-
Notifications
You must be signed in to change notification settings - Fork 6
/
mkdocs.yml
83 lines (80 loc) · 4.04 KB
/
mkdocs.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
site_name: MassIVE Documentation
edit_uri: 'https://github.com/CCMS-UCSD/MassIVEDocumentation/blob/master/docs/'
nav:
- MassIVE Introduction: index.md
- Policy:
- MassIVE/GNPS Fair Use Policy: fair_use_policy.md
- Fair Use Policy FAQ: fair_use_policy_faq.md
- User File Management: user_file_management.md
- MassIVE:
- Account Registration: account_registration.md
- Data Upload: upload_data.md
- Submit Data to MassIVE:
- Submit Data: submit_data.md
- Dataset Submission Workflow: submission_workflow.md
- Reviewer Access: reviewer_access.md
- Make Public: make_public.md
- Add/Update Metadata: add_update_metadata.md
- Add Publication: add_publication.md
- Download Dataset Files: download_data.md
- Share Reanalyses: share_reanalyses.md
- Automated Conversion: conversion.md
- Reanalyze Spectra: reanalyze_spectra.md
- Access Public Datasets: access_public_datasets.md
- Search Identifications: search_identifications.md
- MassIVE.quant:
- Introduction: quant/0_massive_quant.md
- Required files: quant/0_prepare_required_files.md
- Level of curation: quant/0_level_reviewing.md
- Submit Quant Reanalysis:
- Submit Quant Reanalysis: quant/1_submit_quant_0_submit_quant.md
- Step1 - Upload Data : quant/1_submit_quant_1_upload_data.md
- Step2 - Add Reanalysis : quant/1_submit_quant_2_add_reanalysis.md
- Access Quant Reanalysis:
- Reanalysis webpage : quant/2_access_quant_3_reanalysis.md
- Container webpage : quant/2_access_quant_2_container.md
- Dataset webpage : quant/2_access_quant_1_dataset.md
- Browse files : quant/2_browse_files.md
- Download files : quant/2_download_files.md
- Run MSstats Workflow:
- Step1 - Upload Data : quant/3_msstats_workflow_1_upload_data.md
- Step2 - MSstats Workflow: quant/3_msstats_workflow_2_run.md
- Step3 - Submit Result: quant/3_msstats_workflow_3_submit.md
- Comparison Workflow:
- Compare MSstats Result : quant/4_msstats_comparison.md
- Run Maxquant Workflow:
- Step1 - Input Files: quant/5_maxquant_workflow_1_upload_data.md
- Step2 - Parameter Setup: quant/5_maxquant_workflow_2_parameter_setup.md
- Step3 - View and Download Result: quant/5_maxquant_workflow_3_view_result.md
- Run MSGF+ Workflow:
- Step1 - Input Files: quant/6_msgf_workflow_1_upload_data.md
- Step2 - Setup Parameters: quant/6_msgf_workflow_2_setup_parameters.md
- Step3 - View and Download Result: quant/6_msgf_workflow_3_view_and_download_results.md
- MassIVE-KB: massivekb.md
- CoronaMassKB:
- Introduction: CoronaMassKB/0_CoronaMassKB.md
- Share Identification Reanalysis: share_reanalyses.md
- File Formats: quant-corona/quant_file_formats.md
- Share Quant Reanalysis:
- Submit Quant Reanalysis: quant-corona/1_submit_quant_0_submit_quant.md
- Step1 - Upload Data : quant-corona/1_submit_quant_1_upload_data.md
- Step2 - Add Reanalysis : quant-corona/1_submit_quant_2_add_reanalysis.md
- Access Quant Reanalysis:
- Reanalysis webpage : quant-corona/2_access_quant_3_reanalysis.md
- Container webpage : quant-corona/2_access_quant_2_container.md
- Dataset webpage : quant-corona/2_access_quant_1_dataset.md
- Browse files : quant-corona/2_browse_files.md
- Download files : quant-corona/2_download_files.md
- Run MSstats Workflow:
- Step1 - Upload Data : quant-corona/3_msstats_workflow_1_upload_data.md
- Step2 - MSstats Workflow: quant-corona/3_msstats_workflow_2_run.md
- Step3 - Submit Result: quant-corona/3_msstats_workflow_3_submit.md
- Comparison Workflow:
- Compare MSstats Result : quant-corona/4_msstats_comparison.md
- MassIVE API: api.md
theme:
name: windmill
extra:
analytics:
provider: google
property: UA-8412213-5