunning? --${isTaskRunning}--" if [ ! -z "$isTaskRunning" ]; then taskId=$(echo "${isTaskRunning}" | cut -f2) echo "taskId--${taskId}--" - aws --output text ecs stop-task --cluster ordino-public --task ${taskId} + aws --output text ecs stop-task --cluster caleydo --task ${taskId} fi - aws --output text ecs run-task --cluster ordino-public --task-definition ${awsFamily} --started-by CircleCIAutoUpdate + aws --output text ecs run-task --cluster caleydo --task-definition ${awsFamily} --started-by CircleCIAutoUpdate fi workflows: From d89df6dc0f75dd0d37321984eaa395997e69a763 Mon Sep 17 00:00:00 2001 From: Holger Stitz Date: Fri, 4 Oct 2019 09:26:38 +0200 Subject: [PATCH 05/51] Activate nightly build in circleci config --- .circleci/config.yml | 20 ++++++++++---------- 1 file changed, 10 insertions(+), 10 deletions(-) diff --git a/.circleci/config.yml b/.circleci/config.yml index 69cff7c..2c41816 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -91,16 +91,16 @@ jobs: workflows: version: 2 -# build-nightly: -# triggers: -# - schedule: # nightly build during weekday -# cron: "15 1 * * 1-5" -# filters: -# branches: -# only: -# - develop -# jobs: -# - build + build-nightly: + triggers: + - schedule: # nightly build during weekday + cron: "15 1 * * 1-5" + filters: + branches: + only: + - develop + jobs: + - build build-branch: jobs: - build: From 792aa08c91cb0569724d6935e9d10c6788abe594 Mon Sep 17 00:00:00 2001 From: Holger Stitz Date: Fri, 11 Oct 2019 09:25:13 +0200 Subject: [PATCH 06/51] Prepare next dev release --- package-lock.json | 2 +- package.json | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/package-lock.json b/package-lock.json index 95f7774..082b92e 100644 --- a/package-lock.json +++ b/package-lock.json @@ -1,6 +1,6 @@ { "name": "ordino_product", - "version": "6.0.1-SNAPSHOT", + "version": "6.0.2-SNAPSHOT", "lockfileVersion": 1, "requires": true, "dependencies": { diff --git a/package.json b/package.json index 2ad8e53..d506421 100644 --- a/package.json +++ b/package.json @@ -2,7 +2,7 @@ "name": "ordino_product", "description": "Analysis tool for cancer genomics to flexibly rank, filter and explore genes, cell lines and tissue samples.", "homepage": "https://phovea.caleydo.org", - "version": "6.0.1-SNAPSHOT", + "version": "6.0.2-SNAPSHOT", "author": { "name": "datavisyn", "email": "contact@datavisyn.io", From fe6aa884bfe3dab479720a327b66e26fd217170d Mon Sep 17 00:00:00 2001 From: Anita Steiner Date: Wed, 8 Jan 2020 13:20:24 +0100 Subject: [PATCH 07/51] Update config.yml --- .circleci/config.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.circleci/config.yml b/.circleci/config.yml index 2c41816..5f4bac2 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -3,7 +3,7 @@ jobs: build: working_directory: ~/phovea docker: - - image: caleydo/phovea_circleci_python:v2.0 + - image: circleci/python:3.7-buster-node-browsers # for node version see Dockerfile on https://hub.docker.com/r/circleci/python steps: - checkout - setup_remote_docker From b844aa225222f0378cc00251ada751238ad611c4 Mon Sep 17 00:00:00 2001 From: Anita Steiner Date: Wed, 8 Jan 2020 13:28:35 +0100 Subject: [PATCH 08/51] Update phovea_product.json --- phovea_product.json | 34 +++++++++++++++++----------------- 1 file changed, 17 insertions(+), 17 deletions(-) diff --git a/phovea_product.json b/phovea_product.json index 8cd0384..e22eff5 100644 --- a/phovea_product.json +++ b/phovea_product.json @@ -16,18 +16,18 @@ { "name": "phovea_clue", "repo": "phovea/phovea_clue", - "branch": "python_3.7" + "branch": "develop" }, { "name": "phovea_security_flask", "repo": "phovea/phovea_security_flask", - "branch": "python_3.7" + "branch": "develop" }, { "name": "tdp_core", "repo": "datavisyn/tdp_core", - "branch": "python_3.7" + "branch": "develop" }, { "name": "ordino", @@ -42,22 +42,22 @@ { "name": "tdp_publicdb", "repo": "Caleydo/tdp_publicdb", - "branch": "python_3.7" + "branch": "develop" }, { "name": "tdp_uploaded_data", "repo": "datavisyn/tdp_uploaded_data", - "branch": "python_3.7" + "branch": "develop" }, { "name": "phovea_security_store_generated", "repo": "datavisyn/phovea_security_store_generated", - "branch": "python_3.7" + "branch": "develop" }, { "name": "tdp_matomo", "repo": "datavisyn/tdp_matomo", - "branch": "python_3.7" + "branch": "develop" } ] }, @@ -65,51 +65,51 @@ "type": "api", "label": "ordino_server", "repo": "phovea/phovea_server", - "branch": "python_3.7", + "branch": "develop", "additional": [{ "name": "phovea_security_flask", "repo": "phovea/phovea_security_flask", - "branch": "python_3.7" + "branch": "develop" }, { "name": "phovea_data_redis", "repo": "phovea/phovea_data_redis", - "branch": "python_3.7" + "branch": "develop" }, { "name": "phovea_data_mongo", "repo": "phovea/phovea_data_mongo", - "branch": "python_3.7" + "branch": "develop" }, { "name": "phovea_clue", "repo": "phovea/phovea_clue", - "branch": "python_3.7" + "branch": "develop" }, { "name": "tdp_core", "repo": "datavisyn/tdp_core", - "branch": "python_3.7" + "branch": "develop" }, { "name": "tdp_publicdb", "repo": "Caleydo/tdp_publicdb", - "branch": "python_3.7" + "branch": "develop" }, { "name": "tdp_uploaded_data", "repo": "datavisyn/tdp_uploaded_data", - "branch": "python_3.7" + "branch": "develop" }, { "name": "phovea_security_store_generated", "repo": "datavisyn/phovea_security_store_generated", - "branch": "python_3.7" + "branch": "develop" }, { "name": "tdp_matomo", "repo": "datavisyn/tdp_matomo", - "branch": "python_3.7" + "branch": "develop" } ] } From 460c9cac7cf5cbe5b00c4cefdb253a26932ee0bd Mon Sep 17 00:00:00 2001 From: Anita Steiner Date: Wed, 8 Jan 2020 13:32:05 +0100 Subject: [PATCH 09/51] Update config.yml --- .circleci/config.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.circleci/config.yml b/.circleci/config.yml index 5f4bac2..1491a06 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -17,15 +17,15 @@ jobs: paths: - ./node_modules - restore_cache: - key: awscli-1.11.113 + key: awscli-1.16.312 - run: name: install-aws-cli command: | virtualenv ~/venv . ~/venv/bin/activate - pip install awscli==1.11.113 + pip install awscli==1.16.312 - save_cache: - key: awscli-1.11.113 + key: awscli-1.16.312 paths: - ~/venv - run: From 00441d0db3316f8fdebe8b80142b76a723e8f3e3 Mon Sep 17 00:00:00 2001 From: Anita Steiner Date: Tue, 14 Jan 2020 07:54:50 +0100 Subject: [PATCH 10/51] Update config.yml --- .circleci/config.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/.circleci/config.yml b/.circleci/config.yml index 1491a06..714a2c0 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -65,6 +65,7 @@ jobs: . ~/venv/bin/activate export AWS_DEFAULT_REGION=eu-central-1 baseName=${CIRCLE_PROJECT_REPONAME%_product} + echo "baseName --${baseName}--" # list repos filter to just the one of this product and delete untagged ones aws ecr describe-repositories --output text | cut -f5 | grep "caleydo/${baseName}" | while read line; do aws ecr list-images --repository-name $line --filter tagStatus=UNTAGGED --query 'imageIds[*]' --output text | while read imageId; do aws ecr batch-delete-image --output text --repository-name $line --image-ids imageDigest=$imageId; done; done - deploy: From 47b0905ba2c980e0bf0271681aef949110731931 Mon Sep 17 00:00:00 2001 From: Anita Steiner Date: Tue, 14 Jan 2020 08:21:38 +0100 Subject: [PATCH 11/51] Update config.yml --- .circleci/config.yml | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/.circleci/config.yml b/.circleci/config.yml index 714a2c0..668f069 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -65,9 +65,8 @@ jobs: . ~/venv/bin/activate export AWS_DEFAULT_REGION=eu-central-1 baseName=${CIRCLE_PROJECT_REPONAME%_product} - echo "baseName --${baseName}--" # list repos filter to just the one of this product and delete untagged ones - aws ecr describe-repositories --output text | cut -f5 | grep "caleydo/${baseName}" | while read line; do aws ecr list-images --repository-name $line --filter tagStatus=UNTAGGED --query 'imageIds[*]' --output text | while read imageId; do aws ecr batch-delete-image --output text --repository-name $line --image-ids imageDigest=$imageId; done; done + aws ecr describe-repositories --output text | cut -f6 | grep "caleydo/${baseName}" | while read line; do aws ecr list-images --repository-name $line --filter tagStatus=UNTAGGED --query 'imageIds[*]' --output text | while read imageId; do aws ecr batch-delete-image --output text --repository-name $line --image-ids imageDigest=$imageId; done; done - deploy: name: restart aws #assumes the task definition is called - command: | From 7feca4ca87a235ac643d533899abf231dfb31d04 Mon Sep 17 00:00:00 2001 From: dvvanessastoiber Date: Thu, 16 Jan 2020 07:29:52 +0100 Subject: [PATCH 12/51] remove _Jenkinsfile_ and _.travis,yml_ --- .travis.yml | 36 ------------------------------------ Jenkinsfile | 44 -------------------------------------------- 2 files changed, 80 deletions(-) delete mode 100644 .travis.yml delete mode 100644 Jenkinsfile diff --git a/.travis.yml b/.travis.yml deleted file mode 100644 index f9b94b0..0000000 --- a/.travis.yml +++ /dev/null @@ -1,36 +0,0 @@ -language: node_js - -node_js: -- 6 - -services: -- docker - -before_install: -- export DISPLAY=:99.0 -- sh -e /etc/init.d/xvfb start -- if [[ `npm -v` != 3* ]]; then npm i -g npm@3; fi - -before_script: -- pip install --user awscli -- export PATH=$PATH:$HOME/.local/bin - -# build and push -#- $(aws ecr get-login --region eu-central-1) -#script: node build.js --skipTests --skipSaveImage --pushTo=$AWS_ECR_PREFIX --pushLatest --pushDaily - -script: node build.js --skipSaveImage - -deploy: - provider: releases - api_key: - secure: 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 - file: build/* - on: - tags: true - -notifications: - slack: - secure: 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 - on_success: change - on_failure: always diff --git a/Jenkinsfile b/Jenkinsfile deleted file mode 100644 index a2d194a..0000000 --- a/Jenkinsfile +++ /dev/null @@ -1,44 +0,0 @@ -node { - stage('Checkout') { - checkout scm - } - - stage('Before Install') { - def nodeHome = tool 'node-v7' - env.PATH="${env.PATH}:${nodeHome}/bin" - def dockerHome = tool 'docker' - env.PATH="${env.PATH}:${dockerHome}/bin" - } - - stage('Install') { - sh 'node -v' - sh 'npm --version' - sh 'docker --version' - sh 'npm install' - } - - stage('Build') { - try { - withCredentials([usernameColonPassword(credentialsId: 'PHOVEA_GITHUB_CREDENTIALS', variable: 'PHOVEA_GITHUB_CREDENTIALS')]) { - docker.withRegistry("https://922145058410.dkr.ecr.eu-central-1.amazonaws.com", "ecr:eu-central-1:PHOVEA_AWS_CREDENTIALS") { - wrap([$class: 'Xvfb']) { - sh 'node build.js --skipTests --skipSaveImage --noDefaultTags --pushExtra=daily --pushTo=922145058410.dkr.ecr.eu-central-1.amazonaws.com/caleydo' - } - } - } - currentBuild.result = "SUCCESS" - } catch (e) { - // if any exception occurs, mark the build as failed - currentBuild.result = 'FAILURE' - throw e - } finally { - // always clean up - sh 'npm prune' - sh 'rm node_modules -rf' - } - } - - stage('Post Build') { - archiveArtifacts artifacts: 'build/*' - } -} From 3cd76b38756c660cf7c00bb0ede03c1fbdb780f1 Mon Sep 17 00:00:00 2001 From: dvvanessastoiber Date: Thu, 16 Jan 2020 07:30:29 +0100 Subject: [PATCH 13/51] add command to show installed npm dependencies --- .circleci/config.yml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/.circleci/config.yml b/.circleci/config.yml index 668f069..be4ccab 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -12,6 +12,9 @@ jobs: - run: name: install-npm-wee command: npm install + - run: + name: Show installed npm dependencies + command: npm list --depth=1 || true - save_cache: key: dependency-cache-{{ checksum "package.json" }} paths: From d84ea802f4357b0b10cc04bc7d9f4f8d26f35f9d Mon Sep 17 00:00:00 2001 From: dvvanessastoiber Date: Thu, 16 Jan 2020 07:30:54 +0100 Subject: [PATCH 14/51] use `destination` instead of removed `prefix` --- .circleci/config.