diff --git a/README.md b/README.md index a4c1cd3..27fdccf 100644 --- a/README.md +++ b/README.md @@ -1,3 +1,6 @@ +[![Total alerts](https://img.shields.io/lgtm/alerts/g/CaileanCarter/AbxRxPro.svg?logo=lgtm&logoWidth=18)](https://lgtm.com/projects/g/CaileanCarter/AbxRxPro/alerts/) +[![Language grade: Python](https://img.shields.io/lgtm/grade/python/g/CaileanCarter/AbxRxPro.svg?logo=lgtm&logoWidth=18)](https://lgtm.com/projects/g/CaileanCarter/AbxRxPro/context:python) + # AbxRxPro: antibiotic resistance profiler AbxRxPro is a web-page visualisation tool for phenotypic antibiotic resistance using the graphing module Plotly. The plot can be annotated with genotypic data from antibiotic resistance genes identifying programmes like RGI (resistance gene identifier), staramr and amrfinder. The AbxRxPro package comes with a Galaxy workflow for the inputting of genome sequences through these antibiotic resistance genes identifiers. Frequencies for genes across your given isolates are plotted in a seperate tab.