v1.10.0

What's Changed

• Bump dependabot/fetch-metadata from 1.3.6 to 1.4.0 by @dependabot in #401
• Bump tox from 4.4.11 to 4.4.12 by @dependabot in #402
• Bump numpy from 1.24.2 to 1.24.3 by @dependabot in #403
• Bump tox from 4.4.12 to 4.5.0 by @dependabot in #405
• Bump coverage from 7.2.3 to 7.2.5 by @dependabot in #406
• Bump tox from 4.5.0 to 4.5.1 by @dependabot in #407
• Bump dependabot/fetch-metadata from 1.4.0 to 1.5.0 by @dependabot in #408
• Bump rojopolis/spellcheck-github-actions from 0.30.0 to 0.32.0 by @dependabot in #409
• Bump sphinx-rtd-theme from 1.2.0 to 1.2.1 by @dependabot in #415
• Bump cython from 0.29.34 to 0.29.35 by @dependabot in #416
• Bump pytest-cov from 4.0.0 to 4.1.0 by @dependabot in #414
• Bump tox from 4.5.1 to 4.5.2 by @dependabot in #413
• Bump dependabot/fetch-metadata from 1.5.0 to 1.5.1 by @dependabot in #411
• Bump coverage from 7.2.5 to 7.2.7 by @dependabot in #412
• Bump tox from 4.5.2 to 4.6.0 by @dependabot in #417
• Bump sphinx-rtd-theme from 1.2.1 to 1.2.2 by @dependabot in #419
• Bump ujson from 5.7.0 to 5.8.0 by @dependabot in #418
• Bump numpy from 1.24.3 to 1.25.0 by @dependabot in #422
• Bump tox from 4.6.0 to 4.6.2 by @dependabot in #421
• Bump rojopolis/spellcheck-github-actions from 0.32.0 to 0.33.0 by @dependabot in #420
• Feature/python 3 10 by @gimppa in #423
• [#227] implement jku checking feature by @gimppa in #424
• Update pytest requirement from <7.4 to <7.5 by @dependabot in #425
• Bump authlib from 1.2.0 to 1.2.1 by @dependabot in #427
• Bump tox from 4.6.2 to 4.6.3 by @dependabot in #426
• Bump dependabot/fetch-metadata from 1.5.1 to 1.6.0 by @dependabot in #428
• Bump jsonschema from 4.17.3 to 4.18.0 by @dependabot in #430
• Bump numpy from 1.25.0 to 1.25.1 by @dependabot in #431
• Bump asyncpg from 0.27.0 to 0.28.0 by @dependabot in #429
• Bump cython from 0.29.35 to 0.29.36 by @dependabot in #432
• Bump tox from 4.6.3 to 4.6.4 by @dependabot in #433
• Update to python 3.10 by @blankdots in #439