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.circleci/config.yml b/.circleci/config.yml index be4ccab..12d2221 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -61,7 +61,7 @@ jobs: node build.js --serial --skipSaveImage --skipTests --noDefaultTags --pushExtra=${awsTag} --pushTo=922145058410.dkr.ecr.eu-central-1.amazonaws.com/caleydo - store_artifacts: path: build - prefix: build + destination: build - deploy: name: cleanup untagged aws repo command: | From 9a201071065fbb334ae7e06416fc27ae3778e303 Mon Sep 17 00:00:00 2001 From: dvvanessastoiber Date: Thu, 16 Jan 2020 07:33:12 +0100 Subject: [PATCH 15/51] update _build.js_ --- build.js | 706 +++++++++++++++++++++++++++++++++++++++---------------- 1 file changed, 507 insertions(+), 199 deletions(-) diff --git a/build.js b/build.js index fe4f9a5..23a93c5 100644 --- a/build.js +++ b/build.js @@ -7,19 +7,7 @@ const path = require('path'); const fs = Promise.promisifyAll(require('fs-extra')); const chalk = require('chalk'); const pkg = require('./package.json'); -/** - * arguments: - * * --quiet ... reduce log messages - * * --serial ... build elements sequentially - * * --skipTests - * * --useSSH - * * --skipCleanUp ... skip cleaning up old docker images - * * --skipSaveImage ... skip saving the generated docker images - * * --pushTo ... push docker images to the given registry - * * --noDefaultTags ... don't push generated default tag : - * * --pushExtra ... push additional custom tag: e.g., --pushExtra=develop - * * --forceLabel ... force to use the label even only a single service exists - */ +// see show help const argv = require('yargs-parser')(process.argv.slice(2)); const quiet = argv.quiet !== undefined; @@ -29,7 +17,43 @@ const prefix = (n) => n < 10 ? ('0' + n) : n.toString(); const buildId = `${now.getUTCFullYear()}${prefix(now.getUTCMonth())}${prefix(now.getUTCDate())}-${prefix(now.getUTCHours())}${prefix(now.getUTCMinutes())}${prefix(now.getUTCSeconds())}`; pkg.version = pkg.version.replace('SNAPSHOT', buildId); const env = Object.assign({}, process.env); +const productName = pkg.name.replace('_product', ''); + +function showHelp(steps, chain) { + console.info(`node build.js -- step1 step2 +possible options: + * --quiet ... reduce log messages + * --serial ... build elements sequentially + * --skipTests ... skip tests + * --injectVersion ... injects the product version into the package.json of the built component + * --useSSH ... clone via ssh instead of https + * --skipCleanUp ... skip cleaning up old docker images + * --skipSaveImage ... skip saving the generated docker images + * --pushTo ... push docker images to the given registry + * --noDefaultTags ... don't push generated default tag : + * --pushExtra ... push additional custom tag: e.g., --pushExtra=develop + * --forceLabel ... force to use the label even only a single service exists + * --dryRun ... just compute chain no execution + * --help ... show this help message + +arguments: (starting with --!) optional list of steps to execute in the given order (expert mode) by default the default chain is executed + `); + + steps = Object.keys(steps); + const primary = steps.filter((d) => !d.includes(':')).sort((a, b) => a.localeCompare(b)); + const secondary = steps.filter((d) => d.includes(':')).sort((a, b) => a.localeCompare(b)); + + console.info('possible primary steps:\n ', primary.join('\n ')); + console.info('possible secondary steps:\n ', secondary.join('\n ')); + + console.info('default chain:\n', JSON.stringify(chain, null, ' ')); +} +/** + * generates a repo url to clone depending on the argv.useSSH option + * @param {string} url the repo url either in git@ for https:// form + * @returns the clean repo url + */ function toRepoUrl(url) { if (url.startsWith('git@')) { if (argv.useSSH) { @@ -56,6 +80,10 @@ function toRepoUrl(url) { return `https://github.com/${url}.git`; } +/** + * guesses the credentials environment variable based on the given repository hostname + * @param {string} repo + */ function guessUserName(repo) { // extract the host const host = repo.match(/:\/\/([^/]+)/)[1]; @@ -87,6 +115,18 @@ function fromRepoUrl(url) { return url.slice(url.lastIndexOf('/') + 1); } +/** + * deep merge with array union + * @param {*} target + * @param {*} source + */ +function mergeWith(target, source) { + const _ = require('lodash'); + const mergeArrayUnion = (a, b) => Array.isArray(a) ? _.union(a, b) : undefined; + _.mergeWith(target, source, mergeArrayUnion); + return target; +} + function downloadDataUrl(url, dest) { if (!url.startsWith('http')) { url = `https://s3.eu-central-1.amazonaws.com/phovea-data-packages/${url}`; @@ -118,10 +158,11 @@ function downloadDataFile(desc, destDir, cwd) { url: desc }; } + desc.type = desc.type || (desc.url ? 'url' : (desc.repo ? 'repo' : 'unknown')); switch (desc.type) { case 'url': { - const destName = toDownloadName(desc.url); - return fs.ensureDirAsync(destDir).then(() => downloadDataUrl(desc.url, path.join(destDir, destName))); + desc.name = desc.name || toDownloadName(desc.url); + return fs.ensureDirAsync(destDir).then(() => downloadDataUrl(desc.url, `${destDir}/${desc.name}`)); } case 'repo': { desc.name = desc.name || fromRepoUrl(desc.repo); @@ -144,19 +185,31 @@ function downloadDataFile(desc, destDir, cwd) { * @param cmd command as array * @param args arguments * @param opts options + * @returns a promise with the result code or a reject with the error string */ function spawn(cmd, args, opts) { const spawn = require('child_process').spawn; const _ = require('lodash'); return new Promise((resolve, reject) => { - const p = spawn(cmd, typeof args === 'string' ? args.split(' ') : args, _.merge({stdio: ['ignore', 1, 2]}, opts)); + const p = spawn(cmd, typeof args === 'string' ? args.split(' ') : args, _.merge({stdio: argv.quiet ? ['ignore', 'pipe', 'pipe'] : ['ignore', 1, 2]}, opts)); + const out = []; + if (p.stdout) { + p.stdout.on('data', (chunk) => out.push(chunk)); + } + if (p.stderr) { + p.stderr.on('data', (chunk) => out.push(chunk)); + } p.on('close', (code, signal) => { if (code === 0) { console.info(cmd, 'ok status code', code, signal); resolve(code); } else { console.error(cmd, 'status code', code, signal); - reject(`${cmd} failed with status code ${code} ${signal}`); + if (args.quiet) { + // log output what has been captured + console.log(out.join('\n')); + } + reject(new Error(`${cmd} failed with status code ${code} ${signal}`)); } }); }); @@ -202,10 +255,7 @@ function dockerSave(image, target) { }); } -function dockerRemoveImages(productName) { - if (argv.skipCleanUp) { - return Promise.resolve(); - } +function dockerRemoveImages() { console.log(chalk.blue(`docker images | grep ${productName} | awk '{print $1":"$2}') | xargs --no-run-if-empty docker rmi`)); const spawn = require('child_process').spawn; const opts = {env}; @@ -240,17 +290,20 @@ function createQuietTerminalAdapter() { * runs yo internally * @param generator * @param options - * @param cwd + * @param {string} cwd + * @param {string[]|string} args */ -function yo(generator, options, cwd) { +function yo(generator, options, cwd, args) { const yeoman = require('yeoman-environment'); // call yo internally const yeomanEnv = yeoman.createEnv([], {cwd, env}, quiet ? createQuietTerminalAdapter() : undefined); - yeomanEnv.register(require.resolve('generator-phovea/generators/' + generator), 'phovea:' + generator); + const _args = Array.isArray(args) ? args.join(' ') : args || ''; return new Promise((resolve, reject) => { try { console.log(cwd, chalk.blue('running yo phovea:' + generator)); - yeomanEnv.run('phovea:' + generator, options, resolve); + yeomanEnv.lookup(() => { + yeomanEnv.run(`phovea:${generator} ${_args}`, options, resolve); + }); } catch (e) { console.error('error', e, e.stack); reject(e); @@ -264,17 +317,12 @@ function cloneRepo(p, cwd) { p.repo = p.repo || `phovea/${p.name}`; p.branch = p.branch || 'master'; - if (/^[0-9a-f]+$/gi.test(p.branch)) { - // clone a specific commit - console.log(cwd, chalk.blue(`running git clone -n ${toRepoUrl(p.repo)} ${p.name}`)); - return spawn('git', ['clone', '-n', toRepoUrlWithUser(p.repo), p.name], {cwd}).then(() => { - console.log(cwd, chalk.blue(`running git checkout ${p.branch}`)); - return spawn('git', ['checkout', p.branch], {cwd: cwd + '/' + p.name}); - }); - } else { - console.log(cwd, chalk.blue(`running git clone --depth 1 -b ${p.branch} ${toRepoUrl(p.repo)} ${p.name}`)); - return spawn('git', ['clone', '--depth', '1', '-b', p.branch, toRepoUrlWithUser(p.repo), p.name], {cwd}); - } + return yo('clone-repo', { + branch: p.branch, + extras: '--depth 1', + dir: p.name, + cwd + }, cwd, toRepoUrlWithUser(p.repo)); // pass repo url as argument } function resolvePluginType(p, dir) { @@ -289,23 +337,6 @@ function resolvePluginType(p, dir) { }); } -function preBuild(p, dir) { - const hasAdditional = p.additional.length > 0; - let act = fs.emptyDirAsync(dir) - .then(() => cloneRepo(p, dir)) - .then(() => resolvePluginType(p, dir)); - if (hasAdditional) { - if (argv.serial) { - p.additional.forEach((pi) => act = act.then(() => cloneRepo(pi, dir).then(resolvePluginType.bind(this, pi, dir)))); - } else { - act = act - .then(() => Promise.all(p.additional.map((pi) => cloneRepo(pi, dir).then(resolvePluginType.bind(this, pi, dir))))); - } - - } - return act; -} - function loadComposeFile(dir, p) { const composeFile = `${dir}/${p.name}/deploy/docker-compose.partial.yml`; if (fs.existsSync(composeFile)) { @@ -350,118 +381,64 @@ function patchDockerfile(p, dockerFile) { }); } -function postBuild(p, dir, buildInSubDir) { - return Promise.resolve(null) - .then(() => patchDockerfile(p, `${dir}${buildInSubDir ? '/' + p.name : ''}/deploy/Dockerfile`)) - .then(() => docker(`${dir}${buildInSubDir ? '/' + p.name : ''}`, `build -t ${p.image} -f deploy/Dockerfile .`)) - .then(() => !argv.pushExtra ? null : docker(`${dir}`, `tag ${p.image} ${p.image.substring(0, p.image.lastIndexOf(':'))}:${argv.pushExtra}`)) - .then(() => argv.skipSaveImage ? null : dockerSave(p.image, `build/${p.label}_image.tar.gz`)) - .then(() => Promise.all([loadComposeFile(dir, p).then(patchComposeFile.bind(null, p))].concat(p.additional.map((pi) => loadComposeFile(dir, pi))))) - .then(mergeCompose); -} - -function buildWebApp(p, dir, yoWorkspaceOptions) { - console.log(dir, chalk.blue('building web application:'), p.label); - const name = p.name; - const hasAdditional = p.additional.length > 0; - let act = preBuild(p, dir); - // let act = Promise.resolve(null); - if (hasAdditional) { - act = act - .then(() => yo('workspace', yoWorkspaceOptions, dir)) - .then(() => npm(dir, 'install')); - // test all modules - if (hasAdditional && !argv.skipTests) { - act = act.then(() => Promise.all(p.additional.map((pi) => npm(dir, `run test${pi.isHybridType ? ':web' : ''}:${pi.name}`)))); +function patchWorkspace(p) { + // prepend docker_script in the workspace + if (fs.existsSync('./docker_script.sh')) { + console.log('patch workspace and prepend docker_script.sh'); + let content = fs.readFileSync('./docker_script.sh').toString(); + if (fs.existsSync(p.tmpDir + '/docker_script.sh')) { + content += '\n' + fs.readFileSync(p.tmpDir + '/docker_script.sh').toString(); } - act = act - .then(() => npm(dir, `run dist${p.isHybridType ? ':web' : ''}:${p.name}`)); - } else { - act = act - .then(() => npm(dir + '/' + name, 'install')) - .then(() => npm(dir + '/' + name, `run dist${p.isHybridType ? ':web' : ''}`)); + fs.writeFileSync(p.tmpDir + '/docker_script.sh', content); } - return act - .then(() => fs.renameAsync(`${dir}/${p.name}/dist/${p.name}.tar.gz`, `./build/${p.label}.tar.gz`)) - .then(postBuild.bind(null, p, dir, true)); -} -function buildServerApp(p, dir, yoWorkspaceOptions) { - console.log(dir, chalk.blue('building service package:'), p.label); - const name = p.name; - - let act = preBuild(p, dir); - act = act - .then(() => yo('workspace', yoWorkspaceOptions, dir)); - - if (!argv.skipTests) { - act = act - .then(() => console.log(chalk.yellow('create test environment'))) - .then(() => spawn('pip', 