From c5979f0ba99bcd89d08bd3d95a85e3cea2f5b9fa Mon Sep 17 00:00:00 2001
From: Alec Edgington <54802828+cqc-alec@users.noreply.github.com>
Date: Wed, 17 Jan 2024 16:03:54 +0000
Subject: [PATCH 01/17] [infra] Fix typo in build commands for scheduled run.
 (#1217)

---
 .github/workflows/build_and_test.yml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/build_and_test.yml b/.github/workflows/build_and_test.yml
index b78207d2a5..f8522c0719 100644
--- a/.github/workflows/build_and_test.yml
+++ b/.github/workflows/build_and_test.yml
@@ -282,7 +282,7 @@ jobs:
       if: github.event_name == 'schedule' # https://github.com/CQCL/tket/issues/1200
       run: |
         cd pytket
-        pip install -e -v
+        pip install -e . -v
     - name: Run doctests
       run: |
         cd pytket
@@ -395,7 +395,7 @@ jobs:
       if: github.event_name == 'schedule' # https://github.com/CQCL/tket/issues/1200
       run: |
         cd pytket
-        python${{ matrix.python-version }} -m pip install -e -v
+        python${{ matrix.python-version }} -m pip install -e . -v
     - name: Run doctests
       run: |
         cd pytket
@@ -522,7 +522,7 @@ jobs:
       if: github.event_name == 'schedule' # https://github.com/CQCL/tket/issues/1200
       run: |
         cd pytket
-        pip install -e -v
+        pip install -e . -v
     - name: Run doctests
       run: |
         cd pytket

From 5a924d65910f25e842c2f6769e68fc40bbba0c5d Mon Sep 17 00:00:00 2001
From: Alec Edgington <54802828+cqc-alec@users.noreply.github.com>
Date: Thu, 18 Jan 2024 16:36:30 +0000
Subject: [PATCH 02/17] Update to catch2 3.5.2 (#1223)

---
 .github/workflows/build-without-conan.yml | 6 +++---
 build-without-conan.md                    | 6 +++---
 libs/tkassert/test/conanfile.py           | 2 +-
 libs/tklog/test/conanfile.py              | 2 +-
 libs/tkrng/test/conanfile.py              | 2 +-
 libs/tktokenswap/test/conanfile.py        | 2 +-
 libs/tkwsm/test/conanfile.py              | 2 +-
 pytket/conanfile.py                       | 2 +-
 tket/conanfile.py                         | 4 ++--
 9 files changed, 14 insertions(+), 14 deletions(-)