New Contributors

• @gimppa made their first contribution in #423

Full Changelog: v1.9.3...v1.10.0

v1.9.3

What's Changed

• Bump ujson from 5.6.0 to 5.7.0 by @dependabot in #369
• Bump cython from 0.29.32 to 0.29.33 by @dependabot in #370
• Bump coverage from 7.0.2 to 7.0.4 by @dependabot in #368
• Bump tox from 4.1.3 to 4.2.6 by @dependabot in #371
• Bump coverage from 7.0.4 to 7.0.5 by @dependabot in #372
• Bump tox from 4.2.6 to 4.3.1 by @dependabot in #374
• Bump tox from 4.3.1 to 4.3.3 by @dependabot in #375
• Bump tox from 4.3.3 to 4.3.5 by @dependabot in #376
• Bump dependabot/fetch-metadata from 1.3.5 to 1.3.6 by @dependabot in #377
• Bump tox from 4.3.5 to 4.4.2 by @dependabot in #378
• Bump flake8-docstrings from 1.6.0 to 1.7.0 by @dependabot in #379
• Bump coverage from 7.0.5 to 7.1.0 by @dependabot in #380
• Bump docker/build-push-action from 3 to 4 by @dependabot in #381
• Bump black from 22.12.0 to 23.1.0 by @dependabot in #382
• Bump numpy from 1.24.1 to 1.24.2 by @dependabot in #384
• Bump tox from 4.4.2 to 4.4.4 by @dependabot in #383
• Bump tox from 4.4.4 to 4.4.5 by @dependabot in #386
• Bump aiohttp from 3.8.3 to 3.8.4 by @dependabot in #387
• Bump testfixtures from 7.0.4 to 7.1.0 by @dependabot in #385
• Bump sphinx-rtd-theme from 1.1.1 to 1.2.0 by @dependabot in #388
• Bump rojopolis/spellcheck-github-actions from 0.29.0 to 0.30.0 by @dependabot in #389
• Bump coverage from 7.1.0 to 7.2.1 by @dependabot in #390
• Bump tox from 4.4.5 to 4.4.6 by @dependabot in #391
• Bump tox from 4.4.6 to 4.4.7 by @dependabot in #392
• Bump coverage from 7.2.1 to 7.2.2 by @dependabot in #393
• Bump tox from 4.4.7 to 4.4.8 by @dependabot in #394
• Bump black from 23.1.0 to 23.3.0 by @dependabot in #397
• Bump cython from 0.29.33 to 0.29.34 by @dependabot in #396
• Bump coverage from 7.2.2 to 7.2.3 by @dependabot in #398
• Update pytest requirement from <7.3 to <7.4 by @dependabot in #400
• Bump tox from 4.4.8 to 4.4.11 by @dependabot in #399

Full Changelog: v1.9.2...v1.9.3

v1.9.2

What's Changed

• Update pytest requirement from <7.2 to <7.3 by @dependabot in #337
• Bump tox from 3.26.0 to 3.27.0 by @dependabot in #336
• Bump asyncpg from 0.26.0 to 0.27.0 by @dependabot in #335
• Bump testfixtures from 7.0.0 to 7.0.3 by @dependabot in #338
• Bump jsonschema from 4.16.0 to 4.17.0 by @dependabot in #339
• Bump sphinx-rtd-theme from 1.0.0 to 1.1.1 by @dependabot in #340
• Bump dependabot/fetch-metadata from 1.3.4 to 1.3.5 by @dependabot in #341
• Bump actions/dependency-review-action from 2 to 3 by @dependabot in #342
• Bump tox from 3.27.0 to 3.27.1 by @dependabot in #343
• refactor for deprecated set-output gh action by @blankdots in #344
• publish action to master by @blankdots in #345
• Bump rojopolis/spellcheck-github-actions from 0.27.0 to 0.28.0 by @dependabot in #346
• Bump numpy from 1.23.4 to 1.23.5 by @dependabot in #347
• Bump jsonschema from 4.17.0 to 4.17.1 by @dependabot in #348
• Bump flake8 from 5.0.4 to 6.0.0 by @dependabot in #349
• Bump testfixtures from 7.0.3 to 7.0.4 by @dependabot in #351
• Bump ujson from 5.5.0 to 5.6.0 by @dependabot in #350
• Bump jsonschema from 4.17.1 to 4.17.3 by @dependabot in #352
• Bump tox from 3.27.1 to 4.0.8 by @dependabot in #353
• Bump black from 22.10.0 to 22.12.0 by @dependabot in #354
• Bump authlib from 1.1.0 to 1.2.0 by @dependabot in #355
• use new way of generating lcov from coverage by @blankdots in #356
• Bump coverage from 6.5.0 to 7.0.0 by @dependabot in #359
• Bump aioresponses from 0.7.3 to 0.7.4 by @dependabot in #357
• Bump numpy from 1.23.5 to 1.24.0 by @dependabot in #358
• Bump tox from 4.0.8 to 4.0.15 by @dependabot in #360
• Bump coverage from 7.0.0 to 7.0.1 by @dependabot in #361
• Bump tox from 4.0.15 to 4.0.18 by @dependabot in #362
• Bump numpy from 1.24.0 to 1.24.1 by @dependabot in #363
• Bump tox from 4.0.18 to 4.1.2 by @dependabot in #365
• Bump rojopolis/spellcheck-github-actions from 0.28.0 to 0.29.0 by @dependabot in #364
• Bump tox from 4.1.2 to 4.1.3 by @dependabot in #366
• Bump coverage from 7.0.1 to 7.0.2 by @dependabot in #367