'install --no-cache-dir -r requirements.txt', {cwd: dir})) - .then(() => spawn('pip', 'install --no-cache-dir -r requirements_dev.txt', {cwd: dir})); + if (argv.injectVersion) { + const pkgfile = `${p.tmpDir}/${p.name}/package.json`; + if (fs.existsSync(pkgfile)) { + const ppkg = require(pkgfile); + ppkg.version = pkg.version; + fs.writeJSONSync(pkgfile, ppkg); + } else { + console.warn('cannot inject version, main package.json not found'); + } } - act = act - .then(() => npm(dir + '/' + name, `run build${p.isHybridType ? ':python' : ''}`)) - .then(() => Promise.all(p.additional.map((pi) => npm(dir + '/' + pi.name, `run build${pi.isHybridType ? ':python' : ''}`)))); - - // copy all together - act = act - .then(() => fs.ensureDirAsync(`${dir}/build/source`)) - .then(() => fs.copyAsync(`${dir}/${name}/build/source`, `${dir}/build/source/`)) - .then(() => Promise.all(p.additional.map((pi) => fs.copyAsync(`${dir}/${pi.name}/build/source`, `${dir}/build/source/`)))); - - // copy data packages - act = act.then(() => Promise.all(p.data.map((d) => downloadDataFile(d, `${dir}/build/source/_data`, dir)))); - // let act = Promise.resolve([]); - - // copy main deploy thing and create a docker out of it - return act - .then(() => fs.ensureDirAsync(`${dir}/deploy`)) - .then(() => fs.copyAsync(`${dir}/${name}/deploy`, `${dir}/deploy/`)) - .then(postBuild.bind(null, p, dir, false)); -} - -function buildImpl(d, dir) { - const yoWorkspaceOptions = { - noAdditionals: true, - defaultApp: 'ordino_public', - wsName: pkg.name, - wsDescription: pkg.description, - wsVersion: pkg.version - }; + // inject extra phovea.js + if (fs.existsSync('./phovea.js')) { + console.log('patch workspace and add workspace phovea.js'); + let registry = fs.readFileSync(p.tmpDir + '/phovea_registry.js').toString(); + fs.copyFileSync('./phovea.js', p.tmpDir + '/phovea.js'); - switch (d.type) { - case 'static': - case 'web': - return buildWebApp(d, dir, yoWorkspaceOptions); - case 'api': - d.name = d.name || 'phovea_server'; - return buildServerApp(d, dir, yoWorkspaceOptions); - case 'service': - return buildServerApp(d, dir, yoWorkspaceOptions); - default: - console.error(chalk.red('unknown product type: ' + d.type)); - return Promise.resolve(null); + registry += `\n\n + import {register} from 'phovea_core/src/plugin'; + register('__product',require('./phovea.js')); + `; + fs.writeFileSync(p.tmpDir + '/phovea_registry.js', registry); } } -function mergeWith(target, source) { - const _ = require('lodash'); - const mergeArrayUnion = (a, b) => Array.isArray(a) ? _.union(a, b) : undefined; - _.mergeWith(target, source, mergeArrayUnion); - return target; -} - function mergeCompose(composePartials) { let dockerCompose = {}; composePartials.forEach((c) => mergeWith(dockerCompose, c)); return dockerCompose; } -function buildCompose(descs, dockerComposePatch, composePartials) { +function buildComposePartials(descs) { + const validDescs = descs.filter((d) => !d.error); + + // merge a big compose file including all + return Promise.all(validDescs.map((p) => { + return Promise.all([loadComposeFile(p.tmpDir, p).then(patchComposeFile.bind(null, p))].concat(p.additional.map((pi) => loadComposeFile(p.tmpDir, pi)))) + .then((partials) => { + p.composePartial = mergeCompose(partials); + }); + })); +} + +function buildCompose(descs, dockerComposePatch) { console.log('create docker-compose.yml'); - const dockerCompose = mergeCompose(composePartials); + + const dockerCompose = mergeCompose(descs.map((d) => d.composePartial).filter(Boolean)); const services = dockerCompose.services; // link the api server types to the web types and server to the api const web = descs.filter((d) => d.type === 'web').map((d) => d.label); @@ -525,10 +502,11 @@ function pushImages(images) { } function loadPatchFile() { - if (!fs.existsSync('./docker-compose-patch.yaml')) { + const existsYaml = fs.existsSync('./docker-compose-patch.yaml'); + if (!existsYaml && !fs.existsSync('./docker-compose-patch.yml')) { return {services: {}}; } - const content = fs.readFileSync('./docker-compose-patch.yaml'); + const content = fs.readFileSync(existsYaml ? './docker-compose-patch.yaml' : './docker-compose-patch.yml'); const yaml = require('yamljs'); const r = yaml.parse(content.toString()); if (!r.services) { @@ -537,6 +515,208 @@ function loadPatchFile() { return r; } +function fillDefaults(descs, dockerComposePatch) { + const singleService = descs.length === 1 && (argv.forceLabel === undefined); + + descs.forEach((d, i) => { + // default values + d.additional = d.additional || []; + d.data = d.data || []; + d.name = d.name || (d.repo ? fromRepoUrl(d.repo) : d.label); + d.label = d.label || d.name; + d.symlink = d.symlink || null; // default value + d.image = d.image || `${productName}${singleService ? '' : `/${d.label}`}:${pkg.version}`; + // incorporate patch file + if (dockerComposePatch.services[d.label] && dockerComposePatch.services[d.label].image) { + // use a different base image to build the item + d.baseImage = dockerComposePatch.services[d.label].image; + delete dockerComposePatch.services[d.label].image; + } + // include hint in the tmp directory which one is it + d.tmpDir = `./tmp${i}_${d.name.replace(/\s+/, '').slice(0, 5)}`; + }); + + return descs; +} + +function asChain(steps, chain) { + if (chain.length === 0) { + return []; + } + const possibleSteps = Object.keys(steps); + + const callable = (c) => { + if (typeof c === 'function') { + return c; + } + + if (typeof c === 'string') { + // simple lookup + if (!possibleSteps.includes(c)) { + console.error('invalid step:', c); + throw new Error('invalid step: ' + c); + } + return callable(steps[c]); + } + + if (Array.isArray(c)) { // sequential sub started + const sub = c.map(callable); + return () => { + console.log('run sequential sub chain: ', JSON.stringify(c, null, ' ')); + let step = Promise.resolve(); + for (const s of sub) { + step = step.then(s); + } + return step; + }; + } + // parallel = object + const sub = Object.keys(c).map((ci) => callable(c[ci])); + return () => { + console.log('run parallel sub chain: ', JSON.stringify(c, null, ' ')); + return Promise.all(sub.map((d) => d())); // run sub lazy combined with all + }; + }; + return chain.map(callable); +} + +function runChain(chain, catchErrors) { + let start = null; + let step = new Promise((resolve) => { + start = resolve; + }); + + for (const c of chain) { + step = step.then(c); + } + + step.catch(catchErrors); + + return () => { + start(); // resolve first to start chain + return step; // return last result + }; +} + +function strObject(items) { + const obj = {}; + for (const item of items) { + obj[item] = item; + } + return obj; +} + +function buildDockerImage(p) { + const buildInSubDir = p.type === 'web' || p.type === 'static'; + let buildArgs = ''; + // pass through http_proxy, no_proxy, and https_proxy env variables + for (const key of Object.keys(process.env)) { + const lkey = key.toLowerCase(); + if (lkey === 'http_proxy' || lkey === 'https_proxy' || lkey === 'no_proxy') { + // pass through + buildArgs += ` --build-arg ${lkey}='${process.env[key]}'`; + } + } + + // patch the docker file with the with an optional given baseImage + return Promise.resolve(patchDockerfile(p, `${p.tmpDir}${buildInSubDir ? '/' + p.name : ''}/deploy/Dockerfile`)) + // create the container image + .then(() => docker(`${p.tmpDir}${buildInSubDir ? '/' + p.name : ''}`, `build -t ${p.image}${buildArgs} -f deploy/Dockerfile .`)) + // tag the container image + .then(() => argv.pushExtra ? docker(`${p.tmpDir}`, `tag ${p.image} ${p.image.substring(0, p.image.lastIndexOf(':'))}:${argv.pushExtra}`) : null); +} + +function createWorkspace(p) { + return yo('workspace', {noAdditionals: true, defaultApp: 'phovea'}, p.tmpDir) + .then(() => patchWorkspace(p)); +} + +function installWebDependencies(p) { + return npm(p.additional.length > 0 ? p.tmpDir : (`${p.tmpDir}/${p.name}`), 'install'); +} + +function showWebDependencies(p) { + return npm(p.additional.length > 0 ? p.tmpDir : (`${p.tmpDir}/${p.name}`), 'list --depth=1'); +} + +function cleanUpWebDependencies(p) { + return fs.emptyDirAsync(p.additional.length > 0 ? `${p.tmpDir}/node_modules` : (`${p.tmpDir}/${p.name}/node_modules`)); +} + +function resolvePluginTypes(p) { + if (p.pluginType) { + return Promise.resolve(); // already resolved + } + if (p.additional.length === 0) { + return resolvePluginType(p, p.tmpDir); + } + return Promise.all([resolvePluginType(p, p.tmpDir)].concat(p.additional.map((pi) => resolvePluginType(pi, p.tmpDir)))); +} + +function testWebAdditionals(p) { + return Promise.all(p.additional.map((pi) => npm(p.tmpDir, `run test${pi.isHybridType ? ':web' : ''}:${pi.name}`))); +} + +function buildWeb(p) { + const hasAdditional = p.additional.length > 0; + + let step; + if (hasAdditional) { + step = npm(p.tmpDir, `run dist${p.isHybridType ? ':web' : ''}:${p.name}`); + } else { + step = npm(`${p.tmpDir}/${p.name}`, `run dist${p.isHybridType ? ':web' : ''}`); + } + // move to target directory + return step.then(() => fs.renameAsync(`${p.tmpDir}/${p.name}/dist/${p.name}.tar.gz`, `./build/${p.label}.tar.gz`)); +} + +function installPythonTestDependencies(p) { + console.log(chalk.yellow('create test environment')); + return spawn('pip', 'install --no-cache-dir -r requirements.txt', {cwd: p.tmpDir}) + .then(() => spawn('pip', 'install --no-cache-dir -r requirements_dev.txt', {cwd: p.tmpDir})); +} + +function showPythonTestDependencies(p) { + return spawn('pip', 'list', {cwd: p.tmpDir}); +} + +function buildServer(p) { + let act = npm(`${p.tmpDir}/${p.name}`, `run build${p.isHybridType ? ':python' : ''}`); + for (const pi of p.additional) { + act = act.then(() => npm(`${p.tmpDir}/${pi.name}`, `run build${pi.isHybridType ? ':python' : ''}`)); + } + + // copy all together + act = act + .then(() => fs.ensureDirAsync(`${p.tmpDir}/build/source`)) + .then(() => fs.copyAsync(`${p.tmpDir}/${p.name}/build/source`, `${p.tmpDir}/build/source/`)) + .then(() => Promise.all(p.additional.map((pi) => fs.copyAsync(`${p.tmpDir}/${pi.name}/build/source`, `${p.tmpDir}/build/source/`)))); + + // copy main deploy thing and create a docker out of it + act = act + .then(() => fs.ensureDirAsync(`${p.tmpDir}/deploy`)) + .then(() => fs.copyAsync(`${p.tmpDir}/${p.name}/deploy`, `${p.tmpDir}/deploy/`)); + + return act; +} + +function downloadServerDataFiles(p) { + if (!argv.serial) { + return Promise.all(p.data.map((d) => downloadDataFile(d, `${p.tmpDir}/build/source/_data`, p.tmpDir))); + } + // serial + let act = Promise.resolve(); + for (const d of p.data) { + act = act.then(() => downloadDataFile(d, `${p.tmpDir}/build/source/_data`, p.tmpDir)); + } + return act; +} + +function cleanWorkspace(descs) { + console.log(chalk.yellow('clean workspace')); + return Promise.all([fs.emptyDirAsync('build')].concat(descs.map((d) => fs.emptyDirAsync(d.tmpDir)))); +} + if (require.main === module) { if (argv.skipTests) { // if skipTest option is set, skip tests @@ -544,63 +724,191 @@ if (require.main === module) { env.PHOVEA_SKIP_TESTS = true; } if (argv.quiet) { - // if skipTest option is set, skip tests console.log(chalk.blue('will try to keep my mouth shut...')); } - const descs = require('./phovea_product.json'); const dockerComposePatch = loadPatchFile(); - const singleService = descs.length === 1 && (argv.forceLabel === undefined); - const productName = pkg.name.replace('_product', ''); - - fs.emptyDirAsync('build') - .then(dockerRemoveImages.bind(this, productName)) - // move my own .yo-rc.json to avoid a conflict - .then(fs.renameAsync('.yo-rc.json', '.yo-rc_tmp.json')) - .then(() => { - const buildOne = (d, i) => { - d.additional = d.additional || []; // default values - d.data = d.data || []; - d.name = d.name || fromRepoUrl(d.repo); - d.label = d.label || d.name; - if (dockerComposePatch.services[d.label] && dockerComposePatch.services[d.label].image) { - // use a different base image to build the item - d.baseImage = dockerComposePatch.services[d.label].image; - delete