diff --git a/.github/workflows/build-without-conan.yml b/.github/workflows/build-without-conan.yml
index 4c60023946..edcfba3a3f 100644
--- a/.github/workflows/build-without-conan.yml
+++ b/.github/workflows/build-without-conan.yml
@@ -74,9 +74,9 @@ jobs:
     - name: Install catch2
       run: |
         cd ${TMP_DIR}
-        wget https://github.com/catchorg/Catch2/archive/refs/tags/v3.5.1.tar.gz
-        tar xzvf v3.5.1.tar.gz
-        cd Catch2-3.5.1/
+        wget https://github.com/catchorg/Catch2/archive/refs/tags/v3.5.2.tar.gz
+        tar xzvf v3.5.2.tar.gz
+        cd Catch2-3.5.2/
         mkdir build
         cd build
         cmake -GNinja -DCMAKE_INSTALL_PREFIX=${INSTALL_DIR} ..
diff --git a/build-without-conan.md b/build-without-conan.md
index 5f9b4b5c62..3ea0a2908a 100644
--- a/build-without-conan.md
+++ b/build-without-conan.md
@@ -91,9 +91,9 @@ cmake --install .
 
 ```
 cd ${TMP_DIR}
-wget https://github.com/catchorg/Catch2/archive/refs/tags/v3.5.1.tar.gz
-tar xzvf v3.5.1.tar.gz
-cd Catch2-3.5.1/
+wget https://github.com/catchorg/Catch2/archive/refs/tags/v3.5.2.tar.gz
+tar xzvf v3.5.2.tar.gz
+cd Catch2-3.5.2/
 mkdir build
 cd build
 cmake -DCMAKE_INSTALL_PREFIX=${INSTALL_DIR} ..
diff --git a/libs/tkassert/test/conanfile.py b/libs/tkassert/test/conanfile.py
index 867a9e7861..498c921f81 100644
--- a/libs/tkassert/test/conanfile.py
+++ b/libs/tkassert/test/conanfile.py
@@ -60,4 +60,4 @@ def package(self):
 
     def requirements(self):
         self.requires("tkassert/0.3.4")
-        self.requires("catch2/3.5.1")
+        self.requires("catch2/3.5.2")
diff --git a/libs/tklog/test/conanfile.py b/libs/tklog/test/conanfile.py
index 7c5a7eff22..9d1596c24b 100644
--- a/libs/tklog/test/conanfile.py
+++ b/libs/tklog/test/conanfile.py
@@ -60,4 +60,4 @@ def package(self):
 
     def requirements(self):
         self.requires("tklog/0.3.3")
-        self.requires("catch2/3.5.1")
+        self.requires("catch2/3.5.2")
diff --git a/libs/tkrng/test/conanfile.py b/libs/tkrng/test/conanfile.py
index 9715a6840a..025d26376b 100644
--- a/libs/tkrng/test/conanfile.py
+++ b/libs/tkrng/test/conanfile.py
@@ -60,4 +60,4 @@ def package(self):
 
     def requirements(self):
         self.requires("tkrng/0.3.3")
-        self.requires("catch2/3.5.1")
+        self.requires("catch2/3.5.2")
diff --git a/libs/tktokenswap/test/conanfile.py b/libs/tktokenswap/test/conanfile.py
index a8d4b316a3..865e8080bd 100644
--- a/libs/tktokenswap/test/conanfile.py
+++ b/libs/tktokenswap/test/conanfile.py
@@ -61,4 +61,4 @@ def package(self):
     def requirements(self):
         self.requires("tktokenswap/0.3.6")
         self.requires("tkrng/0.3.3@tket/stable")
-        self.requires("catch2/3.5.1")
+        self.requires("catch2/3.5.2")
diff --git a/libs/tkwsm/test/conanfile.py b/libs/tkwsm/test/conanfile.py
index 84c60d0c90..da4850bf1a 100644
--- a/libs/tkwsm/test/conanfile.py
+++ b/libs/tkwsm/test/conanfile.py
@@ -62,4 +62,4 @@ def requirements(self):
         self.requires("tkwsm/0.3.6")
         self.requires("tkassert/0.3.4@tket/stable")
         self.requires("tkrng/0.3.3@tket/stable")
-        self.requires("catch2/3.5.1")
+        self.requires("catch2/3.5.2")
diff --git a/pytket/conanfile.py b/pytket/conanfile.py
index 352e0785b4..2c47955011 100644
--- a/pytket/conanfile.py
+++ b/pytket/conanfile.py
@@ -32,7 +32,7 @@ def package(self):
         cmake.install()
 
     def requirements(self):
-        self.requires("tket/1.2.86@tket/stable")
+        self.requires("tket/1.2.87@tket/stable")
         self.requires("tklog/0.3.3@tket/stable")
         self.requires("tkrng/0.3.3@tket/stable")
         self.requires("tkassert/0.3.4@tket/stable")
diff --git a/tket/conanfile.py b/tket/conanfile.py
index 98f4ac9285..9bc611d7ec 100644
--- a/tket/conanfile.py
+++ b/tket/conanfile.py
@@ -23,7 +23,7 @@
 
 class TketConan(ConanFile):
     name = "tket"
-    version = "1.2.86"
+    version = "1.2.87"
     package_type = "library"
     license = "Apache 2"
     homepage = "https://github.com/CQCL/tket"
@@ -121,7 +121,7 @@ def requirements(self):
         self.requires("tktokenswap/0.3.6@tket/stable")
         self.requires("tkwsm/0.3.6@tket/stable")
         if self.build_test():
-            self.test_requires("catch2/3.5.1")
+            self.test_requires("catch2/3.5.2")
         if self.build_proptest():
             self.test_requires("rapidcheck/cci.20230815")
 

From d53061ca318de3034dee8576f8de75bb5a4aec13 Mon Sep 17 00:00:00 2001
From: Alec Edgington <54802828+cqc-alec@users.noreply.github.com>
Date: Fri, 19 Jan 2024 12:28:09 +0000
Subject: [PATCH 03/17] Use ARM-Linux runners from buildjet instead of using
 docker on the self-hosted Mac. (#1225)

---
 .github/workflows/packages.yml | 11 +-------
 .github/workflows/release.yml  | 49 +++++++++++++++-------------------
 2 files changed, 22 insertions(+), 38 deletions(-)

diff --git a/.github/workflows/packages.yml b/.github/workflows/packages.yml
index 1254788bc3..35b72ef1bb 100644
--- a/.github/workflows/packages.yml
+++ b/.github/workflows/packages.yml
@@ -68,26 +68,17 @@ jobs:
 
   build_manylinux_aarch64:
     name: Build on manylinux (aarch64)
-    runs-on: ['self-hosted', 'macOS', 'ARM64']
+    runs-on: 'buildjet-8vcpu-ubuntu-2204-arm'
     steps:
 
     - uses: actions/checkout@v4
 
     - name: Set up container
       run: |
-        export DOCKER_HOST=unix://${HOME}/.docker/run/docker.sock
-        docker rm --force -v linux_build
         docker create --name linux_build -i -v /:/host quay.io/pypa/manylinux_2_28_aarch64:latest /bin/bash
         docker cp . linux_build:/tket/
 
     - name: Install and upload packages
       run: |
-        export DOCKER_HOST=unix://${HOME}/.docker/run/docker.sock
         docker start linux_build
         docker exec -e JFROG_ARTIFACTORY_TOKEN_3="${{ secrets.JFROG_ARTIFACTORY_TOKEN_3 }}" -e JFROG_ARTIFACTORY_USER_3="${{ secrets.JFROG_ARTIFACTORY_USER_3 }}" -e CONAN_PROFILE=linux-armv8-gcc12 linux_build /bin/bash -c "/tket/.github/workflows/linuxbuildpackages"
-
-    - name: Remove container
-      if: always()
-      run: |
-        export DOCKER_HOST=unix://${HOME}/.docker/run/docker.sock
-        docker rm --force -v linux_build
diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
index bd6f55e630..a02458d5cb 100644
--- a/.github/workflows/release.yml
+++ b/.github/workflows/release.yml
@@ -37,7 +37,8 @@ jobs:
 
   build_Linux_aarch64_wheels:
     name: Build manylinux aarch64
-    runs-on: ['self-hosted', 'macOS', 'ARM64']
+    # We need the one with 12GB RAM to build pytket.
+    runs-on: 'buildjet-8vcpu-ubuntu-2204-arm'
     strategy:
       matrix:
         python3-version: ['10', '11', '12']
@@ -48,28 +49,18 @@ jobs:
     - run: git fetch --depth=1 origin +refs/tags/*:refs/tags/*
     - name: Set up container
       run: |
-        export DOCKER_HOST=unix://${HOME}/.docker/run/docker.sock
         docker create --name linux_build -i -v /:/host quay.io/pypa/manylinux_2_28_aarch64:latest /bin/bash
         docker cp . linux_build:/tket/
     - name: Run build
       run: |
-        export DOCKER_HOST=unix://${HOME}/.docker/run/docker.sock
         docker start linux_build
         docker exec -e PY_TAG="cp3${{ matrix.python3-version }}-cp3${{ matrix.python3-version }}" -e CONAN_PROFILE=linux-armv8-gcc12 linux_build /bin/bash -c "/tket/.github/workflows/linuxbuildwheel"
         mkdir wheelhouse
         docker cp linux_build:/tket/pytket/audited/. wheelhouse/
-    - name: Remove container
-      if: always()
-      run: |
-        export DOCKER_HOST=unix://${HOME}/.docker/run/docker.sock
-        docker rm --force -v linux_build
     - uses: actions/upload-artifact@v4
       with:
         name: Linux_aarch64_3.${{ matrix.python3-version }}_wheel
         path: wheelhouse/
-    - name: Remove directory
-      if: always()
-      run: rm -rf wheelhouse
 
   build_macos_wheels:
     name: Build macos wheels
@@ -227,7 +218,7 @@ jobs:
   test_Linux_aarch64_wheels:
     name: Test linux aarch64 wheels
     needs: build_Linux_aarch64_wheels
-    runs-on: ['self-hosted', 'macOS', 'ARM64']
+    runs-on: 'buildjet-4vcpu-ubuntu-2204-arm'
     strategy:
       matrix:
         python3-version: ['10', '11', '12']
@@ -235,29 +226,31 @@ jobs:
     - uses: actions/checkout@v4
       with:
         path: tket
+    - name: Set up Python 3.${{ matrix.python3-version }}
+      # Use deadsnakes/action because Python for Linux/ARM is not available with
+      # actions/setup-python.
+      # Python 3.10 is the default python on Ubuntu 22.04, so this combination
+      # is not available from deadsnakes: use the default python in this case.
+      if: matrix.python3-version != '10'
+      uses: deadsnakes/action@v3.1.0
+      with:
+        python-version: "3.${{ matrix.python3-version }}"
     - name: Download wheel
       uses: actions/download-artifact@v4
       with:
         name: Linux_aarch64_3.${{ matrix.python3-version }}_wheel
         path: wheelhouse/
-    - name: Set up container
+    - name: Install wheel
+      run: pip install wheelhouse/pytket-*.whl
+    - uses: actions/checkout@v4
+      with:
+        path: tket
+    - name: Setup tests
       run: |
-        export DOCKER_HOST=unix://${HOME}/.docker/run/docker.sock
-        docker create --name linux_build -i -v /:/host quay.io/pypa/manylinux_2_28_aarch64:latest /bin/bash
-        docker cp . linux_build:/tket/
+        cd tket/pytket/tests
+        pip install -U -r requirements.txt
     - name: Run tests
-      run: |
-        export DOCKER_HOST=unix://${HOME}/.docker/run/docker.sock
-        docker start linux_build
-        docker exec -e PY_TAG="cp3${{ matrix.python3-version }}-cp3${{ matrix.python3-version }}" linux_build /bin/bash -c "/tket/.github/workflows/linuxtestwheel"
