gfastats_hifi_parental_gfa.pbs

#!/bin/bash
#PBS -q default
#PBS -l select=1:ncpus=32:mem=128GB
#PBS -l walltime=168:00:00
#PBS -W group_list=x-ccast-prj-hulke
#PBS -N gfastats

cd /mmfs1/projects/brent.hulke/MutagenesisSmart/HudsonAlpha/HifiParentalIlluminaOmniCAssembly

/mmfs1/projects/brent.hulke/MutagenesisSmart/HudsonAlpha/gfastats/build/bin/gfastats /mmfs1/projects/brent.hulke/MutagenesisSmart/HudsonAlpha/HifiParentalIlluminaOmniCAssembly/hifiasmTrioBinning/Sunflower_1_Hetero_Red_trioBinning.asm.dip.hap1.p_ctg.gfa --threads 16 -o ./Sunflower_1_Hetero_Red_trioBinning.asm.dip.hap1.p_ctg.fasta --discover-paths &

/mmfs1/projects/brent.hulke/MutagenesisSmart/HudsonAlpha/gfastats/build/bin/gfastats /mmfs1/projects/brent.hulke/MutagenesisSmart/HudsonAlpha/HifiParentalIlluminaOmniCAssembly/hifiasmTrioBinning/Sunflower_1_Hetero_Red_trioBinning.asm.dip.hap2.p_ctg.gfa --threads 16 -o ./Sunflower_1_Hetero_Red_trioBinning.asm.dip.hap2.p_ctg.fasta --discover-paths