dockerComposePatch.services[d.label].image; - } - if (singleService) { - d.image = `${productName}:${pkg.version}`; - } else { - d.image = `${productName}/${d.label}:${pkg.version}`; - } - let wait = buildImpl(d, './tmp' + i); - wait.catch((error) => { - d.error = error; - console.error('ERROR building ', d, error); - }); - return wait; - }; - if (argv.serial) { - let r = Promise.resolve([]); - for (let i = 0; i < descs.length; ++i) { - r = r.then((arr) => buildOne(descs[i], i).then((f) => arr.concat(f))); - } - return r; - } - return Promise.all(descs.map(buildOne)); - }) - .then((composeFiles) => buildCompose(descs, dockerComposePatch, composeFiles.filter((d) => Boolean(d)))) - .then(() => pushImages(descs.filter((d) => !d.error).map((d) => d.image))) - .then(() => fs.renameAsync('.yo-rc_tmp.json', '.yo-rc.json')) - .then(() => { + const descs = fillDefaults(require('./phovea_product.json'), dockerComposePatch); + + if (fs.existsSync('.yo-rc.json')) { + fs.renameSync('.yo-rc.json', '.yo-rc_tmp.json'); + } + fs.ensureDirSync('build'); + + const cleanUp = () => { + if (fs.existsSync('.yo-rc_tmp.json')) { + fs.renameSync('.yo-rc_tmp.json', '.yo-rc.json'); + } + }; + + const catchProductBuild = (p, act) => { + // no chaining to keep error + act.catch((error) => { + p.error = error; + console.error('ERROR building ', p.name, error); + }); + return act; + }; + + const steps = { + clean: () => cleanWorkspace(descs), + prune: dockerRemoveImages, + compose: () => buildComposePartials(descs).then(() => buildCompose(descs, dockerComposePatch)), + push: () => pushImages(descs.filter((d) => !d.error).map((d) => d.image)), + summary: () => { console.log(chalk.bold('summary: ')); const maxLength = Math.max(...descs.map((d) => d.name.length)); descs.forEach((d) => console.log(` ${d.name}${'.'.repeat(3 + (maxLength - d.name.length))}` + (d.error ? chalk.red('ERROR') : chalk.green('SUCCESS')))); const anyErrors = descs.some((d) => d.error); + cleanUp(); if (anyErrors) { process.exit(1); } - }).catch((error) => { - console.error('ERROR extra building ', error); - process.exit(1); + } + }; + + const webTypes = ['static', 'web']; + const serverTypes = ['api', 'service']; + + const chainProducts = []; + for (let i = 0; i < descs.length; ++i) { + const p = descs[i]; + const suffix = p.name; + const hasAdditional = p.additional.length > 0; + const isWeb = webTypes.includes(p.type); + const isServer = serverTypes.includes(p.type); + + if (!isWeb && !isServer) { + console.error(chalk.red('unknown product type: ' + p.type)); + continue; + } + + fs.ensureDirSync(p.tmpDir); + + // clone repo + const subSteps = []; + steps[`clone:${suffix}`] = () => catchProductBuild(p, cloneRepo(p, p.tmpDir)); + subSteps.push(`clone:${suffix}`); + + if (hasAdditional) { + // clone extras + const cloneKeys = []; + for (const pi of p.additional) { + const key = `clone:${suffix}:${pi.name}`; + steps[key] = () => catchProductBuild(p, cloneRepo(pi, p.tmpDir)); + cloneKeys.push(key); + } + + if (argv.serial) { + subSteps.push(...cloneKeys); + } else { + subSteps.push(strObject(cloneKeys)); + } + } + + const needsWorskpace = (isWeb && hasAdditional) || isServer; + if(needsWorskpace) { + steps[`prepare:${suffix}`] = () => catchProductBuild(p, createWorkspace(p)); + } + + if (isWeb) { + steps[`install:${suffix}`] = () => catchProductBuild(p, installWebDependencies(p)); + steps[`show:${suffix}`] = () => catchProductBuild(p, showWebDependencies(p)); + } else { // server + steps[`install:${suffix}`] = argv.skipTests ? () => null : () => catchProductBuild(p, installPythonTestDependencies(p)); + steps[`show:${suffix}`] = () => catchProductBuild(p, showPythonTestDependencies(p)); + } + steps[`test:${suffix}`] = isWeb && hasAdditional ? () => catchProductBuild(p, resolvePluginTypes(p).then(() => testWebAdditionals(p))) : () => null; + steps[`build:${suffix}`] = isWeb ? () => catchProductBuild(p, resolvePluginTypes(p).then(() => buildWeb(p))) : () => catchProductBuild(p, resolvePluginTypes(p).then(() => buildServer(p))); + steps[`data:${suffix}`] = () => catchProductBuild(p, downloadServerDataFiles(p)); + steps[`postbuild:${suffix}`] = isWeb ? () => catchProductBuild(p, cleanUpWebDependencies(p)) : () => null; + steps[`image:${suffix}`] = () => catchProductBuild(p, buildDockerImage(p)); + steps[`save:${suffix}`] = () => catchProductBuild(p, dockerSave(p.image, `build/${p.label}_image.tar.gz`)); + + if(needsWorskpace) { + subSteps.push(`prepare:${suffix}`); + } + + subSteps.push(`install:${suffix}`); + subSteps.push(`show:${suffix}`); + + if (!argv.skipTests) { + subSteps.push(`test:${suffix}`); + } + subSteps.push(`build:${suffix}`); + if (isServer && p.data.length > 0) { + subSteps.push(`data:${suffix}`); + } + if (isWeb) { + subSteps.push(`postbuild:${suffix}`); + } + subSteps.push(`image:${suffix}`); + if (!argv.skipSaveImage) { + subSteps.push(`save:${suffix}`); + } + + steps[`product:${suffix}`] = subSteps; + subSteps.name = `product:${suffix}`; + chainProducts.push(subSteps); + } + + // create some meta steps + { + const stepNames = Object.keys(steps); + for (const meta of ['clone', 'prepare', 'build', 'test', 'postbuild', 'image', 'product', 'install', 'show']) { + const sub = stepNames.filter((d) => d.startsWith(`${meta}:`)); + if (sub.length <= 0) { + continue; + } + steps[meta] = argv.serial ? sub : strObject(sub); + } + } + + const chain = ['clean']; + + if (!argv.skipCleanUp) { + chain.push('prune'); + } + + if (argv.serial) { + chain.push(...chainProducts); // serially + } else { + const par = {}; + chainProducts.forEach((c) => { + par[c.name] = c; }); + chain.push(par); // as object = parallel + } + // result of the promise is an array of partial docker compose files + + chain.push('compose'); + if (argv.pushTo) { + chain.push('push'); + } + chain.push('summary'); + + // XX. catch all error handling + const catchErrors = (error) => { + console.error('ERROR extra building ', error); + // rename back + cleanUp(); + process.exit(1); + }; + + if (argv.help) { + showHelp(steps, chain); + cleanUp(); + process.exit(0); + } + + if (argv._.length > 0) { + // explicit chain replace computed one + chain.splice(0, chain.length, ...argv._); + } + + console.log(chalk.blue('executing chain:'), JSON.stringify(chain, null, ' ')); + const toExecute = asChain(steps, chain); + const launch = runChain(toExecute, catchErrors); + if (!argv.dryRun) { + launch(); + } } From b5e75163da8ae77e070f8ce485992f57caf96707 Mon Sep 17 00:00:00 2001 From: dvvanessastoiber Date: Thu, 16 Jan 2020 07:53:40 +0100 Subject: [PATCH 16/51] replace `/` in branchName with underscore --- .circleci/config.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.circleci/config.yml b/.circleci/config.yml index 12d2221..7f4325d 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -54,7 +54,7 @@ jobs: awsTag="latest" ;; *) - awsTag="${CIRCLE_BRANCH}${CIRCLE_TAG}" + awsTag="${CIRCLE_BRANCH//\//_}${CIRCLE_TAG}" # replace `/` with `_` in branch name ;; esac echo "using tag: --${awsTag}--" @@ -77,7 +77,7 @@ jobs: export AWS_DEFAULT_REGION=eu-central-1 # cleanup name by removing the _product suffix baseName=${CIRCLE_PROJECT_REPONAME%_product} - awsFamily="${baseName}-${CIRCLE_BRANCH}" + awsFamily="${baseName}-${CIRCLE_BRANCH//\//_}" # replace `/` with `_` in branch name echo "awsFamily --${awsFamily}--" tasksExists=$(aws --output text ecs list-task-definitions --family-prefix ${awsFamily}) echo "existsTaskDefinition? --${tasksExists}--" From ba7cc8d33f7af1016aa4136e217e21fa16339bb2 Mon Sep 17 00:00:00 2001 From: dvvanessastoiber Date: Thu, 16 Jan 2020 08:37:03 +0100 Subject: [PATCH 17/51] update dependencies --- package.json | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/package.json b/package.json index d506421..4633058 100644 --- a/package.json +++ b/package.json @@ -25,11 +25,11 @@ "bluebird": "3.4.6", "chalk": "1.1.3", "fs-extra": "^1.0.0", - "generator-phovea": "github:phovea/generator-phovea#88ad91dd288d25e0b0b34101d46656bc3c623fd3", - "lodash": "^4.17.14", + "generator-phovea": "github:phovea/generator-phovea#develop", + "lodash": "4.17.14", "mkdirp": "0.5.1", "yamljs": "0.2.8", "yargs-parser": "4.2.0", - "yeoman-environment": "1.6.6" + "yeoman-environment": "2.7.0" } } From 425503b7bdb6e0bda31c6b617d0d369d7ee7a530 Mon Sep 17 00:00:00 2001 From: rumersdorfer <45141967+rumersdorfer@users.noreply.github.com> Date: Wed, 29 Jan 2020 15:30:31 +0100 Subject: [PATCH 18/51] add CODEOWNERS file --- .github/CODEOWNERS | 1 + 1 file changed, 1 insertion(+) create mode 100644 .github/CODEOWNERS diff --git a/.github/CODEOWNERS b/.github/CODEOWNERS new file mode 100644 index 0000000..9836a90 --- /dev/null +++ b/.github/CODEOWNERS @@ -0,0 +1 @@ +* @thinkh From f270e72ad7334203ecedcd608e81a4c0ec1147ed Mon Sep 17 00:00:00 2001 From: Holger Stitz Date: Wed, 29 Jan 2020 17:12:40 +0100 Subject: [PATCH 19/51] Ignore errors from `npm ls` and `pip list` `npm ls` fails if some peerDependencies are not installed Since `showWebDependencies()` function is for debug purposes only, we catch possible promise reject of `npm()` and convert it into Promise.resolve() that it always succeeds. We do something similar in the CircleCI config with the `true` in `npm list --depth=1 || true`. Since `showPythonTestDependencies()` is for debug purposes only, we catch possible errors and resolve it with status code `0`. --- build.js | 16 ++++++++++------ 1 file changed, 10 insertions(+), 6 deletions(-) diff --git a/build.js b/build.js index 23a93c5..60392c4 100644 --- a/build.js +++ b/build.js @@ -636,7 +636,10 @@ function installWebDependencies(p) { } function showWebDependencies(p) { - return npm(p.additional.length > 0 ? p.tmpDir : (`${p.tmpDir}/${p.name}`), 'list --depth=1'); + // `npm ls` fails if some peerDependencies are not installed + // since this function is for debug purposes only, we catch possible errors of `npm()` and resolve it with status code `0`. + return npm(p.additional.length > 0 ? p.tmpDir : (`${p.tmpDir}/${p.name}`), 'list --depth=1') + .catch(() => Promise.resolve(0)) // status code = 0 } function cleanUpWebDependencies(p) { @@ -677,7 +680,9 @@ function installPythonTestDependencies(p) { } function showPythonTestDependencies(p) { - return spawn('pip', 'list', {cwd: p.tmpDir}); + // since this function is for debug purposes only, we catch possible errors and resolve it with status code `0`. + return spawn('pip', 'list', {cwd: p.tmpDir}) + .catch(() => Promise.resolve(0)) // status code = 0 } function buildServer(p) { @@ -805,8 +810,8 @@ if (require.main === module) { } } - const needsWorskpace = (isWeb && hasAdditional) || isServer; - if(needsWorskpace) { + const needsWorkspace = (isWeb && hasAdditional) || isServer; + if(needsWorkspace) { steps[`prepare:${suffix}`] = () => catchProductBuild(p, createWorkspace(p)); } @@ -824,10 +829,9 @@ if (require.main === module) { steps[`image:${suffix}`] = () => catchProductBuild(p, buildDockerImage(p)); steps[`save:${suffix}`] = () => catchProductBuild(p, dockerSave(p.image, `build/${p.label}_image.tar.gz`)); - if(needsWorskpace) { + if(needsWorkspace) { subSteps.push(`prepare:${suffix}`); } - subSteps.push(`install:${suffix}`); subSteps.push(`show:${suffix}`); From 484176115339f663187933ff4feb8eac32bcc8a4 Mon Sep 17 00:00:00 2001 From: Holger Stitz Date: Wed, 29 Jan 2020 17:15:20 +0100 Subject: [PATCH 20/51] Remove `--skipTests` in CircleCI config.yml --- .circleci/config.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.circleci/config.yml b/.circleci/config.yml index 7f4325d..bffbcf6 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -58,7 +58,7 @@ jobs: ;; esac echo "using tag: --${awsTag}--" - node build.js --serial --skipSaveImage --skipTests --noDefaultTags --pushExtra=${awsTag} --pushTo=922145058410.dkr.ecr.eu-central-1.amazonaws.com/caleydo + node build.js --serial --skipSaveImage --noDefaultTags --pushExtra=${awsTag} --pushTo=922145058410.dkr.ecr.eu-central-1.amazonaws.com/caleydo - store_artifacts: path: build destination: build From dd040e09424bada9ef75347af14f9cd836917293 Mon Sep 17 00:00:00 2001 From: Holger Stitz Date: Wed, 29 Jan 2020 17:23:00 +0100 Subject: [PATCH 21/51] Remove `--serial` flag to activate parallel builds --- .circleci/config.