-    - name: Remove container
-      if: always()
-      run: |
-        export DOCKER_HOST=unix://${HOME}/.docker/run/docker.sock
-        docker rm --force -v linux_build
-    - name: Remove directory
-      if: always()
-      run: rm -rf wheelhouse
+      run: cd tket/pytket/tests && pytest --ignore=simulator/
 
   test_macos_wheels:
     name: Test macos wheels

From 4582602c2d33882daae08967de23dbad66dcebec Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 22 Jan 2024 09:20:34 +0000
Subject: [PATCH 04/17] Bump actions/cache from 3 to 4 (#1226)

Bumps [actions/cache](https://github.com/actions/cache) from 3 to 4.
- [Release notes](https://github.com/actions/cache/releases)
- [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md)
- [Commits](https://github.com/actions/cache/compare/v3...v4)

---
updated-dependencies:
- dependency-name: actions/cache
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
---
 .github/workflows/build_and_test.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/build_and_test.yml b/.github/workflows/build_and_test.yml
index f8522c0719..efb15f79ec 100644
--- a/.github/workflows/build_and_test.yml
+++ b/.github/workflows/build_and_test.yml
@@ -194,7 +194,7 @@ jobs:
         with:
           format: YYYYMMDDHHmmss
       - name: ccache windows
-        uses: actions/cache@v3
+        uses: actions/cache@v4
         with:
           path: ${{ steps.ninja-ccache-setup.outputs.ccache_dir }}
           key: tket-static-${{ matrix.os }}-${{ steps.current_time.outputs.formattedTime }}
@@ -467,7 +467,7 @@ jobs:
       with:
         format: YYYYMMDDHHmmss
     - name: ccache windows
-      uses: actions/cache@v3
+      uses: actions/cache@v4
       with:
         path: ${{ steps.ccache-setup.outputs.ccache_dir }}
         key: tket-dynamic-visual-studio-windows-2022-${{ steps.current_time.outputs.formattedTime }}

From 6906704b0ad64d077dff5c71454652926f91ee12 Mon Sep 17 00:00:00 2001
From: Alec Edgington <54802828+cqc-alec@users.noreply.github.com>
Date: Mon, 22 Jan 2024 12:24:48 +0000
Subject: [PATCH 05/17] Don't raise exception if zx is not installed (#1228)

---
 pytket/pytket/zx/tensor_eval.py | 7 +++----
 pytket/tests/zx_diagram_test.py | 1 +
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/pytket/pytket/zx/tensor_eval.py b/pytket/pytket/zx/tensor_eval.py
index bfc4ab790e..ba104b6ed6 100644
--- a/pytket/pytket/zx/tensor_eval.py
+++ b/pytket/pytket/zx/tensor_eval.py
@@ -16,6 +16,7 @@
 numpy tensor features, in particular the einsum evaluation and optimisations."""
 from typing import Dict, List, Any
 from math import floor, pi, sqrt, cos, sin
+import warnings
 import sympy
 import numpy as np
 from pytket.zx import (
@@ -34,12 +35,10 @@
 try:
     import quimb.tensor as qtn  # type: ignore
 except ModuleNotFoundError as err:
-    err.msg = (
+    warnings.warn(
         'Missing package for tensor evaluation of ZX diagrams. Run "pip '
-        "install 'pytket[ZX]'\" to install the optional dependencies and try "
-        "again."
+        "install 'pytket[ZX]'\" to install the optional dependencies."
     )
-    raise err
 
 
 def _gen_to_tensor(gen: ZXGen, rank: int) -> np.ndarray:
diff --git a/pytket/tests/zx_diagram_test.py b/pytket/tests/zx_diagram_test.py
index fc24a52998..f123b008fa 100644
--- a/pytket/tests/zx_diagram_test.py
+++ b/pytket/tests/zx_diagram_test.py
@@ -37,6 +37,7 @@
 
 have_quimb: bool = True
 try:
+    import quimb.tensor  # type: ignore
     from pytket.zx.tensor_eval import (
         unitary_from_quantum_diagram,
         fix_boundaries_to_binary_states,

From d25b915604bdf4c9e0dd467b0a714c7a7c173f92 Mon Sep 17 00:00:00 2001
From: Alec Edgington <54802828+cqc-alec@users.noreply.github.com>
Date: Wed, 24 Jan 2024 15:15:30 +0000
Subject: [PATCH 06/17] [infra] Export compile commands. (#1229)

---
 pytket/CMakeLists.txt | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/pytket/CMakeLists.txt b/pytket/CMakeLists.txt
index fd11218bcd..5c2e5360a1 100644
--- a/pytket/CMakeLists.txt
+++ b/pytket/CMakeLists.txt
@@ -48,6 +48,8 @@ endif()
 
 list(APPEND CMAKE_MODULE_PATH "${CMAKE_BINARY_DIR}")
 
+set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
+
 set(Boost_NO_BOOST_CMAKE ON)
 
 if (WIN32)

From 44f401ce50cf907f5a510523a08eb75da4e2a74d Mon Sep 17 00:00:00 2001
From: CalMacCQ <93673602+CalMacCQ@users.noreply.github.com>
Date: Wed, 24 Jan 2024 16:13:59 +0000
Subject: [PATCH 07/17] Add `CXConfigType` to API docs (#1230)

* add missing CXConfigType to pytket.circuit docs

* remove special members
---
 pytket/docs/circuit.rst | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/pytket/docs/circuit.rst b/pytket/docs/circuit.rst
index 4cae8e2a11..3c2418ba97 100644
--- a/pytket/docs/circuit.rst
+++ b/pytket/docs/circuit.rst
@@ -20,6 +20,8 @@ pytket.circuit
     :members:
 .. autoclass:: pytket._tket.circuit.BasisOrder
     :members:
+.. autoclass:: pytket._tket.circuit.CXConfigType
+    :members:
 .. autoclass:: pytket._tket.circuit.CircBox
     :special-members:
     :members:
@@ -114,4 +116,4 @@ pytket.circuit
     :members:
 .. autoclass:: pytket._tket.circuit.DummyBox
     :special-members:
-    :members:
+    :members:
\ No newline at end of file

From 26b5f37bea982604011f37e4d43173ccd9f82d50 Mon Sep 17 00:00:00 2001
From: Alec Edgington <54802828+cqc-alec@users.noreply.github.com>
Date: Fri, 26 Jan 2024 11:13:19 +0000
Subject: [PATCH 08/17] [infra]Use boost 1.84.0 in libs. (#1233)

---
 libs/tktokenswap/conanfile.py      | 4 ++--
 libs/tktokenswap/test/conanfile.py | 2 +-
 libs/tkwsm/conanfile.py            | 4 ++--
 libs/tkwsm/test/conanfile.py       | 2 +-
 4 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/libs/tktokenswap/conanfile.py b/libs/tktokenswap/conanfile.py
index 0bebcbd278..db0d5a6d1a 100644
--- a/libs/tktokenswap/conanfile.py
+++ b/libs/tktokenswap/conanfile.py
@@ -19,7 +19,7 @@
 
 class TktokenswapConan(ConanFile):
     name = "tktokenswap"
-    version = "0.3.6"
+    version = "0.3.7"
     package_type = "library"
     license = "Apache 2"
     url = "https://github.com/CQCL/tket"
@@ -73,4 +73,4 @@ def requirements(self):
         self.requires("tklog/0.3.3@tket/stable")
         self.requires("tkassert/0.3.4@tket/stable", transitive_headers=True)
         self.requires("tkrng/0.3.3@tket/stable")
-        self.requires("boost/1.83.0", transitive_libs=False)
+        self.requires("boost/1.84.0", transitive_libs=False)
diff --git a/libs/tktokenswap/test/conanfile.py b/libs/tktokenswap/test/conanfile.py
index 865e8080bd..8923967b3f 100644
--- a/libs/tktokenswap/test/conanfile.py
+++ b/libs/tktokenswap/test/conanfile.py
@@ -59,6 +59,6 @@ def package(self):
         cmake.install()
 
     def requirements(self):
-        self.requires("tktokenswap/0.3.6")
+        self.requires("tktokenswap/0.3.7")
         self.requires("tkrng/0.3.3@tket/stable")
         self.requires("catch2/3.5.2")
diff --git a/libs/tkwsm/conanfile.py b/libs/tkwsm/conanfile.py
index 5d33f177c2..613655278d 100644
--- a/libs/tkwsm/conanfile.py
+++ b/libs/tkwsm/conanfile.py
@@ -19,7 +19,7 @@
 
 class TkwsmConan(ConanFile):
     name = "tkwsm"
-    version = "0.3.6"
+    version = "0.3.7"
     package_type = "library"
     license = "Apache 2"
     url = "https://github.com/CQCL/tket"
@@ -72,4 +72,4 @@ def package_info(self):
     def requirements(self):
         self.requires("tkassert/0.3.4@tket/stable")
         self.requires("tkrng/0.3.3@tket/stable")
-        self.requires("boost/1.83.0", transitive_headers=True, transitive_libs=False)
+        self.requires("boost/1.84.0", transitive_headers=True, transitive_libs=False)
diff --git a/libs/tkwsm/test/conanfile.py b/libs/tkwsm/test/conanfile.py
index da4850bf1a..ee1ae1c54f 100644
--- a/libs/tkwsm/test/conanfile.py
+++ b/libs/tkwsm/test/conanfile.py
@@ -59,7 +59,7 @@ def package(self):
         cmake.install()
 
     def requirements(self):
-        self.requires("tkwsm/0.3.6")
+        self.requires("tkwsm/0.3.7")
         self.requires("tkassert/0.3.4@tket/stable")
         self.requires("tkrng/0.3.3@tket/stable")
         self.requires("catch2/3.5.2")

From 08d58f1ebc5572130b1020ed5e654445a4cd4427 Mon Sep 17 00:00:00 2001
From: Alec Edgington <54802828+cqc-alec@users.noreply.github.com>
Date: Fri, 26 Jan 2024 11:59:27 +0000
Subject: [PATCH 09/17] [infra] Update to boost 1.84, tkwsm 0.3.7 and
 tktokenswap 0.3.7 (#1234)

---
 .github/workflows/build-without-conan.yml | 6 +++---
 build-without-conan.md                    | 8 ++++----
 pytket/conanfile.py                       | 6 +++---
 tket/conanfile.py                         | 8 ++++----
 4 files changed, 14 insertions(+), 14 deletions(-)

diff --git a/.github/workflows/build-without-conan.yml b/.github/workflows/build-without-conan.yml
index edcfba3a3f..7807b620d8 100644
--- a/.github/workflows/build-without-conan.yml
+++ b/.github/workflows/build-without-conan.yml
@@ -30,9 +30,9 @@ jobs:
     - name: Install boost
       run: |
         cd ${TMP_DIR}
-        wget -O boost_1_83_0.tar.gz https://sourceforge.net/projects/boost/files/boost/1.83.0/boost_1_83_0.tar.gz/download
-        tar xzvf boost_1_83_0.tar.gz
-        cd boost_1_83_0/
+        wget -O boost_1_84_0.tar.gz https://sourceforge.net/projects/boost/files/boost/1.84.0/boost_1_84_0.tar.gz/download
+        tar xzvf boost_1_84_0.tar.gz
+        cd boost_1_84_0/
         ./bootstrap.sh --prefix=${INSTALL_DIR}
         ./b2
         ./b2 install
diff --git a/build-without-conan.md b/build-without-conan.md
index 3ea0a2908a..e756bec4fb 100644
--- a/build-without-conan.md
+++ b/build-without-conan.md
@@ -22,9 +22,9 @@ The versions should match the current requirements as specified in the relevant
 
