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pyproject.toml
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pyproject.toml
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[build-system]
build-backend = "hatchling.build"
requires = ["hatchling", "hatch-vcs"]
[project]
name = "spatialdata-io"
dynamic= [
"version" # allow version to be set by git tags
]
description = "SpatialData IO for common techs"
readme = "README.md"
requires-python = ">=3.9"
license = {file = "LICENSE"}
authors = [
{name = "scverse"},
]
maintainers = [
{name = "scverse", email = "[email protected]"},
]
urls.Documentation = "https://spatialdata-io.readthedocs.io/"
urls.Source = "https://github.com/scverse/spatialdata-io"
urls.Home-page = "https://github.com/scverse/spatialdata-io"
dependencies = [
"anndata",
"numpy",
"scanpy",
"spatialdata",
"scikit-image",
"h5py",
"joblib",
"imagecodecs",
"dask-image",
"pyarrow",
"readfcs",
]
[project.optional-dependencies]
dev = [
# CLI for bumping the version number
"bump2version",
"pre-commit"
]
doc = [
"sphinx>=4.5",
"sphinx-book-theme>=1.0.0",
"myst-nb",
"sphinxcontrib-bibtex>=1.0.0",
"sphinx-autodoc-typehints",
"sphinx-design",
# For notebooks
"ipython>=8.6.0",
"sphinx-copybutton",
]
test = [
"pytest",
"pytest-cov",
]
# this will be used by readthedocs and will make pip also look for pre-releases, generally installing the latest available version
pre = [
"spatialdata>=0.1.0-pre0"
]
[tool.coverage.run]
source = ["spatialdata_io"]
omit = [
"**/test_*.py",
]
[tool.pytest.ini_options]
testpaths = ["tests"]
xfail_strict = true
addopts = [
"--import-mode=importlib", # allow using test files with same name
]
[tool.isort]
include_trailing_comma = true
multi_line_output = 3
profile = "black"
skip_glob = ["docs/*"]
[tool.black]
line-length = 120
target-version = ['py39']
include = '\.pyi?$'
exclude = '''
(
/(
\.eggs
| \.git
| \.hg
| \.mypy_cache
| \.tox
| \.venv
| _build
| buck-out
| build
| dist
)/
)
'''
[tool.jupytext]
formats = "ipynb,md"
[tool.hatch.metadata]
allow-direct-references = true
[tool.hatch.build.targets.wheel]
packages = ['src/spatialdata_io']
[tool.hatch.version]
source = "vcs"
[tool.hatch.build.hooks.vcs]
version-file = "_version.py"