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.circleci/config.yml b/.circleci/config.yml index bffbcf6..349a5c7 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -58,7 +58,7 @@ jobs: ;; esac echo "using tag: --${awsTag}--" - node build.js --serial --skipSaveImage --noDefaultTags --pushExtra=${awsTag} --pushTo=922145058410.dkr.ecr.eu-central-1.amazonaws.com/caleydo + node build.js --skipSaveImage --noDefaultTags --pushExtra=${awsTag} --pushTo=922145058410.dkr.ecr.eu-central-1.amazonaws.com/caleydo - store_artifacts: path: build destination: build From 17ca2cb39848aefa3f3c359b680191c0b4e28511 Mon Sep 17 00:00:00 2001 From: Holger Stitz Date: Wed, 29 Jan 2020 17:24:02 +0100 Subject: [PATCH 22/51] Add `--skipTests` flag again to pass build At the moment the CircleCI build is killed, when testing with karma. It looks like our code or test command is not compatible with the CircleCI environment. --- .circleci/config.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.circleci/config.yml b/.circleci/config.yml index 349a5c7..69dc702 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -58,7 +58,7 @@ jobs: ;; esac echo "using tag: --${awsTag}--" - node build.js --skipSaveImage --noDefaultTags --pushExtra=${awsTag} --pushTo=922145058410.dkr.ecr.eu-central-1.amazonaws.com/caleydo + node build.js --skipSaveImage --skipTests --noDefaultTags --pushExtra=${awsTag} --pushTo=922145058410.dkr.ecr.eu-central-1.amazonaws.com/caleydo - store_artifacts: path: build destination: build From c341ae2714e177d83f5ad5297f56b5b89b7404e9 Mon Sep 17 00:00:00 2001 From: Holger Stitz Date: Wed, 4 Mar 2020 12:33:20 +0100 Subject: [PATCH 23/51] Add tourdino to develop build --- phovea_product.json | 9 +++++++-- 1 file changed, 7 insertions(+), 2 deletions(-) diff --git a/phovea_product.json b/phovea_product.json index e22eff5..56246ea 100644 --- a/phovea_product.json +++ b/phovea_product.json @@ -27,7 +27,7 @@ { "name": "tdp_core", "repo": "datavisyn/tdp_core", - "branch": "develop" + "branch": "ochampari/10_tourdino-lineup-panel-button" }, { "name": "ordino", @@ -58,6 +58,11 @@ "name": "tdp_matomo", "repo": "datavisyn/tdp_matomo", "branch": "develop" + }, + { + "name": "tourdino", + "repo": "Caleydo/tourdino", + "branch": "develop" } ] }, @@ -89,7 +94,7 @@ { "name": "tdp_core", "repo": "datavisyn/tdp_core", - "branch": "develop" + "branch": "ochampari/10_tourdino-lineup-panel-button" }, { "name": "tdp_publicdb", From 1eafa358c7707de4c1b50b87fb3ae8e7f5d5e2fd Mon Sep 17 00:00:00 2001 From: Holger Stitz Date: Wed, 4 Mar 2020 15:23:11 +0100 Subject: [PATCH 24/51] Add `injectionVersion` flag in CircleCI config --- .circleci/config.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.circleci/config.yml b/.circleci/config.yml index 69dc702..676549f 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -58,7 +58,7 @@ jobs: ;; esac echo "using tag: --${awsTag}--" - node build.js --skipSaveImage --skipTests --noDefaultTags --pushExtra=${awsTag} --pushTo=922145058410.dkr.ecr.eu-central-1.amazonaws.com/caleydo + node build.js --injectVersion --skipSaveImage --skipTests --noDefaultTags --pushExtra=${awsTag} --pushTo=922145058410.dkr.ecr.eu-central-1.amazonaws.com/caleydo - store_artifacts: path: build destination: build From f5e474a90367a702eaa78879ec9b050dbb94c833 Mon Sep 17 00:00:00 2001 From: Holger Stitz Date: Mon, 9 Mar 2020 20:52:40 +0100 Subject: [PATCH 25/51] Update build.js --- build.js | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/build.js b/build.js index 60392c4..a9b1cc3 100644 --- a/build.js +++ b/build.js @@ -14,7 +14,7 @@ const quiet = argv.quiet !== undefined; const now = new Date(); const prefix = (n) => n < 10 ? ('0' + n) : n.toString(); -const buildId = `${now.getUTCFullYear()}${prefix(now.getUTCMonth())}${prefix(now.getUTCDate())}-${prefix(now.getUTCHours())}${prefix(now.getUTCMinutes())}${prefix(now.getUTCSeconds())}`; +const buildId = `${now.getUTCFullYear()}${prefix(now.getUTCMonth()+1)}${prefix(now.getUTCDate())}-${prefix(now.getUTCHours())}${prefix(now.getUTCMinutes())}${prefix(now.getUTCSeconds())}`; pkg.version = pkg.version.replace('SNAPSHOT', buildId); const env = Object.assign({}, process.env); const productName = pkg.name.replace('_product', ''); From e45fd8d2234e513743d24c07d1b7988b571d2eaa Mon Sep 17 00:00:00 2001 From: dvvanessastoiber Date: Fri, 13 Mar 2020 07:39:04 +0100 Subject: [PATCH 26/51] update dependencies and remove mkdirp --- package.json | 19 +++++++++---------- 1 file changed, 9 insertions(+), 10 deletions(-) diff --git a/package.json b/package.json index 4633058..a53ab42 100644 --- a/package.json +++ b/package.json @@ -19,17 +19,16 @@ "scripts": { "build": "node build.js --skipTests", "predist": "npm run build", - "dist": "mkdirp dist && cd build && tar cvzf ../dist/ordino_product.tar.gz *" + "dist": "mkdir dist && cd build && tar cvzf ../dist/ordino_product.tar.gz *" }, "dependencies": { - "bluebird": "3.4.6", - "chalk": "1.1.3", - "fs-extra": "^1.0.0", - "generator-phovea": "github:phovea/generator-phovea#develop", - "lodash": "4.17.14", - "mkdirp": "0.5.1", - "yamljs": "0.2.8", - "yargs-parser": "4.2.0", - "yeoman-environment": "2.7.0" + "bluebird": "3.7.2", + "chalk": "3.0.0", + "fs-extra": "^8.1.0", + "generator-phovea": "^4.0.0", + "lodash": "4.17.15", + "yamljs": "0.3.0", + "yargs-parser": "18.0.0", + "yeoman-environment": "2.8.0" } } From 4d9dc343b1e8a774ceb3f356d1072750815b9840 Mon Sep 17 00:00:00 2001 From: dvvanessastoiber Date: Fri, 13 Mar 2020 07:39:14 +0100 Subject: [PATCH 27/51] switch to branch develop --- phovea_product.json | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/phovea_product.json b/phovea_product.json index 56246ea..de697fa 100644 --- a/phovea_product.json +++ b/phovea_product.json @@ -27,7 +27,7 @@ { "name": "tdp_core", "repo": "datavisyn/tdp_core", - "branch": "ochampari/10_tourdino-lineup-panel-button" + "branch": "develop" }, { "name": "ordino", @@ -94,7 +94,7 @@ { "name": "tdp_core", "repo": "datavisyn/tdp_core", - "branch": "ochampari/10_tourdino-lineup-panel-button" + "branch": "develop" }, { "name": "tdp_publicdb", From 919f35e35ae34915ff1bfc50cc6463a1fc30d2b9 Mon Sep 17 00:00:00 2001 From: Holger Stitz Date: Fri, 13 Mar 2020 20:14:52 +0100 Subject: [PATCH 28/51] Switch to tdp_core#develop --- phovea_product.json | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/phovea_product.json b/phovea_product.json index 56246ea..de697fa 100644 --- a/phovea_product.json +++ b/phovea_product.json @@ -27,7 +27,7 @@ { "name": "tdp_core", "repo": "datavisyn/tdp_core", - "branch": "ochampari/10_tourdino-lineup-panel-button" + "branch": "develop" }, { "name": "ordino", @@ -94,7 +94,7 @@ { "name": "tdp_core", "repo": "datavisyn/tdp_core", - "branch": "ochampari/10_tourdino-lineup-panel-button" + "branch": "develop" }, { "name": "tdp_publicdb", From 6ce5375242009523ccd9327ec5210ba67d4a53bf Mon Sep 17 00:00:00 2001 From: Holger Stitz Date: Mon, 16 Mar 2020 14:53:54 +0100 Subject: [PATCH 29/51] Switch generator-phovea to develop branch --- package.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/package.json b/package.json index a53ab42..d2aa6ad 100644 --- a/package.json +++ b/package.json @@ -25,7 +25,7 @@ "bluebird": "3.7.2", "chalk": "3.0.0", "fs-extra": "^8.1.0", - "generator-phovea": "^4.0.0", + "generator-phovea": "github:phovea/generator-phovea#develop", "lodash": "4.17.15", "yamljs": "0.3.0", "yargs-parser": "18.0.0", From 3fdcd101ea5e2741dfa968ab88cfda5d391dd14d Mon Sep 17 00:00:00 2001 From: dvvanessastoiber Date: Thu, 19 Mar 2020 07:12:18 +0100 Subject: [PATCH 30/51] prepare release 7.0.0 --- package.json | 2 +- phovea_product.json | 46 ++++++++++++++++++++++----------------------- 2 files changed, 24 insertions(+), 24 deletions(-) diff --git a/package.json b/package.json index d2aa6ad..2f05349 100644 --- a/package.json +++ b/package.json @@ -2,7 +2,7 @@ "name": "ordino_product", "description": "Analysis tool for cancer genomics to flexibly rank, filter and explore genes, cell lines and tissue samples.", "homepage": "https://phovea.caleydo.org", - "version": "6.0.2-SNAPSHOT", + "version": "7.0.0", "author": { "name": "datavisyn", "email": "contact@datavisyn.io", diff --git a/phovea_product.json b/phovea_product.json index de697fa..7ef3132 100644 --- a/phovea_product.json +++ b/phovea_product.json @@ -2,67 +2,67 @@ "type": "web", "label": "ordino", "repo": "Caleydo/ordino_public", - "branch": "develop", + "branch": "v7.0.0", "additional": [{ "name": "phovea_core", "repo": "phovea/phovea_core", - "branch": "develop" + "branch": "v4.0.0" }, { "name": "phovea_ui", "repo": "phovea/phovea_ui", - "branch": "develop" + "branch": "v4.0.0" }, { "name": "phovea_clue", "repo": "phovea/phovea_clue", - "branch": "develop" + "branch": "v5.0.0" }, { "name": "phovea_security_flask", "repo": "phovea/phovea_security_flask", - "branch": "develop" + "branch": "v5.0.0" }, { "name": "tdp_core", "repo": "datavisyn/tdp_core", - "branch": "develop" + "branch": "v9.0.0" }, { "name": "ordino", "repo": "Caleydo/ordino", - "branch": "develop" + "branch": "v7.0.0" }, { "name": "tdp_gene", "repo": "Caleydo/tdp_gene", - "branch": "develop" + "branch": "v6.0.0" }, { "name": "tdp_publicdb", "repo": "Caleydo/tdp_publicdb", - "branch": "develop" + "branch": "v7.0.0" }, { "name": "tdp_uploaded_data", "repo": "datavisyn/tdp_uploaded_data", - "branch": "develop" + "branch": "v7.0.0" }, { "name": "phovea_security_store_generated", "repo": "datavisyn/phovea_security_store_generated", - "branch": "develop" + "branch": "v7.0.0" }, { "name": "tdp_matomo", "repo": "datavisyn/tdp_matomo", - "branch": "develop" + "branch": "v4.0.0" }, { "name": "tourdino", "repo": "Caleydo/tourdino", - "branch": "develop" + "branch": "v1.1.0" } ] }, @@ -70,51 +70,51 @@ "type": "api", "label": "ordino_server", "repo": "phovea/phovea_server", - "branch": "develop", + "branch": "v5.0.0", "additional": [{ "name": "phovea_security_flask", "repo": "phovea/phovea_security_flask", - "branch": "develop" + "branch": "v5.0.0" }, { "name": "phovea_data_redis", "repo": "phovea/phovea_data_redis", - "branch": "develop" + "branch": "v5.0.0" }, { "name": "phovea_data_mongo", "repo": "phovea/phovea_data_mongo", - "branch": "develop" + "branch": "v5.0.0" }, { "name": "phovea_clue", "repo": "phovea/phovea_clue", - "branch": "develop" + "branch": "v5.0.0" }, { "name": "tdp_core", "repo": "datavisyn/tdp_core", - "branch": "develop" + "branch": "v9.0.0" }, { "name": "tdp_publicdb", "repo": "Caleydo/tdp_publicdb", - "branch": "develop" + "branch": "v7.0.0" }, { "name": "tdp_uploaded_data", "repo": "datavisyn/tdp_uploaded_data", - "branch": "develop" + "branch": "v7.0.0" }, { "name": "phovea_security_store_generated", "repo": "datavisyn/phovea_security_store_generated", - "branch": "develop" + "branch": "v7.0.0" }, { "name": "tdp_matomo", "repo": "datavisyn/tdp_matomo", - "branch": "develop" + "branch": "v4.0.0" } ] } From 0b2de0f24756fb6fd6f2c7a1d79521b26006e7ef Mon Sep 17 00:00:00 2001 From: dvvanessastoiber Date: Thu, 19 Mar 2020 07:40:44 +0100 Subject: [PATCH 31/51] update package-lock.json --- package-lock.json | 3382 +++++++++++++++++++-------------------------- 1 file changed, 1397 insertions(+), 1985 deletions(-) diff --git a/package-lock.json b/package-lock.json index 082b92e..8c2dc26 100644 --- a/package-lock.json +++ b/package-lock.json @@ -1,9 +1,73 @@ { "name": "ordino_product", - "version": "6.0.2-SNAPSHOT", + "version": "7.0.0", "lockfileVersion": 