 ```
 cd ${TMP_DIR}
-wget -O boost_1_83_0.tar.gz https://sourceforge.net/projects/boost/files/boost/1.83.0/boost_1_83_0.tar.gz/download
-tar xzvf boost_1_83_0.tar.gz
-cd boost_1_83_0/
+wget -O boost_1_84_0.tar.gz https://sourceforge.net/projects/boost/files/boost/1.84.0/boost_1_84_0.tar.gz/download
+tar xzvf boost_1_84_0.tar.gz
+cd boost_1_84_0/
 ./bootstrap.sh --prefix=${INSTALL_DIR}
 ./b2
 ./b2 install
@@ -258,4 +258,4 @@ NO_CONAN=1 pip install -v -e .
 
 (You can use the environment variable `PYTKET_CMAKE_N_THREADS` to restrict the
 number of threads used in the above command; otherwise one thread per CPU is
-used.)
\ No newline at end of file
+used.)
diff --git a/pytket/conanfile.py b/pytket/conanfile.py
index 2c47955011..95728ed3a1 100644
--- a/pytket/conanfile.py
+++ b/pytket/conanfile.py
@@ -32,12 +32,12 @@ def package(self):
         cmake.install()
 
     def requirements(self):
-        self.requires("tket/1.2.87@tket/stable")
+        self.requires("tket/1.2.88@tket/stable")
         self.requires("tklog/0.3.3@tket/stable")
         self.requires("tkrng/0.3.3@tket/stable")
         self.requires("tkassert/0.3.4@tket/stable")
-        self.requires("tkwsm/0.3.6@tket/stable")
-        self.requires("tktokenswap/0.3.6@tket/stable")
+        self.requires("tkwsm/0.3.7@tket/stable")
+        self.requires("tktokenswap/0.3.7@tket/stable")
         self.requires("symengine/0.11.2")
         self.requires("gmp/6.3.0")
         self.requires("pybind11/2.11.1")
diff --git a/tket/conanfile.py b/tket/conanfile.py
index 9bc611d7ec..fcae34b554 100644
--- a/tket/conanfile.py
+++ b/tket/conanfile.py
@@ -23,7 +23,7 @@
 
 class TketConan(ConanFile):
     name = "tket"
-    version = "1.2.87"
+    version = "1.2.88"
     package_type = "library"
     license = "Apache 2"
     homepage = "https://github.com/CQCL/tket"
@@ -111,15 +111,15 @@ def package_info(self):
     def requirements(self):
         # libraries installed from remote:
         # https://quantinuumsw.jfrog.io/artifactory/api/conan/tket1-libs
-        self.requires("boost/1.83.0", transitive_headers=True)
+        self.requires("boost/1.84.0", transitive_headers=True)
         self.requires("symengine/0.11.2", transitive_headers=True)
         self.requires("eigen/3.4.0", transitive_headers=True)
         self.requires("nlohmann_json/3.11.3", transitive_headers=True)
         self.requires("tklog/0.3.3@tket/stable")
         self.requires("tkassert/0.3.4@tket/stable", transitive_headers=True)
         self.requires("tkrng/0.3.3@tket/stable")
-        self.requires("tktokenswap/0.3.6@tket/stable")
-        self.requires("tkwsm/0.3.6@tket/stable")
+        self.requires("tktokenswap/0.3.7@tket/stable")
+        self.requires("tkwsm/0.3.7@tket/stable")
         if self.build_test():
             self.test_requires("catch2/3.5.2")
         if self.build_proptest():

From dfadf94b784f54d5779635b48b274e16bad126e0 Mon Sep 17 00:00:00 2001
From: Alec Edgington <54802828+cqc-alec@users.noreply.github.com>
Date: Fri, 26 Jan 2024 13:39:11 +0000
Subject: [PATCH 10/17] [feature] Add method to get bytecode from a
 `WasmFileHandler` (#1235)

---
 pytket/docs/changelog.rst      | 7 +++++++
 pytket/pytket/wasm/wasm.py     | 6 ++++--
 pytket/tests/classical_test.py | 4 ++++
 3 files changed, 15 insertions(+), 2 deletions(-)

diff --git a/pytket/docs/changelog.rst b/pytket/docs/changelog.rst
index cd269c455f..fa638f0e9c 100644
--- a/pytket/docs/changelog.rst
+++ b/pytket/docs/changelog.rst
@@ -1,6 +1,13 @@
 Changelog
 =========
 
+Unreleased
+----------
+
+Features:
+
+* Add ``WasmFileHandler.bytecode()`` method to retrieve the WASM as bytecode.
+
 1.24.0 (January 2024)
 ---------------------
 
diff --git a/pytket/pytket/wasm/wasm.py b/pytket/pytket/wasm/wasm.py
index 45a651d4d1..bf4f57cd68 100644
--- a/pytket/pytket/wasm/wasm.py
+++ b/pytket/pytket/wasm/wasm.py
@@ -91,7 +91,6 @@ def __init__(self, filepath: str, check_file: bool = True, int_size: int = 32):
         self._unsupported_function = []
 
         if self._check_file:
-
             mod_iter = iter(decode_module(self._wasm_file))
             _, _ = next(mod_iter)
 
@@ -143,7 +142,6 @@ def __init__(self, filepath: str, check_file: bool = True, int_size: int = 32):
                     self._function_types = cur_sec_data.payload.types
 
             for x in function_names:
-
                 # check for only integer type in parameters and return values
                 supported_function = True
                 idx = _func_lookup[x][1]
@@ -214,6 +212,10 @@ def __repr__(self) -> str:
 wasm file was checked"""
             )
 
+    def bytecode(self) -> bytes:
+        """The WASM content as bytecode"""
+        return self._wasm_file
+
     def check_function(
         self, function_name: str, number_of_parameters: int, number_of_returns: int
     ) -> bool:
diff --git a/pytket/tests/classical_test.py b/pytket/tests/classical_test.py
index bf8ff4642a..9a6c24cf2f 100644
--- a/pytket/tests/classical_test.py
+++ b/pytket/tests/classical_test.py
@@ -178,6 +178,10 @@ def test_wasm_2() -> None:
 def test_wasm_3() -> None:
     w = wasm.WasmFileHandler("testfile.wasm")
 
+    with open("testfile.wasm", "rb") as f:
+        bytecode = f.read()
+    assert w.bytecode() == bytecode
+
     c = Circuit(0, 6)
 
     c.add_wasm("add_one", w, [1], [1], [Bit(0), Bit(1)])

From 590f78d29b7a273fe61142f6101187a9e884cbe6 Mon Sep 17 00:00:00 2001
From: Alec Edgington <54802828+cqc-alec@users.noreply.github.com>
Date: Mon, 29 Jan 2024 09:09:54 +0000
Subject: [PATCH 11/17] Only authenticate if necessary. (#1238)

---
 .github/workflows/build_libs.yml | 6 +++---
 .github/workflows/linuxbuildlib  | 3 +--
 2 files changed, 4 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/build_libs.yml b/.github/workflows/build_libs.yml
index 21a430f26e..9cc92183f1 100644
--- a/.github/workflows/build_libs.yml
+++ b/.github/workflows/build_libs.yml
@@ -83,8 +83,6 @@ jobs:
     - name: build shared ${{ matrix.lib }}
       if: matrix.lib == 'tklog'
       run: conan create -s build_type=${{ matrix.build_type }} -o boost/*:header_only=True -o ${{ matrix.lib }}/*:shared=True libs/${{ matrix.lib }} --build=missing --user=tket --channel=stable
-    - name: authenticate to repository
-      run: conan remote login -p ${{ secrets.JFROG_ARTIFACTORY_TOKEN_3 }} tket-libs ${{ secrets.JFROG_ARTIFACTORY_USER_3 }}
     - name: get version
       shell: bash
       run: |
@@ -92,7 +90,9 @@ jobs:
         echo "LIB_LABEL=${lib_label}" >> $GITHUB_ENV
     - name: upload package
       if: github.event_name == 'push'
-      run: conan upload ${{ env.LIB_LABEL }} -r=tket-libs
+      run: |
+        conan remote login -p ${{ secrets.JFROG_ARTIFACTORY_TOKEN_3 }} tket-libs ${{ secrets.JFROG_ARTIFACTORY_USER_3 }}
+        conan upload ${{ env.LIB_LABEL }} -r=tket-libs
   manylinux:
     name: build library (manylinux)
     needs: changes
diff --git a/.github/workflows/linuxbuildlib b/.github/workflows/linuxbuildlib
index b751530846..61475bb9fb 100755
--- a/.github/workflows/linuxbuildlib
+++ b/.github/workflows/linuxbuildlib
@@ -31,13 +31,12 @@ diff ${DEFAULT_PROFILE_PATH} ${PROFILE_PATH} || true
 cp ${PROFILE_PATH} ${DEFAULT_PROFILE_PATH}
 ${CONAN_CMD} remote add tket-libs https://quantinuumsw.jfrog.io/artifactory/api/conan/tket1-libs --index 0
 
-${CONAN_CMD} remote login -p ${JFROG_ARTIFACTORY_TOKEN_3} tket-libs ${JFROG_ARTIFACTORY_USER_3}
-
 ${CONAN_CMD} create ${TKLIB} -o boost/*:header_only=True --build=missing --user=tket --channel=stable --format json > ${TKLIB}.json
 
 LIB_LABEL=$(${PYBIN}/python ./libver ${TKLIB}.json ${TKLIB})
 
 if [ ${UPLOAD_PACKAGE} == "YES" ]
 then
+    ${CONAN_CMD} remote login -p ${JFROG_ARTIFACTORY_TOKEN_3} tket-libs ${JFROG_ARTIFACTORY_USER_3}
     ${CONAN_CMD} upload ${LIB_LABEL} -r=tket-libs
 fi

From a8dd7963aaf89561f5c3b2409074e21d1515ea2a Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 29 Jan 2024 09:32:37 +0000
Subject: [PATCH 12/17] Bump dorny/paths-filter from 2.11.1 to 3.0.0 (#1236)

Bumps [dorny/paths-filter](https://github.com/dorny/paths-filter) from 2.11.1 to 3.0.0.
- [Release notes](https://github.com/dorny/paths-filter/releases)
- [Changelog](https://github.com/dorny/paths-filter/blob/master/CHANGELOG.md)
- [Commits](https://github.com/dorny/paths-filter/compare/v2.11.1...v3.0.0)