Full Changelog: v1.9.1...v1.9.2

v1.9.1

What's Changed

Dependency updates

• Bump tox from 3.24.4 to 3.24.5 by @dependabot in #241
• Bump jsonschema from 4.3.2 to 4.3.3 by @dependabot in #240
• Bump numpy from 1.21.5 to 1.22.0 by @dependabot in #242
• Bump aioresponses from 0.7.2 to 0.7.3 by @dependabot in #245
• Bump jsonschema from 4.3.3 to 4.4.0 by @dependabot in #246
• Bump numpy from 1.22.0 to 1.22.1 by @dependabot in #247
• Bump rojopolis/spellcheck-github-actions from 0.20.0 to 0.21.1 by @dependabot in #249
• Bump black from 21.12b0 to 22.1.0 by @dependabot in #250
• Bump coverage from 6.2 to 6.3 by @dependabot in #251
• Bump cython from 0.29.26 to 0.29.27 by @dependabot in #252
• Bump numpy from 1.22.1 to 1.22.2 by @dependabot in #253
• Update pytest requirement from <6.3 to <7.1 by @dependabot in #254
• Bump coverage from 6.3 to 6.3.1 by @dependabot in #255
• Bump rojopolis/spellcheck-github-actions from 0.21.1 to 0.22.0 by @dependabot in #256
• Bump coverage from 6.3.1 to 6.3.2 by @dependabot in #257
• Bump cython from 0.29.27 to 0.29.28 by @dependabot in #258
• Bump actions/setup-python from 2 to 3 by @dependabot in #259
• Bump testfixtures from 6.18.3 to 6.18.4 by @dependabot in #261
• Bump rojopolis/spellcheck-github-actions from 0.22.0 to 0.22.1 by @dependabot in #260
• Bump testfixtures from 6.18.4 to 6.18.5 by @dependabot in #265
• Bump actions/upload-artifact from 2.3.1 to 3 by @dependabot in #263
• Bump actions/checkout from 2 to 3 by @dependabot in #262
• Bump numpy from 1.22.2 to 1.22.3 by @dependabot in #264
• Update pytest requirement from <7.1 to <7.2 by @dependabot in #266
• Bump cyvcf2 from 0.30.14 to 0.30.15 by @dependabot in #267
• Bump black from 22.1.0 to 22.3.0 by @dependabot in #269
• Bump rojopolis/spellcheck-github-actions from 0.22.1 to 0.23.0 by @dependabot in #270
• Bump tox from 3.24.5 to 3.25.0 by @dependabot in #272
• Bump ujson from 5.1.0 to 5.2.0 by @dependabot in #271
• Bump github/codeql-action from 1 to 2 by @dependabot in #274
• Bump authlib from 0.15.5 to 1.0.1 by @dependabot in #273
• Bump docker/setup-buildx-action from 1 to 2 by @dependabot in #275
• Bump docker/build-push-action from 2 to 3 by @dependabot in #276
• Bump jsonschema from 4.4.0 to 4.5.1 by @dependabot in #277
• Bump docker/login-action from 1 to 2 by @dependabot in #279
• Bump coverage from 6.3.2 to 6.3.3 by @dependabot in #280
• Bump rojopolis/spellcheck-github-actions from 0.23.0 to 0.24.0 by @dependabot in #282
• Bump cython from 0.29.28 to 0.29.30 by @dependabot in #283
• Bump ujson from 5.2.0 to 5.3.0 by @dependabot in #284
• Bump numpy from 1.22.3 to 1.22.4 by @dependabot in #285
• Bump coverage from 6.3.3 to 6.4 by @dependabot in #286
• fix docs by @teemukataja in #290
• Bump coverage from 6.4 to 6.4.1 by @dependabot in #287
• Bump jsonschema from 4.5.1 to 4.6.0 by @dependabot in #288
• Bump actions/setup-python from 3 to 4 by @dependabot in #289
• Bump numpy from 1.22.4 to 1.23.0 by @dependabot in #291
• Bump tox from 3.25.0 to 3.25.1 by @dependabot in #292
• Bump ujson from 5.3.0 to 5.4.0 by @dependabot in #293
• Bump jsonschema from 4.6.0 to 4.6.1 by @dependabot in #294