1, "requires": true, "dependencies": { + "@babel/code-frame": { + "version": "7.8.3", + "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.8.3.tgz", + "integrity": "sha512-a9gxpmdXtZEInkCSHUJDLHZVBgb1QS0jhss4cPP93EW7s+uC5bikET2twEF3KV+7rDblJcmNvTR7VJejqd2C2g==", + "requires": { + "@babel/highlight": "^7.8.3" + } + }, + "@babel/highlight": { + "version": "7.8.3", + "resolved": "https://registry.npmjs.org/@babel/highlight/-/highlight-7.8.3.tgz", + "integrity": "sha512-PX4y5xQUvy0fnEVHrYOarRPXVWafSjTW9T0Hab8gVIawpl2Sj0ORyrygANq+KjcNlSSTw0YCLSNA8OyZ1I4yEg==", + "requires": { + "chalk": "^2.0.0", + "esutils": "^2.0.2", + "js-tokens": "^4.0.0" + }, + "dependencies": { + "ansi-styles": { + "version": "3.2.1", + "resolved": "https://registry.npmjs.org/ansi-styles/-/ansi-styles-3.2.1.tgz", + "integrity": "sha512-VT0ZI6kZRdTh8YyJw3SMbYm/u+NqfsAxEpWO0Pf9sq8/e94WxxOpPKx9FR1FlyCtOVDNOQ+8ntlqFxiRc+r5qA==", + "requires": { + "color-convert": "^1.9.0" + } + }, + "chalk": { + "version": "2.4.2", + "resolved": "https://registry.npmjs.org/chalk/-/chalk-2.4.2.tgz", + "integrity": "sha512-Mti+f9lpJNcwF4tWV8/OrTTtF1gZi+f8FqlyAdouralcFWFQWF2+NgCHShjkCb+IFBLq9buZwE1xckQU4peSuQ==", + "requires": { + "ansi-styles": "^3.2.1", + "escape-string-regexp": "^1.0.5", + "supports-color": "^5.3.0" + } + }, + "color-convert": { + "version": "1.9.3", + "resolved": "https://registry.npmjs.org/color-convert/-/color-convert-1.9.3.tgz", + "integrity": "sha512-QfAUtd+vFdAtFQcC8CCyYt1fYWxSqAiK2cSD6zDB8N3cpsEBAvRxp9zOGg6G/SHHJYAT88/az/IuDGALsNVbGg==", + "requires": { + "color-name": "1.1.3" + } + }, + "color-name": { + "version": "1.1.3", + "resolved": "https://registry.npmjs.org/color-name/-/color-name-1.1.3.tgz", + "integrity": "sha1-p9BVi9icQveV3UIyj3QIMcpTvCU=" + }, + "has-flag": { + "version": "3.0.0", + "resolved": "https://registry.npmjs.org/has-flag/-/has-flag-3.0.0.tgz", + "integrity": "sha1-tdRU3CGZriJWmfNGfloH87lVuv0=" + }, + "supports-color": { + "version": "5.5.0", + "resolved": "https://registry.npmjs.org/supports-color/-/supports-color-5.5.0.tgz", + "integrity": "sha512-QjVjwdXIt408MIiAqCX4oUKsgU2EqAGzs2Ppkm4aQYbjm+ZEWEcW4SfFNTr4uMNZma0ey4f5lgLrkB0aX0QMow==", + "requires": { + "has-flag": "^3.0.0" + } + } + } + }, "@mrmlnc/readdir-enhanced": { "version": "2.2.1", "resolved": "https://registry.npmjs.org/@mrmlnc/readdir-enhanced/-/readdir-enhanced-2.2.1.tgz", @@ -23,86 +87,139 @@ "resolved": "https://registry.npmjs.org/@sindresorhus/is/-/is-0.7.0.tgz", "integrity": "sha512-ONhaKPIufzzrlNbqtWFFd+jlnemX6lJAgq9ZeiZtS7I1PIf/la7CW4m83rTXRnVnsMbW2k56pGYu7AUFJD9Pow==" }, - 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"rimraf": "^2.6.2", - "run-async": "^2.0.0", - "shelljs": "^0.8.0", - "text-table": "^0.2.0", - "through2": "^2.0.0", - "yeoman-environment": "^2.0.5" + "readable-stream": "2 || 3" } } } - }, - "yeoman-welcome": { - "version": "1.0.1", - "resolved": "https://registry.npmjs.org/yeoman-welcome/-/yeoman-welcome-1.0.1.tgz", - "integrity": "sha1-9s8Zj9T7qKdxZywmzfuKZHlchOw=", - "requires": { - "chalk": "^1.0.0" - } } } } From a76935c051fb3e8a06952d25625d3f5600d72e26 Mon Sep 17 00:00:00 2001 From: dvvanessastoiber Date: Thu, 19 Mar 2020 08:00:04 +0100 Subject: [PATCH 32/51] use correct version --- package.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/package.json b/package.json index 2f05349..a20b404 100644 --- a/package.json +++ b/package.json @@ -25,7 +25,7 @@ "bluebird": "3.7.2", "chalk": "3.0.0", "fs-extra": "^8.1.0", - "generator-phovea": "github:phovea/generator-phovea#develop", + "generator-phovea": "v5.0.0", "lodash": "4.17.15", "yamljs": "0.3.0", "yargs-parser": "18.0.0", From 0d32a76ac133120ff14bd240e2817d6899c5ff8d Mon Sep 17 00:00:00 2001 From: rumersdorfer <45141967+rumersdorfer@users.noreply.github.com> Date: Fri, 24 Apr 2020 14:57:14 +0200 Subject: [PATCH 33/51] Update README.md circleci links --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 34c7698..833d061 100644 --- a/README.md +++ b/README.md @@ -38,7 +38,7 @@ This repository is part of **[Phovea](http://phovea.caleydo.org/)**, a platform [phovea-url]: https://phovea.caleydo.org [npm-image]: https://badge.fury.io/js/ordino_product.svg [npm-url]: https://npmjs.org/package/ordino_product -[travis-image]: https://travis-ci.org/Caleydo/ordino_product.svg?branch=master -[travis-url]: https://travis-ci.org/Caleydo/ordino_product +[circleci-image]: https://circleci.com/gh/Caleydo/ordino_product.svg?style=shield +[circleci-url]: https://circleci.com/gh/Caleydo/ordino_product [daviddm-image]: https://david-dm.org/Caleydo/ordino_product/status.svg [daviddm-url]: https://david-dm.org/Caleydo/ordino_product From a2c0ece9b9cd38cc55bcd7d542f5634aded1d1a7 Mon Sep 17 00:00:00 2001 From: rumersdorfer <45141967+rumersdorfer@users.noreply.github.com> Date: Tue, 12 May 2020 16:49:40 +0200 Subject: [PATCH 34/51] Update README.md --- README.md | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 833d061..1696059 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,6 @@ -ordino_product [![Phovea][phovea-image]][phovea-url] [![CircleCI](https://circleci.com/gh/Caleydo/ordino_product.svg?style=svg)](https://circleci.com/gh/Caleydo/ordino_product) [![Dependency Status][daviddm-image]][daviddm-url] +ordino_product [![Phovea][phovea-image]][phovea-url] [![CircleCI](https://circleci.com/gh/Caleydo/ordino_product.svg?style=svg)](https://circleci.com/gh/Caleydo/ordino_product) ===================== - +[![Phovea][phovea-image]][phovea-url] [![NPM version][npm-image]][npm-url] [![Build Status][circleci-image]][circleci-url] Installation @@ -40,5 +40,4 @@ This repository is part of **[Phovea](http://phovea.caleydo.org/)**, a platform [npm-url]: https://npmjs.org/package/ordino_product [circleci-image]: https://circleci.com/gh/Caleydo/ordino_product.svg?style=shield [circleci-url]: https://circleci.com/gh/Caleydo/ordino_product -[daviddm-image]: https://david-dm.org/Caleydo/ordino_product/status.svg -[daviddm-url]: https://david-dm.org/Caleydo/ordino_product + From a42cc3b6696bb50b47d659b4b010e245d8668b34 Mon Sep 17 00:00:00 2001 From: Anita Steiner Date: Wed, 13 May 2020 08:11:55 +0200 Subject: [PATCH 35/51] Update README.md --- README.md | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/README.md b/README.md index 1696059..a585f27 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,6 @@ ordino_product [![Phovea][phovea-image]][phovea-url] [![CircleCI](https://circleci.com/gh/Caleydo/ordino_product.svg?style=svg)](https://circleci.com/gh/Caleydo/ordino_product) ===================== -[![Phovea][phovea-image]][phovea-url] [![NPM version][npm-image]][npm-url] [![Build Status][circleci-image]][circleci-url] +[![Phovea][phovea-image]][phovea-url] [![Build Status][circleci-image]][circleci-url] Installation @@ -36,8 +36,6 @@ This repository is part of **[Phovea](http://phovea.caleydo.org/)**, a platform [phovea-image]: https://img.shields.io/badge/Phovea-Product-FABC15.svg [phovea-url]: https://phovea.caleydo.org -[npm-image]: https://badge.fury.io/js/ordino_product.svg -[npm-url]: https://npmjs.org/package/ordino_product [circleci-image]: https://circleci.com/gh/Caleydo/ordino_product.svg?style=shield [circleci-url]: https://circleci.com/gh/Caleydo/ordino_product From 492665fbd7d75d60435f2463a47c63ed1efef308 Mon Sep 17 00:00:00 2001 From: anita-steiner Date: Tue, 28 Jul 2020 16:14:35 +0200 Subject: [PATCH 36/51] new workspace changes --- build.js | 43 ++++++++++++++----------------------------- 1 file changed, 14 insertions(+), 29 deletions(-) diff --git a/build.js b/build.js index a9b1cc3..61b4f90 100644 --- a/build.js +++ b/build.js @@ -24,13 +24,13 @@ function showHelp(steps, chain) { possible options: * --quiet ... reduce log messages * --serial ... build elements sequentially - * --skipTests ... skip tests + * --skipTests ... skip tests: will set the environment variable PHOVEA_SKIP_TESTS * --injectVersion ... injects the product version into the package.json of the built component * --useSSH ... clone via ssh instead of https * --skipCleanUp ... skip cleaning up old docker images * --skipSaveImage ... skip saving the generated docker images * --pushTo ... push docker images to the given registry - * --noDefaultTags ... don't push generated default tag : + * --noDefaultTags ... do not push generated default tag : * --pushExtra ... push additional custom tag: e.g., --pushExtra=develop * --forceLabel ... force to use the label even only a single service exists * --dryRun ... just compute chain no execution @@ -393,7 +393,7 @@ function patchWorkspace(p) { } if (argv.injectVersion) { - const pkgfile = `${p.tmpDir}/${p.name}/package.json`; + const pkgfile = `${p.tmpDir}/package.json`; if (fs.existsSync(pkgfile)) { const ppkg = require(pkgfile); ppkg.version = pkg.version; @@ -627,23 +627,23 @@ function buildDockerImage(p) { } function createWorkspace(p) { - return yo('workspace', {noAdditionals: true, defaultApp: 'phovea'}, p.tmpDir) + return yo('workspace', {noAdditionals: true, defaultApp: p.name}, p.tmpDir) .then(() => patchWorkspace(p)); } function installWebDependencies(p) { - return npm(p.additional.length > 0 ? p.tmpDir : (`${p.tmpDir}/${p.name}`), 'install'); + return npm(p.tmpDir, 'install'); } function showWebDependencies(p) { // `npm ls` fails if some peerDependencies are not installed // since this function is for debug purposes only, we catch possible errors of `npm()` and resolve it with status code `0`. - return npm(p.additional.length > 0 ? p.tmpDir : (`${p.tmpDir}/${p.name}`), 'list --depth=1') - .catch(() => Promise.resolve(0)) // status code = 0 + return npm(p.tmpDir, 'list --depth=1') + .catch(() => Promise.resolve(0)); // status code = 0 } function cleanUpWebDependencies(p) { - return fs.emptyDirAsync(p.additional.length > 0 ? `${p.tmpDir}/node_modules` : (`${p.tmpDir}/${p.name}/node_modules`)); + return fs.emptyDirAsync(`${p.tmpDir}/node_modules` ); } function resolvePluginTypes(p) { @@ -656,21 +656,10 @@ function resolvePluginTypes(p) { return Promise.all([resolvePluginType(p, p.tmpDir)].concat(p.additional.map((pi) => resolvePluginType(pi, p.tmpDir)))); } -function testWebAdditionals(p) { - return Promise.all(p.additional.map((pi) => npm(p.tmpDir, `run test${pi.isHybridType ? ':web' : ''}:${pi.name}`))); -} - function buildWeb(p) { - const hasAdditional = p.additional.length > 0; - - let step; - if (hasAdditional) { - step = npm(p.tmpDir, `run dist${p.isHybridType ? ':web' : ''}:${p.name}`); - } else { - step = npm(`${p.tmpDir}/${p.name}`, `run dist${p.isHybridType ? ':web' : ''}`); - } + const step = npm(p.tmpDir, `run dist`); // move to target directory - return step.then(() => fs.renameAsync(`${p.tmpDir}/${p.name}/dist/${p.name}.tar.gz`, `./build/${p.label}.tar.gz`)); + return step.then(() => fs.renameAsync(`${p.tmpDir}/dist/bundles.tar.gz`, `./build/${p.label}.tar.gz`)); } function installPythonTestDependencies(p) { @@ -682,7 +671,7 @@ function installPythonTestDependencies(p) { function showPythonTestDependencies(p) { // since this function is for debug purposes only, we catch possible errors and resolve it with status code `0`. return spawn('pip', 'list', {cwd: p.tmpDir}) - .catch(() => Promise.resolve(0)) // status code = 0 + .catch(() => Promise.resolve(0)); // status code = 0 } function buildServer(p) { @@ -822,7 +811,6 @@ if (require.main === module) { steps[`install:${suffix}`] = argv.skipTests ? () => null : () => catchProductBuild(p, installPythonTestDependencies(p)); steps[`show:${suffix}`] = () => catchProductBuild(p, showPythonTestDependencies(p)); } - steps[`test:${suffix}`] = isWeb && hasAdditional ? () => catchProductBuild(p, resolvePluginTypes(p).then(() => testWebAdditionals(p))) : () => null; steps[`build:${suffix}`] = isWeb ? () => catchProductBuild(p, resolvePluginTypes(p).then(() => buildWeb(p))) : () => catchProductBuild(p, resolvePluginTypes(p).then(() => buildServer(p))); steps[`data:${suffix}`] = () => catchProductBuild(p, downloadServerDataFiles(p)); steps[`postbuild:${suffix}`] = isWeb ? () => catchProductBuild(p, cleanUpWebDependencies(p)) : () => null; @@ -834,11 +822,8 @@ if (require.main === module) { } subSteps.push(`install:${suffix}`); subSteps.push(`show:${suffix}`); - - if (!argv.skipTests) { - subSteps.push(`test:${suffix}`); - } subSteps.push(`build:${suffix}`); + if (isServer && p.data.length > 0) { subSteps.push(`data:${suffix}`); } @@ -858,7 +843,7 @@ if (require.main === module) { // create some meta steps { const stepNames = Object.keys(steps); - for (const meta of ['clone', 'prepare', 'build', 'test', 'postbuild', 'image', 'product', 'install', 'show']) { + for (const meta of ['clone', 'prepare', 'build', 'postbuild', 'image', 'product', 'install', 'show']) { const sub = stepNames.filter((d) => d.startsWith(`${meta}:`)); if (sub.length <= 0) { continue; @@ -915,4 +900,4 @@ if (require.main === module) { if (!argv.dryRun) { launch(); } -} +} \ No newline at end of file From 3534db4b6d62bc5de6836f5f93bff214a0603a29 Mon Sep 17 00:00:00 2001 From: anita-steiner Date: Thu, 30 Jul 2020 02:34:49 +0200 Subject: [PATCH 37/51] update dependencies --- .gitignore | 33 ++++++++++++++++++++++----------- build.js | 24 +++++++++++++----------- package.json | 2 +- 3 files changed, 36 insertions(+), 23 deletions(-) diff --git a/.gitignore b/.gitignore index 2f10738..8208308 100644 --- a/.gitignore +++ b/.gitignore @@ -1,11 +1,22 @@ -/.tscache -/.idea -/build/ -/dist/ -node_modules/ -/src/**/*.js -/tests/**/*.js -*.map -*.css -*.log -/tmp*/ +# ignore all files and plugin repos of the workspace ... +.