---
updated-dependencies:
- dependency-name: dorny/paths-filter
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
---
 .github/workflows/build_and_test.yml | 2 +-
 .github/workflows/build_libs.yml     | 2 +-
 .github/workflows/coverage.yml       | 2 +-
 .github/workflows/test_libs.yml      | 2 +-
 .github/workflows/valgrind.yml       | 2 +-
 5 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/build_and_test.yml b/.github/workflows/build_and_test.yml
index efb15f79ec..10a102eca9 100644
--- a/.github/workflows/build_and_test.yml
+++ b/.github/workflows/build_and_test.yml
@@ -33,7 +33,7 @@ jobs:
     - uses: actions/setup-python@v5
       with:
         python-version: '3.12'
-    - uses: dorny/paths-filter@v2.11.1
+    - uses: dorny/paths-filter@v3.0.0
       id: filter
       with:
         base: ${{ github.ref }}
diff --git a/.github/workflows/build_libs.yml b/.github/workflows/build_libs.yml
index 9cc92183f1..3f0ce57d4b 100644
--- a/.github/workflows/build_libs.yml
+++ b/.github/workflows/build_libs.yml
@@ -20,7 +20,7 @@ jobs:
       libs: ${{ steps.filter.outputs.changes }}
     steps:
     - uses: actions/checkout@v4
-    - uses: dorny/paths-filter@v2.11.1
+    - uses: dorny/paths-filter@v3.0.0
       id: filter
       with:
         base: ${{ github.ref }}
diff --git a/.github/workflows/coverage.yml b/.github/workflows/coverage.yml
index ec4d2bc279..410f9105af 100644
--- a/.github/workflows/coverage.yml
+++ b/.github/workflows/coverage.yml
@@ -24,7 +24,7 @@ jobs:
       tket: ${{ steps.filter.outputs.tket }}
     steps:
     - uses: actions/checkout@v4
-    - uses: dorny/paths-filter@v2.11.1
+    - uses: dorny/paths-filter@v3.0.0
       id: filter
       with:
         base: ${{ github.ref }}
diff --git a/.github/workflows/test_libs.yml b/.github/workflows/test_libs.yml
index 1317a89c0e..e2e2864f6e 100644
--- a/.github/workflows/test_libs.yml
+++ b/.github/workflows/test_libs.yml
@@ -20,7 +20,7 @@ jobs:
       libs: ${{ steps.filter.outputs.changes }}
     steps:
     - uses: actions/checkout@v4
-    - uses: dorny/paths-filter@v2.11.1
+    - uses: dorny/paths-filter@v3.0.0
       id: filter
       with:
         base: ${{ github.ref }}
diff --git a/.github/workflows/valgrind.yml b/.github/workflows/valgrind.yml
index e6acc9a7aa..7d83830a8a 100644
--- a/.github/workflows/valgrind.yml
+++ b/.github/workflows/valgrind.yml
@@ -19,7 +19,7 @@ jobs:
       tket: ${{ steps.filter.outputs.tket }}
     steps:
     - uses: actions/checkout@v4
-    - uses: dorny/paths-filter@v2.11.1
+    - uses: dorny/paths-filter@v3.0.0
       id: filter
       with:
         base: ${{ github.ref }}

From 3e556dce5cb6defc473fb8d44607f81b71593491 Mon Sep 17 00:00:00 2001
From: CalMacCQ <93673602+CalMacCQ@users.noreply.github.com>
Date: Mon, 29 Jan 2024 11:48:20 +0000
Subject: [PATCH 13/17] Tidy up `pytket.circuit` API docs (#1178)

* don't clutter pytket.circuit docs by expanding submodules

* change caption

* use bysource order for autodoc

* start using automethod for Circuit methods

* fix typo

* use autodoc typehints

* Expand TOC for all pages

* add some circuit properties

* delete unused config settings

* add another chunk of automethod boilerplate

* finish adding circuit methods

* add some notes on Circuit.add_gate

* submodules -> classes

* scrub ._tket from pytket.circuit docs source

* remove more _tket

* don't use sphinx_autodoc_typehints for now

* remove non-existent Reset method

* use submodules rather than classes

* don't show binary info in pytket.circuit doc

* remove typehints extension entirely

* remove duplicate CV method

* remove more duplicate methods

* submodules -> classes

* reorder circuit properties

* remove duplicate properties

* remove :special-members: and use automethod for __init__ etc

* remove __hash__

* minor spacing edit

* Revert "minor spacing edit"

This reverts commit abe76a49c9186f2f202b85e4b5058977fb7e658a.

* add missing methods found by python script

* use autoproperty for created_qubits and discarded_qubits

* add script to check circuit methods and properties

* fix typo

* remove comment

* fix spaxing and heading

* consistent headings

* remove some dunder methods from API docs

* add __rshift__ dunder method back into the docs

* add explanatory comments

* remove spaces
---
 pytket/docs/check_circuit_class_docs.py |  16 +
 pytket/docs/circuit.rst                 |  76 ++---
 pytket/docs/circuit_class.rst           | 374 +++++++++++++++++++++++-
 pytket/docs/conf.py                     |  73 +----
 4 files changed, 424 insertions(+), 115 deletions(-)
 create mode 100644 pytket/docs/check_circuit_class_docs.py

diff --git a/pytket/docs/check_circuit_class_docs.py b/pytket/docs/check_circuit_class_docs.py
new file mode 100644
index 0000000000..816bc4c35d
--- /dev/null
+++ b/pytket/docs/check_circuit_class_docs.py
@@ -0,0 +1,16 @@
+import inspect
+import re
+
+from pytket._tket.circuit import Circuit
+
+# This script is used to check that no methods or properties of
+# the Circuit class are left out in the circuit_class.rst file.
+
+with open("circuit_class.rst", "r", encoding="utf-8") as file:
+    rst = file.read()
+
+in_methods = {p[0] for p in inspect.getmembers(Circuit)}
+pattern = re.compile(r"(?:\bautomethod\b|\bautoproperty\b):: (\w+)\n")
+in_docs = set(pattern.findall(rst))
+missing = in_methods - in_docs
+print([s for s in missing if not s.startswith("_")])
diff --git a/pytket/docs/circuit.rst b/pytket/docs/circuit.rst
index 3c2418ba97..6352657c5e 100644
--- a/pytket/docs/circuit.rst
+++ b/pytket/docs/circuit.rst
@@ -2,7 +2,7 @@ pytket.circuit
 ==================================
 .. toctree::
    :caption: Classes:
-   :maxdepth: 2
+   :maxdepth: 1
 
    circuit_class.rst
    optype.rst
@@ -14,106 +14,106 @@ pytket.circuit
 
 .. automodule:: pytket._tket.circuit
     :members: fresh_symbol
-.. autoclass:: pytket._tket.circuit.Op
+.. autoclass:: pytket.circuit.Op
     :members:
-.. autoclass:: pytket._tket.circuit.Command
+.. autoclass:: pytket.circuit.Command
     :members:
-.. autoclass:: pytket._tket.circuit.BasisOrder
+.. autoclass:: pytket.circuit.BasisOrder
     :members:
-.. autoclass:: pytket._tket.circuit.CXConfigType
+.. autoclass:: pytket.circuit.CXConfigType
     :members:
-.. autoclass:: pytket._tket.circuit.CircBox
+.. autoclass:: pytket.circuit.CircBox
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.Unitary1qBox
+.. autoclass:: pytket.circuit.Unitary1qBox
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.Unitary2qBox
+.. autoclass:: pytket.circuit.Unitary2qBox
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.Unitary3qBox
+.. autoclass:: pytket.circuit.Unitary3qBox
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.ExpBox
+.. autoclass:: pytket.circuit.ExpBox
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.PauliExpBox
+.. autoclass:: pytket.circuit.PauliExpBox
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.PauliExpPairBox
+.. autoclass:: pytket.circuit.PauliExpPairBox
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.ToffoliBox
+.. autoclass:: pytket.circuit.ToffoliBox
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.QControlBox
+.. autoclass:: pytket.circuit.QControlBox
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.CustomGateDef
+.. autoclass:: pytket.circuit.CustomGateDef
     :members:
-.. autoclass:: pytket._tket.circuit.CustomGate
+.. autoclass:: pytket.circuit.CustomGate
     :members:
-.. autoclass:: pytket._tket.circuit.Conditional
+.. autoclass:: pytket.circuit.Conditional
     :members:
-.. autoclass:: pytket._tket.circuit.ClassicalExpBox
+.. autoclass:: pytket.circuit.ClassicalExpBox
     :members:
-.. autoclass:: pytket._tket.circuit.PhasePolyBox
+.. autoclass:: pytket.circuit.PhasePolyBox
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.ProjectorAssertionBox
+.. autoclass:: pytket.circuit.ProjectorAssertionBox
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.StabiliserAssertionBox
+.. autoclass:: pytket.circuit.StabiliserAssertionBox
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.WASMOp
+.. autoclass:: pytket.circuit.WASMOp
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.MultiBitOp
+.. autoclass:: pytket.circuit.MultiBitOp
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.SetBitsOp
+.. autoclass:: pytket.circuit.SetBitsOp
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.ClassicalEvalOp
+.. autoclass:: pytket.circuit.ClassicalEvalOp
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.ClassicalOp
+.. autoclass:: pytket.circuit.ClassicalOp
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.CopyBitsOp
+.. autoclass:: pytket.circuit.CopyBitsOp
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.RangePredicateOp
+.. autoclass:: pytket.circuit.RangePredicateOp
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.MultiplexorBox
+.. autoclass:: pytket.circuit.MultiplexorBox
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.MultiplexedRotationBox
+.. autoclass:: pytket.circuit.MultiplexedRotationBox
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.MultiplexedU2Box
+.. autoclass:: pytket.circuit.MultiplexedU2Box
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.MultiplexedTensoredU2Box
+.. autoclass:: pytket.circuit.MultiplexedTensoredU2Box
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.StatePreparationBox
+.. autoclass:: pytket.circuit.StatePreparationBox
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.DiagonalBox
+.. autoclass:: pytket.circuit.DiagonalBox
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.ConjugationBox
+.. autoclass:: pytket.circuit.ConjugationBox
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.ResourceBounds
+.. autoclass:: pytket.circuit.ResourceBounds
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.ResourceData
+.. autoclass:: pytket.circuit.ResourceData
     :special-members:
     :members:
-.. autoclass:: pytket._tket.circuit.DummyBox
+.. autoclass:: pytket.circuit.DummyBox
     :special-members:
     :members:
\ No newline at end of file
diff --git a/pytket/docs/circuit_class.rst b/pytket/docs/circuit_class.rst
index ea7da61904..d92aefe7e6 100644
--- a/pytket/docs/circuit_class.rst
+++ b/pytket/docs/circuit_class.rst
@@ -1,5 +1,5 @@
 pytket.circuit.Circuit
-==================================
+======================
 :py:class:`Circuit` objects provide an abstraction of quantum circuits. They consist of a set of qubits/quantum wires and a collection of operations applied to them in a given order. These wires have open inputs and outputs, rather than assuming any fixed input state.
 
