yahs_scaffolding_hap2.pbs

#!/bin/bash
#PBS -q bigmem
#PBS -l select=1:ncpus=64:mem=500GB
#PBS -l walltime=168:00:00
#PBS -W group_list=x-ccast-prj-hulke
#PBS -N TrioScaffoldingFunHap1


cd /mmfs1/projects/brent.hulke/MutagenesisSmart/HudsonAlpha/HifiParentalIlluminaOmniCAssembly/yahs_scaffolding_trio  

/mmfs1/projects/brent.hulke/MutagenesisSmart/HudsonAlpha/HifiOmniCAssembly/yahs_scaffolding/yahs/yahs Sunflower_1_Hetero_Red_trioBinning.asm.dip.hap2.p_ctg.fasta \
                                                                                                      mapped_trio_hap2.PT.bam