* +*.* +/*/ +* + +# ... except all files relevant for the product build +!/.circleci/ +!/.github +!/templates/ +!.editorconfig +!.gitattributes +!.yo-rc.json +!ISSUE_TEMPLATE.md +!LICENSE +!README.md +!build.js +!package.json +!phovea_product.* +!Jenkinsfile +!docker_script.sh +!docker-compose-patch.* diff --git a/build.js b/build.js index 61b4f90..f1f2c49 100644 --- a/build.js +++ b/build.js @@ -415,6 +415,12 @@ function patchWorkspace(p) { `; fs.writeFileSync(p.tmpDir + '/phovea_registry.js', registry); } + //copy template files of product to workspace of product + if (fs.existsSync(`./templates/${p.type}`)) { + fs.copySync(`./templates/${p.type}`, p.tmpDir); + } + + } function mergeCompose(composePartials) { @@ -607,7 +613,7 @@ function strObject(items) { } function buildDockerImage(p) { - const buildInSubDir = p.type === 'web' || p.type === 'static'; + const buildInSubDir = p.type === 'static'; let buildArgs = ''; // pass through http_proxy, no_proxy, and https_proxy env variables for (const key of Object.keys(process.env)) { @@ -617,11 +623,12 @@ function buildDockerImage(p) { buildArgs += ` --build-arg ${lkey}='${process.env[key]}'`; } } - + const dockerFile = `deploy${p.type === 'web' || p.type === 'api' ? '/' + p.type : ''}/Dockerfile`; + console.log('use dockerfile: ' + dockerFile); // patch the docker file with the with an optional given baseImage - return Promise.resolve(patchDockerfile(p, `${p.tmpDir}${buildInSubDir ? '/' + p.name : ''}/deploy/Dockerfile`)) + return Promise.resolve(patchDockerfile(p, `${p.tmpDir}${buildInSubDir ? '/' + p.name : ''}/${dockerFile}`)) // create the container image - .then(() => docker(`${p.tmpDir}${buildInSubDir ? '/' + p.name : ''}`, `build -t ${p.image}${buildArgs} -f deploy/Dockerfile .`)) + .then(() => docker(`${p.tmpDir}${buildInSubDir ? '/' + p.name : ''}`, `build -t ${p.image}${buildArgs} -f ${dockerFile} .`)) // tag the container image .then(() => argv.pushExtra ? docker(`${p.tmpDir}`, `tag ${p.image} ${p.image.substring(0, p.image.lastIndexOf(':'))}:${argv.pushExtra}`) : null); } @@ -686,11 +693,6 @@ function buildServer(p) { .then(() => fs.copyAsync(`${p.tmpDir}/${p.name}/build/source`, `${p.tmpDir}/build/source/`)) .then(() => Promise.all(p.additional.map((pi) => fs.copyAsync(`${p.tmpDir}/${pi.name}/build/source`, `${p.tmpDir}/build/source/`)))); - // copy main deploy thing and create a docker out of it - act = act - .then(() => fs.ensureDirAsync(`${p.tmpDir}/deploy`)) - .then(() => fs.copyAsync(`${p.tmpDir}/${p.name}/deploy`, `${p.tmpDir}/deploy/`)); - return act; } @@ -799,7 +801,7 @@ if (require.main === module) { } } - const needsWorkspace = (isWeb && hasAdditional) || isServer; + const needsWorkspace = isWeb || isServer; if(needsWorkspace) { steps[`prepare:${suffix}`] = () => catchProductBuild(p, createWorkspace(p)); } @@ -900,4 +902,4 @@ if (require.main === module) { if (!argv.dryRun) { launch(); } -} \ No newline at end of file +} diff --git a/package.json b/package.json index d2aa6ad..84618f4 100644 --- a/package.json +++ b/package.json @@ -25,7 +25,7 @@ "bluebird": "3.7.2", "chalk": "3.0.0", "fs-extra": "^8.1.0", - "generator-phovea": "github:phovea/generator-phovea#develop", + "generator-phovea": "github:phovea/generator-phovea#asteiner/394_product_handling", "lodash": "4.17.15", "yamljs": "0.3.0", "yargs-parser": "18.0.0", From 6b68bbd93e6332adb1c13ff1d3afeb79d64ad4c1 Mon Sep 17 00:00:00 2001 From: anita-steiner Date: Thu, 30 Jul 2020 02:38:51 +0200 Subject: [PATCH 38/51] update cache --- .circleci/config.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.circleci/config.yml b/.circleci/config.yml index 676549f..8111374 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -8,7 +8,7 @@ jobs: - checkout - setup_remote_docker - restore_cache: - key: dependency-cache-{{ checksum "package.json" }} + key: dependency1-cache-{{ checksum "package.json" }} - run: name: install-npm-wee command: npm install @@ -16,7 +16,7 @@ jobs: name: Show installed npm dependencies command: npm list --depth=1 || true - save_cache: - key: dependency-cache-{{ checksum "package.json" }} + key: dependency1-cache-{{ checksum "package.json" }} paths: - ./node_modules - restore_cache: From 07ccc326d2a8c55f48c22451c9a6b8a0b1338f4a Mon Sep 17 00:00:00 2001 From: anita-steiner Date: Thu, 30 Jul 2020 02:56:21 +0200 Subject: [PATCH 39/51] ignore package-lock.json --- .gitignore | 1 + build.js | 2 +- package-lock.json | 3811 ++++++++++++++++++++++++--------------------- 3 files changed, 2005 insertions(+), 1809 deletions(-) diff --git a/.gitignore b/.gitignore index 8208308..71e617c 100644 --- a/.gitignore +++ b/.gitignore @@ -3,6 +3,7 @@ *.* /*/ * +package-lock.json # ... except all files relevant for the product build !/.circleci/ diff --git a/build.js b/build.js index f1f2c49..8c658c6 100644 --- a/build.js +++ b/build.js @@ -639,7 +639,7 @@ function createWorkspace(p) { } function installWebDependencies(p) { - return npm(p.tmpDir, 'install'); + return npm(p.tmpDir, 'install').then(() => console.log('install finished')); } function showWebDependencies(p) { diff --git a/package-lock.json b/package-lock.json index 082b92e..0c223be 100644 --- a/package-lock.json +++ b/package-lock.json @@ -4,6 +4,75 @@ "lockfileVersion": 1, "requires": true, "dependencies": { + "@babel/code-frame": { + "version": "7.10.4", + "resolved": "https://registry.npmjs.org/@babel/code-frame/-/code-frame-7.10.4.tgz", + "integrity": "sha512-vG6SvB6oYEhvgisZNFRmRCUkLz11c7rp+tbNTynGqc6mS1d5ATd/sGyV6W0KZZnXRKMTzZDRgQT3Ou9jhpAfUg==", + "requires": { + "@babel/highlight": "^7.10.4" + } + }, + "@babel/helper-validator-identifier": { + "version": "7.10.4", + "resolved": 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"multimatch": "^4.0.0", - "rimraf": "^2.6.3", - "through2": "^3.0.1", - "vinyl": "^2.2.0" - }, - "dependencies": { - "globby": { - "version": "9.2.0", - "resolved": "https://registry.npmjs.org/globby/-/globby-9.2.0.tgz", - "integrity": "sha512-ollPHROa5mcxDEkwg6bPt3QbEf4pDQSNtd6JPL1YvOvAo/7/0VAm9TccUeoTmarjPw4pfUthSCqcyfNB1I3ZSg==", - "optional": true, - "requires": { - "@types/glob": "^7.1.1", - "array-union": "^1.0.2", - "dir-glob": "^2.2.2", - "fast-glob": "^2.2.6", - "glob": "^7.1.3", - "ignore": "^4.0.3", - "pify": "^4.0.1", - "slash": "^2.0.0" - } - } - } - } - } - } - } - } - } -} From 4bda4d6b1e2610f806ff260599237bdb65fcc99d Mon Sep 17 00:00:00 2001 From: anita-steiner Date: Thu, 30 Jul 2020 03:21:33 +0200 Subject: [PATCH 41/51] update cache --- .circleci/config.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.circleci/config.yml b/.circleci/config.yml index 8111374..1323bfb 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -8,7 +8,7 @@ jobs: - checkout - setup_remote_docker - restore_cache: - key: dependency1-cache-{{ checksum "package.json" }} + key: dependency2-cache-{{ checksum "package.json" }} - run: name: install-npm-wee command: npm install @@ -16,7 +16,7 @@ jobs: name: Show installed npm dependencies command: npm list --depth=1 || true - save_cache: - key: dependency1-cache-{{ checksum "package.json" }} + key: dependency2-cache-{{ checksum "package.json" }} paths: - ./node_modules - restore_cache: From b3d2a94e54d06ecef7eec1139af3cb08bd6be7cc Mon Sep 17 00:00:00 2001 From: dvvanessastoiber Date: Thu, 30 Jul 2020 10:55:38 +0200 Subject: [PATCH 42/51] update .gitignore --- .gitignore | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/.gitignore b/.gitignore index 71e617c..0f1a3fe 100644 --- a/.gitignore +++ b/.gitignore @@ -8,7 +8,15 @@ package-lock.json # ... except all files relevant for the product build !/.circleci/ !/.github -!/templates/ +!templates/ +!templates/web/ +!templates/web/deploy +!templates/web/deploy/web +!templates/web/deploy/web/* +!templates/api/ +!templates/api/deploy +!templates/api/deploy/api +!templates/api/deploy/api/* !.editorconfig !.gitattributes !.yo-rc.json From a33cd5cac6bb1a8d5b73230666d19f8e1f62875f Mon Sep 17 00:00:00 2001 From: dvvanessastoiber Date: Thu, 30 Jul 2020 10:55:47 +0200 Subject: [PATCH 43/51] switch branches --- phovea_product.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/phovea_product.json b/phovea_product.json index de697fa..c373d08 100644 --- a/phovea_product.json +++ b/phovea_product.json @@ -2,7 +2,7 @@ "type": "web", "label": "ordino", "repo": "Caleydo/ordino_public", - "branch": "develop", + "branch": "vstoiber/move_deploy", "additional": [{ "name": "phovea_core", "repo": "phovea/phovea_core", From a06a48069b553ae68b77ff9d381b908c842fcd95 Mon Sep 17 00:00:00 2001 From: dvvanessastoiber Date: Thu, 30 Jul 2020 10:55:49 +0200 Subject: [PATCH 44/51] add files --- templates/api/deploy/api/Dockerfile | 22 +++++++ templates/api/deploy/api/Dockerfile_dev | 44 +++++++++++++ templates/web/deploy/web/Dockerfile | 9 +++ templates/web/deploy/web/nginx-default.conf | 69 +++++++++++++++++++++ 4 files changed, 144 insertions(+) create mode 100644 templates/api/deploy/api/Dockerfile create mode 100644 templates/api/deploy/api/Dockerfile_dev create mode 100644 templates/web/deploy/web/Dockerfile create mode 100644 templates/web/deploy/web/nginx-default.conf diff --git a/templates/api/deploy/api/Dockerfile b/templates/api/deploy/api/Dockerfile new file mode 100644 index 0000000..85ea6e9 --- /dev/null +++ b/templates/api/deploy/api/Dockerfile @@ -0,0 +1,22 @@ +FROM python:3.7-buster + +LABEL maintainer="contact@caleydo.org" +WORKDIR /phovea + +# install dependencies last step such that everything before can be cached +COPY requirements*.txt docker_packages.txt docker_script*.sh _docker_data* ./ +RUN (!(test -s docker_packages.txt) || (apt-get update && \ + (cat docker_packages.txt | xargs apt-get install -y))) && \ + (pip install --no-cache-dir -r requirements.txt) +RUN (!(test -s docker_script.sh) || (bash ./docker_script.sh)) + +COPY ./build/source ./ + +# Create separate launch file (similar to phovea_server/__main__.py from repository root), because it is not included in build files +RUN printf "from phovea_server import launch\nlaunch.run()\n" > /phovea/launch.py + +ENV PHOVEA_ENV=production +ENV PHOVEA_SERVICE=api +ENV PHOVEA_CONFIG_PATH=config.json +CMD python launch.py --env ${PHOVEA_ENV} ${PHOVEA_SERVICE} +EXPOSE 80 diff --git a/templates/api/deploy/api/Dockerfile_dev b/templates/api/deploy/api/Dockerfile_dev new file mode 100644 index 0000000..cc8fe09 --- /dev/null +++ b/templates/api/deploy/api/Dockerfile_dev @@ -0,0 +1,44 @@ +FROM python:3.7-buster + +LABEL maintainer="contact@caleydo.org" + +ARG http_proxy +ARG HTTP_PROXY +ARG https_proxy +ARG HTTPS_PROXY +ARG no_proxy +ARG NO_PROXY + +WORKDIR /phovea + +# install dependencies last step such that everything before can be cached +COPY requirements*.txt docker_packages.txt docker_script*.sh _docker_data* ./ +RUN (!