 See the `pytket User Manual <https://tket.quantinuum.com/user-manual/manual_circuit.html>`_ for a step-by-step tutorial on constructing circuits.
@@ -20,7 +20,371 @@ following keyword arguments are supported:
 ``condition``, or using the pair ``condition_bits`` and ``condition_value`` to
 condition on a specified set of bit values.)
 
-.. currentmodule:: pytket._tket.circuit.Circuit
-.. autoclass:: pytket._tket.circuit.Circuit
-   :special-members:
-   :members:
+..
+   Sphinx doesn't seem to offer much control over how the methods and properties are ordered in the docs
+   We list the methods and properties manually (for now) to ensure that the most important methods (e.g. Circuit.add_gate) 
+   are closer to the top of the page. Some less important methods like Circuit.YYPhase
+   and Circuit.add_multiplexed_tensored_u2 are near the bottom.
+   Since the Circuit class is so big we use the check_circuit_class_docs.py script to check that we haven't missed anything. 
+
+.. currentmodule:: pytket.circuit.Circuit
+.. autoclass:: pytket.circuit.Circuit
+
+   .. automethod:: __init__
+   
+   .. automethod:: __iter__
+
+   .. automethod:: __rshift__
+
+   .. automethod:: add_gate
+
+   .. automethod:: append
+
+   .. automethod:: add_circuit
+
+   .. automethod:: add_qubit
+
+   .. automethod:: add_bit
+
+   .. automethod:: add_phase
+
+   .. autoproperty:: name
+
+   .. autoproperty:: n_qubits
+
+   .. autoproperty:: n_bits
+
+   .. autoproperty:: phase
+
+   .. autoproperty:: qubits
+
+   .. autoproperty:: bits
+
+   .. autoproperty:: n_gates
+
+   .. autoproperty:: is_symbolic
+
+   .. automethod:: add_q_register
+
+   .. automethod:: get_q_register
+
+   .. automethod:: add_c_register
+
+   .. automethod:: get_c_register
+
+   .. autoproperty:: q_registers
+
+   .. autoproperty:: c_registers
+
+   .. automethod:: rename_units
+
+   .. automethod:: add_blank_wires
+
+   .. automethod:: remove_blank_wires
+
+   .. automethod:: flatten_registers
+
+   .. autoproperty:: qubit_readout
+
+   .. autoproperty:: bit_readout
+
+   .. autoproperty:: opgroups
+
+   .. autoproperty:: is_simple
+
+   .. autoproperty:: qubit_to_bit_map
+
+   .. automethod:: commands_of_type
+
+   .. automethod:: ops_of_type
+
+   .. automethod:: n_gates_of_type
+
+   .. automethod:: n_1qb_gates
+
+   .. automethod:: n_2qb_gates
+
+   .. automethod:: n_nqb_gates
+
+   .. automethod:: free_symbols
+
+   .. automethod:: symbol_substitution
+
+   .. automethod:: substitute_named
+
+   .. automethod:: depth
+
+   .. automethod:: depth_2q
+
+   .. automethod:: depth_by_type
+
+   .. automethod:: get_commands
+
+   .. automethod:: add_barrier
+
+   .. automethod:: add_conditional_barrier
+
+   .. automethod:: add_wasm
+
+   .. automethod:: add_wasm_to_reg
+
+   .. automethod:: from_dict
+
+   .. automethod:: to_dict
+
+   .. automethod:: get_statevector
+
+   .. automethod:: get_unitary
+
+   .. automethod:: get_unitary_times_other
+
+   .. automethod:: dagger
+
+   .. automethod:: transpose
+
+   .. automethod:: copy
+
+   .. automethod:: get_resources
+
+   .. automethod:: add_c_and
+
+   .. automethod:: add_c_not
+
+   .. automethod:: add_c_or
+
+   .. automethod:: add_c_xor
+   
+   .. automethod:: add_c_range_predicate
+
+   .. automethod:: add_c_and_to_registers
+
+   .. automethod:: add_c_or_to_registers
+
+   .. automethod:: add_c_xor_to_registers
+
+   .. automethod:: add_c_not_to_registers
+
+   .. automethod:: add_c_copybits
+
+   .. automethod:: add_c_copyreg
+
+   .. automethod:: add_c_setreg
+
+   .. automethod:: add_c_setbits
+
+   .. automethod:: add_c_transform
+
+   .. automethod:: add_c_modifier
+      
+   .. automethod:: add_c_predicate
+
+   .. automethod:: add_classicalexpbox_bit
+
+   .. automethod:: add_classicalexpbox_register
+
+   .. automethod:: qubit_create
+
+   .. automethod:: qubit_create_all
+
+   .. automethod:: qubit_discard
+
+   .. automethod:: qubit_discard_all
+
+   .. automethod:: qubit_is_created
+   
+   .. automethod:: qubit_is_discarded
+
+   .. autoproperty:: created_qubits
+
+   .. autoproperty:: discarded_qubits
+
+   .. autoproperty:: valid_connectivity
+   
+   .. automethod:: replace_SWAPs
+
+   .. automethod:: replace_implicit_wire_swaps
+
+   .. automethod:: implicit_qubit_permutation
+
+   .. automethod:: to_latex_file
+
+
+   Convenience methods for appending gates
+   ---------------------------------------
+
+   .. Note:: For adding gates to a circuit the :py:meth:`Circuit.add_gate` method is sufficient to append any :py:class:`OpType` to a :py:class:`Circuit`. 
+      Some gates can only be added with :py:meth:`Circuit.add_gate`. For other more commonly used operations these can be added to a :py:class:`Circuit` directly using the convenience methods below.
+
+   .. automethod:: H
+
+   .. automethod:: X
+
+   .. automethod:: Y
+
+   .. automethod:: Z
+
+   .. automethod:: S
+
+   .. automethod:: Sdg
+
+   .. automethod:: SX
+
+   .. automethod:: SXdg
+
+   .. automethod:: T
+
+   .. automethod:: Tdg
+
+   .. automethod:: V
+
+   .. automethod:: Vdg
+
+   .. automethod:: Rx
+
+   .. automethod:: Ry
+
+   .. automethod:: Rz
+
+   .. automethod:: PhasedX
+
+   .. automethod:: TK1
+
+   .. automethod:: TK2
+
+   .. automethod:: U1
+
+   .. automethod:: U2
+   
+   .. automethod:: U3
+
+   .. automethod:: CX
+
+   .. automethod:: CY
+
+   .. automethod:: CZ
+
+   .. automethod:: CS
+
+   .. automethod:: CSdg
+
+   .. automethod:: CV
+
+   .. automethod:: CVdg
+
+   .. automethod:: CSX
+
+   .. automethod:: CSXdg
+
+   .. automethod:: CH
+
+   .. automethod:: ECR
+
+   .. automethod:: CRx
+
+   .. automethod:: CRy
+
+   .. automethod:: CRz
+
+   .. automethod:: CU1
+
+   .. automethod:: CU3
+
+   .. automethod:: Measure
+
+   .. automethod:: measure_all
+
+   .. automethod:: measure_register
+
+   .. automethod:: Reset
+
+   .. automethod:: Phase
+   
+   .. automethod:: SWAP
+
+   .. automethod:: CCX
+
+   .. automethod:: CSWAP
+
+   .. automethod:: ESWAP
+
+   .. automethod:: ISWAP
+
+   .. automethod:: ISWAPMax
+   
+   .. automethod:: PhasedISWAP
+
+   .. automethod:: FSim
+
+   .. automethod:: Sycamore
+   
+   .. automethod:: XXPhase
+
+   .. automethod:: XXPhase3
+
+   .. automethod:: YYPhase
+
+   .. automethod:: ZZPhase
+
+   .. automethod:: ZZMax
+
+   Methods for appending circuit boxes
+   -----------------------------------
+
+   .. Note:: For adding boxes to a circuit the :py:meth:`Circuit.add_gate` method is sufficient to append any :py:class:`OpType` to a :py:class:`Circuit`.
+
+   .. jupyter-input::
+
+      from pytket.circuit import Circuit, CircBox
+     
+      sub_circ = Circuit(2).CX(0, 1).Rz(0.25, 1).CX(0, 1)
+
+      box = CircBox(sub_circ)
+
+      bigger_circ = Circuit(3)
+
+      # Equivalent to bigger_circ.add_circbox(box, [0, 1, 2])
+      bigger_circ.add_gate(box, [0, 1, 2])
+
+   .. automethod:: add_circbox
+
+   .. automethod:: add_unitary1qbox
+   
+   .. automethod:: add_unitary2qbox
+   
+   .. automethod:: add_unitary3qbox
+
+   .. automethod:: add_expbox
+
+   .. automethod:: add_pauliexpbox
+
+   .. automethod:: add_pauliexppairbox
+
+   .. automethod:: add_pauliexpcommutingsetbox
+
+   .. automethod:: add_phasepolybox
+
+   .. automethod:: add_toffolibox
+   
+   .. automethod:: add_dummybox
+
+   .. automethod:: add_qcontrolbox
+   
+   .. automethod:: add_custom_gate
+
+   .. automethod:: add_assertion
+
+   .. automethod:: add_multiplexor
+
+   .. automethod:: add_multiplexedrotation
+   
+   .. automethod:: add_multiplexedu2
+
+   .. automethod:: add_multiplexed_tensored_u2
+      
+   .. automethod:: add_state_preparation_box
+
+   .. automethod:: add_diagonal_box
+
+   .. automethod:: add_conjugation_box
+   
+
diff --git a/pytket/docs/conf.py b/pytket/docs/conf.py
index d4f64dcd24..a0623689b1 100644
--- a/pytket/docs/conf.py
+++ b/pytket/docs/conf.py
@@ -99,6 +99,7 @@
 #
 