• Bump black from 22.3.0 to 22.6.0 by @dependabot in #295
• Bump jsonschema from 4.6.1 to 4.7.1 by @dependabot in #300
• Bump testfixtures from 6.18.5 to 7.0.0 by @dependabot in #299
• Bump numpy from 1.23.0 to 1.23.1 by @dependabot in #298
• Bump asyncpg from 0.25.0 to 0.26.0 by @dependabot in #297
• Bump rojopolis/spellcheck-github-actions from 0.24.0 to 0.25.0 by @dependabot in #296
• Bump jsonschema from 4.7.1 to 4.7.2 by @dependabot in #301
• Bump coverage from 6.4.1 to 6.4.2 by @dependabot in #302
• Create combine-dependabot-prs.yml by @teemukataja in #306
• Bump flake8 from 4.0.1 to 5.0.2 by @dependabot in #303
• Bump cython from 0.29.30 to 0.29.32 by @dependabot in #304
• Bump jsonschema from 4.7.2 to 4.9.1 by @dependabot in #307
• Bump rojopolis/spellcheck-github-actions from 0.25.0 to 0.26.0 by @dependabot in #308
• Bump flake8 from 5.0.2 to 5.0.4 by @dependabot in #309
• Bump coverage from 6.4.2 to 6.4.4 by @dependabot in #314
• Bump numpy from 1.23.1 to 1.23.2 by @dependabot in #312
• Bump cyvcf2 from 0.30.15 to 0.30.16 by @dependabot in #311
• Bump jsonschema from 4.9.1 to 4.15.0 by @dependabot in #315
• Bump black from 22.6.0 to 22.8.0 by @dependabot in #316
• Create dependency-review.yml by @blankdots in #318
• Create dependabot-auto-merge.yml by @blankdots in #319
• Bump tox from 3.25.1 to 3.26.0 by @dependabot in #317
• Bump rojopolis/spellcheck-github-actions from 0.26.0 to 0.27.0 by @dependabot in #320
• Bump dependabot/fetch-metadata from 1.1.1 to 1.3.3 by @dependabot in #321
• Bump numpy from 1.23.2 to 1.23.3 by @dependabot in #323
• Bump jsonschema from 4.15.0 to 4.16.0 by @dependabot in #322
• Bump ujson from 5.4.0 to 5.5.0 by @dependabot in #324
• Bump uvloop from 0.16.0 to 0.17.0 by @dependabot in #325
• Bump authlib from 1.0.1 to 1.1.0 by @dependabot in #326
• refine auto-merge updates by @blankdots in #327
• Bump aiohttp from 3.8.1 to 3.8.3 by @dependabot in #328
• Bump dependabot/fetch-metadata from 1.3.3 to 1.3.4 by @dependabot in #329
• Bump coverage from 6.4.4 to 6.5.0 by @dependabot in #330
• Bump pytest-cov from 3.0.0 to 4.0.0 by @dependabot in #332
• Bump cyvcf2 from 0.30.16 to 0.30.18 by @dependabot in #331
• Bump black from 22.8.0 to 22.10.0 by @dependabot in #333
• Bump numpy from 1.23.3 to 1.23.4 by @dependabot in #334

Full Changelog: v1.9.0...v1.9.1

beacon-python v1.9.0

• Fix/beacon init #225
• switch from misspell to pyspelling and introduce black formatting #237
• Bump aiohttp from 3.7.4.post0 to 3.8.1 #221
• moved to using ujson as json library
• dropped python 3.6 support
• updated dependencies

beacon-python v1.8.0

New command line argument --min_allele_count for beacon_init tool (#157)

beacon-python v1.7.2

#153 and #154

Change of github actions and refactor and fixes

beacon-python v1.7.1

Catched JWT decoding error causing HTTP 500.

beacon-python v1.7.0

• Introduction of Python typing https://docs.python.org/3.7/library/typing.html
• switched to github actions
• optimised JSON schemas
• other fixes

beacon-python v1.6.0-rc0

• updated /service-info endpoint to latest specification from GA4GH https://github.com/ga4gh-discovery/ga4gh-service-info
• bug fix in package dependecies
• other small updates