(test -s docker_packages.txt) || (apt-get -y update && cat docker_packages.txt | xargs apt-get install -y)) && \ + pip install --no-cache-dir -r requirements.txt && \ + (pip install --no-cache-dir -r requirements_dev.txt) +RUN (!(test -s docker_script.sh) || bash ./docker_script.sh) + +#### +# Environment mode (dev or prod) +#### +ENV PHOVEA_ENV=dev + +#### +# The name must match the registred command in /phovea_server/phovea_server/__init__.py +# Example: `registry.append('command', 'api', 'phovea_server.server', {'isDefault': True})` +#### +ENV PHOVEA_SERVICE=api + +#### +# The path to the phovea config.json +# In a local workspace setup the /config.json is used here. +#### +ENV PHOVEA_CONFIG_PATH=config.json + +#### +# Use `phovea_server` as entry point and add some arguments and the service as command. +# In a local workspace setup it will call the /phovea_server/__main__.py, which runs the /phovea_server/launcher.py +#### +CMD python phovea_server/__main__.py --use_reloader --env ${PHOVEA_ENV} ${PHOVEA_SERVICE} + +EXPOSE 80 diff --git a/templates/web/deploy/web/Dockerfile b/templates/web/deploy/web/Dockerfile new file mode 100644 index 0000000..42402c6 --- /dev/null +++ b/templates/web/deploy/web/Dockerfile @@ -0,0 +1,9 @@ +FROM nginx:alpine + +LABEL maintainer="contact@caleydo.org" + +ENV PHOVEA_API_SERVER=api +ENV PHOVEA_NGINX_PORT=80 +COPY ./deploy/web/nginx-default.conf /etc/nginx/conf.d/default.conf +CMD sed -i -e "s/PHOVEA_API_SERVER/${PHOVEA_API_SERVER-api}/g" /etc/nginx/conf.d/default.conf && sed -i -e "s/PHOVEA_NGINX_PORT/${PHOVEA_NGINX_PORT-api}/g" /etc/nginx/conf.d/default.conf && nginx -g 'daemon off;' +COPY ./bundles /usr/share/nginx/html diff --git a/templates/web/deploy/web/nginx-default.conf b/templates/web/deploy/web/nginx-default.conf new file mode 100644 index 0000000..3c73ea0 --- /dev/null +++ b/templates/web/deploy/web/nginx-default.conf @@ -0,0 +1,69 @@ +# If we receive X-Forwarded-Proto, pass it through; otherwise, pass along the +# scheme used to connect to this server +map $http_x_forwarded_proto $proxy_x_forwarded_proto { +default $http_x_forwarded_proto; +'' $scheme; +} + +# If we receive Upgrade, set Connection to "upgrade"; otherwise, delete any +# Connection header that may have been passed to this server +map $http_upgrade $proxy_connection { +default upgrade; +'' close; +} + +map "${sent_http_etag}${sent_http_last_modified}${sent_http_cache_control}${request_method}${status}" $expires { +default off; +'GET200' 6h; +} + +server { + listen PHOVEA_NGINX_PORT; + server_name localhost; + + location / { + expires modified +12h; + add_header Cache-Control public; + + root /usr/share/nginx/html; + index index.html index.htm; + } + + error_page 500 502 503 504 /50x.html; + location = /50x.html { + root /usr/share/nginx/html; + } + + location ~ ^/(api|login|logout|loggedinas) { + + proxy_pass http://PHOVEA_API_SERVER; + # HTTP 1.1 support + proxy_http_version 1.1; + proxy_buffering off; + proxy_set_header Host $http_host; + proxy_set_header Upgrade $http_upgrade; + proxy_set_header Connection $proxy_connection; + proxy_set_header X-Real-IP $remote_addr; + proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for; + proxy_set_header X-Forwarded-Proto $proxy_x_forwarded_proto; + + # Mitigate httpoxy attack (see README for details) + proxy_set_header Proxy ""; + + # timeout in 600sec = 10min + proxy_connect_timeout 600; + proxy_send_timeout 600; + proxy_read_timeout 600; + send_timeout 600; + client_max_body_size 64m; + + add_header Cache-Control private; + expires $expires; + } +} + +gzip on; +gzip_proxied no_etag; +gzip_types text/plain text/comma-separated-values image/svg+xml text/xml text/css application/x-javascript application/javascript application/xml application/xml+rss text/csv application/json text/javascript application/xhtml+xml; +gzip_vary on; +gzip_disable "MSIE [1-6]\.(?!.*SV1)"; From 4d0002cd2322614a633b848a9f7e9dc148947674 Mon Sep 17 00:00:00 2001 From: dvvanessastoiber Date: Thu, 30 Jul 2020 12:40:40 +0200 Subject: [PATCH 45/51] switch to develop --- package.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/package.json b/package.json index 84618f4..d2aa6ad 100644 --- a/package.json +++ b/package.json @@ -25,7 +25,7 @@ "bluebird": "3.7.2", "chalk": "3.0.0", "fs-extra": "^8.1.0", - "generator-phovea": "github:phovea/generator-phovea#asteiner/394_product_handling", + "generator-phovea": "github:phovea/generator-phovea#develop", "lodash": "4.17.15", "yamljs": "0.3.0", "yargs-parser": "18.0.0", From 7b04bf87069aaf142438c3fcd7661558add04037 Mon Sep 17 00:00:00 2001 From: Anita Steiner Date: Fri, 31 Jul 2020 11:30:30 +0200 Subject: [PATCH 46/51] Update phovea_product.json --- phovea_product.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/phovea_product.json b/phovea_product.json index c373d08..de697fa 100644 --- a/phovea_product.json +++ b/phovea_product.json @@ -2,7 +2,7 @@ "type": "web", "label": "ordino", "repo": "Caleydo/ordino_public", - "branch": "vstoiber/move_deploy", + "branch": "develop", "additional": [{ "name": "phovea_core", "repo": "phovea/phovea_core", From ab58eae866dcfa2ecfefaa34242b2b489e8d553f Mon Sep 17 00:00:00 2001 From: Holger Stitz Date: Thu, 13 Aug 2020 16:09:39 +0200 Subject: [PATCH 47/51] Use ordino-public cluster for stable release --- .circleci/config.yml | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) diff --git a/.circleci/config.yml b/.circleci/config.yml index 1323bfb..7b866a0 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -82,14 +82,14 @@ jobs: tasksExists=$(aws --output text ecs list-task-definitions --family-prefix ${awsFamily}) echo "existsTaskDefinition? --${tasksExists}--" if [ ! -z "$tasksExists" ]; then - isTaskRunning=$(aws --output text ecs list-tasks --cluster caleydo --family ${awsFamily}) + isTaskRunning=$(aws --output text ecs list-tasks --cluster ordino-public --family ${awsFamily}) echo "isTaskRunning? --${isTaskRunning}--" if [ ! -z "$isTaskRunning" ]; then taskId=$(echo "${isTaskRunning}" | cut -f2) echo "taskId--${taskId}--" - aws --output text ecs stop-task --cluster caleydo --task ${taskId} + aws --output text ecs stop-task --cluster ordino-public --task ${taskId} fi - aws --output text ecs run-task --cluster caleydo --task-definition ${awsFamily} --started-by CircleCIAutoUpdate + aws --output text ecs run-task --cluster ordino-public --task-definition ${awsFamily} --started-by CircleCIAutoUpdate fi workflows: @@ -118,4 +118,3 @@ workflows: ignore: /.*/ tags: only: /^v.*/ - From 6775ed8345aaf659bf84bf6ccc3ed323a2654d45 Mon Sep 17 00:00:00 2001 From: dvvanessastoiber Date: Thu, 13 Aug 2020 16:25:36 +0200 Subject: [PATCH 48/51] update version numbers --- package.json | 2 +- phovea_product.json | 38 +++++++++++++++++++------------------- 2 files changed, 20 insertions(+), 20 deletions(-) diff --git a/package.json b/package.json index a20b404..7c9ee3e 100644 --- a/package.json +++ b/package.json @@ -25,7 +25,7 @@ "bluebird": "3.7.2", "chalk": "3.0.0", "fs-extra": "^8.1.0", - "generator-phovea": "v5.0.0", + "generator-phovea": "^6.0.0", "lodash": "4.17.15", "yamljs": "0.3.0", "yargs-parser": "18.0.0", diff --git a/phovea_product.json b/phovea_product.json index 7ef3132..07941e1 100644 --- a/phovea_product.json +++ b/phovea_product.json @@ -2,57 +2,57 @@ "type": "web", "label": "ordino", "repo": "Caleydo/ordino_public", - "branch": "v7.0.0", + "branch": "v8.0.0", "additional": [{ "name": "phovea_core", "repo": "phovea/phovea_core", - "branch": "v4.0.0" + "branch": "v5.0.1" }, { "name": "phovea_ui", "repo": "phovea/phovea_ui", - "branch": "v4.0.0" + "branch": "v5.0.0" }, { "name": "phovea_clue", "repo": "phovea/phovea_clue", - "branch": "v5.0.0" + "branch": "v6.0.0" }, { "name": "phovea_security_flask", "repo": "phovea/phovea_security_flask", - "branch": "v5.0.0" + "branch": "v6.0.0" }, { "name": "tdp_core", "repo": "datavisyn/tdp_core", - "branch": "v9.0.0" + "branch": "v10.0.1" }, { "name": "ordino", "repo": "Caleydo/ordino", - "branch": "v7.0.0" + "branch": "v8.0.1" }, { "name": "tdp_gene", "repo": "Caleydo/tdp_gene", - "branch": "v6.0.0" + "branch": "v7.0.1" }, { "name": "tdp_publicdb", "repo": "Caleydo/tdp_publicdb", - "branch": "v7.0.0" + "branch": "v8.0.1" }, { "name": "tdp_uploaded_data", "repo": "datavisyn/tdp_uploaded_data", - "branch": "v7.0.0" + "branch": "v8.0.1" }, { "name": "phovea_security_store_generated", "repo": "datavisyn/phovea_security_store_generated", - "branch": "v7.0.0" + "branch": "v8.0.1" }, { "name": "tdp_matomo", @@ -62,7 +62,7 @@ { "name": "tourdino", "repo": "Caleydo/tourdino", - "branch": "v1.1.0" + "branch": "v2.0.0" } ] }, @@ -74,12 +74,12 @@ "additional": [{ "name": "phovea_security_flask", "repo": "phovea/phovea_security_flask", - "branch": "v5.0.0" + "branch": "v6.0.0" }, { "name": "phovea_data_redis", "repo": "phovea/phovea_data_redis", - "branch": "v5.0.0" + "branch": "v6.0.0" }, { "name": "phovea_data_mongo", @@ -89,27 +89,27 @@ { "name": "phovea_clue", "repo": "phovea/phovea_clue", - "branch": "v5.0.0" + "branch": "v6.0.0" }, { "name": "tdp_core", "repo": "datavisyn/tdp_core", - "branch": "v9.0.0" + "branch": "v10.0.1" }, { "name": "tdp_publicdb", "repo": "Caleydo/tdp_publicdb", - "branch": "v7.0.0" + "branch": "v8.0.1" }, { "name": "tdp_uploaded_data", "repo": "datavisyn/tdp_uploaded_data", - "branch": "v7.0.0" + "branch": "v8.0.1" }, { "name": "phovea_security_store_generated", "repo": "datavisyn/phovea_security_store_generated", - "branch": "v7.0.0" + "branch": "v8.0.1" }, { "name": "tdp_matomo", From 9b8b2d888c03d041eee35a210feaa3e2b3a3e078 Mon Sep 17 00:00:00 2001 From: Holger Stitz Date: Thu, 13 Aug 2020 16:29:31 +0200 Subject: [PATCH 49/51] Disable nightly build --- .circleci/config.yml | 20 ++++++++++---------- 1 file changed, 10 insertions(+), 10 deletions(-) diff --git a/.circleci/config.yml b/.circleci/config.yml index 7b866a0..6a7c64f 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -94,16 +94,16 @@ jobs: workflows: version: 2 - build-nightly: - triggers: - - schedule: # nightly build during weekday - cron: "15 1 * * 1-5" - filters: - branches: - only: - - develop - jobs: - - build + # build-nightly: + # triggers: + # - schedule: # nightly build during weekday + # cron: "15 1 * * 1-5" + # filters: + # branches: + # only: + # - develop + # jobs: + # - build build-branch: jobs: - build: From 3f10ecea665235f70c074c0b2b73537eb9d89f7c Mon Sep 17 00:00:00 2001 From: dvvanessastoiber Date: Thu, 13 Aug 2020 16:30:55 +0200 Subject: [PATCH 50/51] update matomo version --- phovea_product.json | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/phovea_product.json b/phovea_product.json index 07941e1..4616f5b 100644 --- a/phovea_product.json +++ b/phovea_product.json @@ -57,7 +57,7 @@ { "name": "tdp_matomo", "repo": "datavisyn/tdp_matomo", - "branch": "v4.0.0" + "branch": "v5.0.0" }, { "name": "tourdino", @@ -114,7 +114,7 @@ { "name": "tdp_matomo", "repo": "datavisyn/tdp_matomo", - "branch": "v4.0.0" + "branch": "v5.0.0" } ] } From ed6e99f888b1db182ebb109ec35e8688182ed429 Mon Sep 17 00:00:00 2001 From: Holger Stitz Date: Thu, 13 Aug 2020 16:31:08 +0200 Subject: [PATCH 51/51] Update version numbers in phovea_product.json --- phovea_product.json | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/phovea_product.json b/phovea_product.json index 07941e1..035d492 100644 --- a/phovea_product.json +++ b/phovea_product.json @@ -57,7 +57,7 @@ { "name": "tdp_matomo", "repo": "datavisyn/tdp_matomo", - "branch": "v4.0.0" + "branch": "v5.0.0" }, { "name": "tourdino", @@ -70,7 +70,7 @@ "type": "api", "label": "ordino_server", "repo": "phovea/phovea_server", - "branch": "v5.0.0", + "branch": "v6.0.0", "additional": [{ "name": "phovea_security_flask", "repo": "phovea/phovea_security_flask", @@ -84,7 +84,7 @@ { "name": "phovea_data_mongo", "repo": "phovea/phovea_data_mongo", - "branch": "v5.0.0" + "branch": "v6.0.0" }, { "name": "phovea_clue", @@ -114,7 +114,7 @@ { "name": "tdp_matomo", "repo": "datavisyn/tdp_matomo", - "branch": "v4.0.0" + "branch": "v5.0.0" } ] }