 html_theme_options = {
+    "show_toc_level": 2,
     "repository_url": "https://github.com/CQCL/tket",
     "use_repository_button": True,
     "use_issues_button": True,
@@ -132,78 +133,6 @@
 # Output file base name for HTML help builder.
 htmlhelp_basename = "pytketdoc"
 
-
-# -- Options for LaTeX output ------------------------------------------------
-
-latex_elements = {
-    # The paper size ('letterpaper' or 'a4paper').
-    #
-    # 'papersize': 'letterpaper',
-    # The font size ('10pt', '11pt' or '12pt').
-    #
-    # 'pointsize': '10pt',
-    # Additional stuff for the LaTeX preamble.
-    #
-    # 'preamble': '',
-    # Latex figure (float) alignment
-    #
-    # 'figure_align': 'htbp',
-}
-
-# Grouping the document tree into LaTeX files. List of tuples
-# (source start file, target name, title,
-#  author, documentclass [howto, manual, or own class]).
-latex_documents = [
-    (
-        master_doc,
-        "pytket.tex",
-        "pytket Documentation",
-        "Cambridge Quantum Computing Ltd",
-        "manual",
-    ),
-]
-
-
-# -- Options for manual page output ------------------------------------------
-
-# One entry per manual page. List of tuples
-# (source start file, name, description, authors, manual section).
-man_pages = [(master_doc, "pytket", "pytket Documentation", [author], 1)]
-
-
-# -- Options for Texinfo output ----------------------------------------------
-
-# Grouping the document tree into Texinfo files. List of tuples
-# (source start file, target name, title, author,
-#  dir menu entry, description, category)
-texinfo_documents = [
-    (
-        master_doc,
-        "pytket",
-        "pytket Documentation",
-        author,
-        "pytket",
-        "Python API for CQC's tket compiler",
-        "Miscellaneous",
-    ),
-]
-
-
-# -- Options for Epub output -------------------------------------------------
-
-# Bibliographic Dublin Core info.
-epub_title = project
-
-# The unique identifier of the text. This can be a ISBN number
-# or the project homepage.
-#
-# epub_identifier = ''
-
-# A unique identification for the text.
-#
-# epub_uid = ''
-
-# A list of files that should not be packed into the epub file.
 epub_exclude_files = ["search.html"]
 
 autodoc_member_order = "groupwise"

From 03860de0382caf6a2b6b9c3a566636c6306855f2 Mon Sep 17 00:00:00 2001
From: Alec Edgington <54802828+cqc-alec@users.noreply.github.com>
Date: Fri, 2 Feb 2024 15:19:44 +0000
Subject: [PATCH 14/17] Revert "Don't try to install ZX module with Python
 3.12. (#1203)" (#1241)

---
 .github/workflows/build_and_test.yml | 30 +++++++++-------------------
 1 file changed, 9 insertions(+), 21 deletions(-)

diff --git a/.github/workflows/build_and_test.yml b/.github/workflows/build_and_test.yml
index 10a102eca9..981a5a8945 100644
--- a/.github/workflows/build_and_test.yml
+++ b/.github/workflows/build_and_test.yml
@@ -279,7 +279,7 @@ jobs:
         cd pytket
         pip install -e .[ZX] -v
     - name: Build pytket
-      if: github.event_name == 'schedule' # https://github.com/CQCL/tket/issues/1200
+      if: github.event_name == 'schedule' # https://github.com/CQCL/tket/issues/1242
       run: |
         cd pytket
         pip install -e . -v
@@ -387,34 +387,28 @@ jobs:
       with:
         python-version: '3.12'
     - name: Build pytket
-      if: github.event_name != 'schedule'
       run: |
         cd pytket
-        python${{ matrix.python-version }} -m pip install -e .[ZX] -v
-    - name: Build pytket
-      if: github.event_name == 'schedule' # https://github.com/CQCL/tket/issues/1200
-      run: |
-        cd pytket
-        python${{ matrix.python-version }} -m pip install -e . -v
+        python -m pip install -e .[ZX] -v
     - name: Run doctests
       run: |
         cd pytket
-        python${{ matrix.python-version }} -m pip install pytest
-        python${{ matrix.python-version }} -m pytest --doctest-modules pytket
+        python -m pip install pytest
+        python -m pytest --doctest-modules pytket
     - name: Test pytket
       run: |
         cd pytket/tests
-        python${{ matrix.python-version }} -m pip install -r requirements.txt
-        python${{ matrix.python-version }} -m pytest --ignore=simulator/
+        python -m pip install -r requirements.txt
+        python -m pytest --ignore=simulator/
     - name: Check type stubs are up-to-date and run mypy
       if: matrix.os == 'macos-13-xlarge' && (github.event_name == 'pull_request' || github.event_name == 'workflow_dispatch')
       run: |
-        python${{ matrix.python-version }} -m pip install -U mypy
-        python${{ matrix.python-version }} -m pip install pybind11-stubgen==2.3.6 # https://github.com/CQCL/tket/issues/1135
+        python -m pip install -U mypy
+        python -m pip install pybind11-stubgen==2.3.6 # https://github.com/CQCL/tket/issues/1135
         cd pytket
         ./stub_generation/regenerate_stubs
         git diff --quiet pytket/_tket && echo "Stubs are up-to-date" || exit 1  # fail if stubs change after regeneration
-        python${{ matrix.python-version }} -m mypy --config-file=mypy.ini --no-incremental -p pytket -p tests
+        python -m mypy --config-file=mypy.ini --no-incremental -p pytket -p tests
     - name: Upload package
       if: github.event_name == 'push' && github.ref == 'refs/heads/develop' && needs.check_changes.outputs.tket_changed == 'true'
       run: |
@@ -514,15 +508,9 @@ jobs:
       with:
         python-version: '3.12'
     - name: Build pytket
-      if: github.event_name != 'schedule'
       run: |
         cd pytket
         pip install -e .[ZX] -v
-    - name: Build pytket
-      if: github.event_name == 'schedule' # https://github.com/CQCL/tket/issues/1200
-      run: |
-        cd pytket
-        pip install -e . -v
     - name: Run doctests
       run: |
         cd pytket

From c5a7106d60ca9c5e8b2a622b72619849291bcb72 Mon Sep 17 00:00:00 2001
From: Alec Edgington <54802828+cqc-alec@users.noreply.github.com>
Date: Fri, 9 Feb 2024 11:25:00 +0000
Subject: [PATCH 15/17] [infra] Fix build command on Windows (#1247)

---
 .github/workflows/build_and_test.yml | 2 +-
 .github/workflows/release.yml        | 2 +-
 pytket/conanfile.py                  | 2 +-
 tket/conanfile.py                    | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/build_and_test.yml b/.github/workflows/build_and_test.yml
index 981a5a8945..95530abafb 100644
--- a/.github/workflows/build_and_test.yml
+++ b/.github/workflows/build_and_test.yml
@@ -481,7 +481,7 @@ jobs:
       run: |
         $env:TKET_VSGEN_CCACHE_EXE = '${{ steps.ccache-path.outputs.ccache_path }}'
         conan build tket --user tket --channel stable -o boost/*:header_only=True -o tklog/*:shared=True -o tket/*:shared=True
-        conan export-pkg tket --user tket --channel stable -o boost/*:header_only=True -o tklog/*:shared=True -o tket/*:shared=True -tf `"`"
+        conan export-pkg tket --user tket --channel stable -o boost/*:header_only=True -o tklog/*:shared=True -o tket/*:shared=True -tf ""
     - name: Install tket
       if: needs.check_changes.outputs.tket_changed != 'true'
       run: conan install --requires tket/${{ needs.check_changes.outputs.tket_ver }}@tket/stable -o boost/*:header_only=True -o tklog/*:shared=True -o tket/*:shared=True
diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml
index a02458d5cb..d247b1f44b 100644
--- a/.github/workflows/release.yml
+++ b/.github/workflows/release.yml
@@ -169,7 +169,7 @@ jobs:
         cp ${PROFILE_PATH} ${DEFAULT_PROFILE_PATH}
         conan remote add tket-libs https://quantinuumsw.jfrog.io/artifactory/api/conan/tket1-libs --index 0
     - name: Build tket
-      run: conan create tket --user tket --channel stable --build=missing -o boost/*:header_only=True -o tklog/*:shared=True -o tket/*:shared=True -tf `"`"
+      run: conan create tket --user tket --channel stable --build=missing -o boost/*:header_only=True -o tklog/*:shared=True -o tket/*:shared=True -tf ""
     - name: Set up Python ${{ matrix.python-version }}
       uses: actions/setup-python@v5
       with:
diff --git a/pytket/conanfile.py b/pytket/conanfile.py
index 95728ed3a1..cd8d59b8b3 100644
--- a/pytket/conanfile.py
+++ b/pytket/conanfile.py
@@ -32,7 +32,7 @@ def package(self):
         cmake.install()
 
     def requirements(self):
-        self.requires("tket/1.2.88@tket/stable")
+        self.requires("tket/1.2.89@tket/stable")
         self.requires("tklog/0.3.3@tket/stable")
         self.requires("tkrng/0.3.3@tket/stable")
         self.requires("tkassert/0.3.4@tket/stable")
diff --git a/tket/conanfile.py b/tket/conanfile.py
index fcae34b554..0864fe494b 100644
--- a/tket/conanfile.py
+++ b/tket/conanfile.py
@@ -23,7 +23,7 @@
 
 class TketConan(ConanFile):
     name = "tket"
-    version = "1.2.88"
+    version = "1.2.89"
     package_type = "library"
     license = "Apache 2"
     homepage = "https://github.com/CQCL/tket"

From fc89c70dc2c57f6617f6297946ab2935b9f07bbd Mon Sep 17 00:00:00 2001
From: Alec Edgington <54802828+cqc-alec@users.noreply.github.com>
Date: Fri, 9 Feb 2024 16:19:44 +0000
Subject: [PATCH 16/17] [bugfix] Don't reuse "stale" Pauli stabilizers when
 generating Pauli graphs (#1245)

---
 pytket/conanfile.py                 |  2 +-
 pytket/docs/changelog.rst           |  5 +++++
 tket/conanfile.py                   |  2 +-
 tket/src/PauliGraph/PauliGraph.cpp  |  5 +++--
 tket/test/src/test_CompilerPass.cpp | 13 +++++++++++++
 5 files changed, 23 insertions(+), 4 deletions(-)

diff --git a/pytket/conanfile.py b/pytket/conanfile.py
index cd8d59b8b3..4a3873aa34 100644
--- a/pytket/conanfile.py
+++ b/pytket/conanfile.py
@@ -32,7 +32,7 @@ def package(self):
         cmake.install()
 
     def requirements(self):
-        self.requires("tket/1.2.89@tket/stable")
+        self.requires("tket/1.2.90@tket/stable")
         self.requires("tklog/0.3.3@tket/stable")
         self.requires("tkrng/0.3.3@tket/stable")
         self.requires("tkassert/0.3.4@tket/stable")
diff --git a/pytket/docs/changelog.rst b/pytket/docs/changelog.rst
index fa638f0e9c..e7e6e851b5 100644
--- a/pytket/docs/changelog.rst
+++ b/pytket/docs/changelog.rst
@@ -8,6 +8,11 @@ Features:
 
 * Add ``WasmFileHandler.bytecode()`` method to retrieve the WASM as bytecode.
 
+Fixes:
+
+* Fix bug in ``PauliExponentials()`` pass affecting circuits containing
+  ``PhasedX`` gates containing Clifford angles.
+
 1.24.0 (January 2024)
 ---------------------
 
diff --git a/tket/conanfile.py b/tket/conanfile.py
index 0864fe494b..0c6e9481f5 100644
--- a/tket/conanfile.py
+++ b/tket/conanfile.py
@@ -23,7 +23,7 @@
 
 class TketConan(ConanFile):
     name = "tket"
-    version = "1.2.89"
+    version = "1.2.90"
     package_type = "library"
     license = "Apache 2"
     homepage = "https://github.com/CQCL/tket"
diff --git a/tket/src/PauliGraph/PauliGraph.cpp b/tket/src/PauliGraph/PauliGraph.cpp
index a6ec0fcae6..abd2a8b42c 100644
--- a/tket/src/PauliGraph/PauliGraph.cpp
+++ b/tket/src/PauliGraph/PauliGraph.cpp
@@ -163,8 +163,6 @@ void PauliGraph::apply_gate_at_end(
     case OpType::PhasedX: {
       Expr alpha = gate.get_params().at(0);
       Expr beta = gate.get_params().at(1);
-      SpPauliStabiliser zpauli = cliff_.get_zrow(qbs.at(0));
-      SpPauliStabiliser xpauli = cliff_.get_xrow(qbs.at(0));
       std::optional<unsigned> cliff_alpha = equiv_Clifford(alpha);
       std::optional<unsigned> cliff_beta = equiv_Clifford(beta);
       // Rz(-b)
@@ -173,6 +171,7 @@ void PauliGraph::apply_gate_at_end(
           cliff_.apply_gate_at_end(OpType::Sdg, qbs);
         }
       } else {
+        SpPauliStabiliser zpauli = cliff_.get_zrow(qbs.at(0));
         apply_pauli_gadget_at_end(zpauli, -beta);
       }
       // Rx(a)
@@ -181,6 +180,7 @@ void PauliGraph::apply_gate_at_end(
           cliff_.apply_gate_at_end(OpType::V, qbs);
         }
       } else {
+        SpPauliStabiliser xpauli = cliff_.get_xrow(qbs.at(0));
         apply_pauli_gadget_at_end(xpauli, alpha);
       }
       // Rz(b)
@@ -189,6 +189,7 @@ void PauliGraph::apply_gate_at_end(
           cliff_.apply_gate_at_end(OpType::S, qbs);
         }
       } else {
+        SpPauliStabiliser zpauli = cliff_.get_zrow(qbs.at(0));
         apply_pauli_gadget_at_end(zpauli, beta);
       }
       break;
diff --git a/tket/test/src/test_CompilerPass.cpp b/tket/test/src/test_CompilerPass.cpp
index 5106e5cfc5..43ed4d4b46 100644
--- a/tket/test/src/test_CompilerPass.cpp
+++ b/tket/test/src/test_CompilerPass.cpp
@@ -2026,5 +2026,18 @@ SCENARIO(
     REQUIRE(cu.get_circ_ref().n_gates() == 1);
   }
 }
+
+SCENARIO("PauliExponentials") {
+  GIVEN("A PhasedX gate") {
+    // https://github.com/CQCL/tket/issues/1244
+    Circuit c(1);
+    c.add_op<unsigned>(OpType::PhasedX, {0.5, 0.6}, {0});
+    c.add_op<unsigned>(OpType::PhasedX, {0.6, 0.5}, {0});
+    CompilationUnit cu(c);
+    CHECK(gen_pauli_exponentials(Transforms::PauliSynthStrat::Individual)
+              ->apply(cu));
+    REQUIRE(test_unitary_comparison(c, cu.get_circ_ref(), true));
+  }
+}
 }  // namespace test_CompilerPass
 }  // namespace tket

From f3edf410b804e7057901c18a30f07cf8ae650958 Mon Sep 17 00:00:00 2001
From: Alec Edgington <alec.edgington@quantinuum.com>
Date: Fri, 9 Feb 2024 16:25:03 +0000
Subject: [PATCH 17/17] Update version and changelog.

---
 pytket/docs/changelog.rst | 4 ++--
 pytket/docs/conf.py       | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/pytket/docs/changelog.rst b/pytket/docs/changelog.rst
index e7e6e851b5..1b13d9c9cc 100644
--- a/pytket/docs/changelog.rst
+++ b/pytket/docs/changelog.rst
@@ -1,8 +1,8 @@
 Changelog
 =========
 
-Unreleased
-----------
+1.25.0 (February 2024)
+----------------------
 
 Features:
 
diff --git a/pytket/docs/conf.py b/pytket/docs/conf.py
index a0623689b1..b25bb0c302 100644
--- a/pytket/docs/conf.py
+++ b/pytket/docs/conf.py
@@ -38,9 +38,9 @@
 author = "Quantinuum"
 
 # The short X.Y version
-version = "1.24"
+version = "1.25"
 # The full version, including alpha/beta/rc tags
-release = "1.24.0"
+release = "1.25.0"
 
 
 # -- General configuration ---------------------------------------------------