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working on tables
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michbur committed Jul 17, 2024
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20 changes: 7 additions & 13 deletions vignettes/simulation_description.Rmd
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Expand Up @@ -23,20 +23,14 @@ knitr::opts_chunk$set(

We generate $n$ sequences $s_1, \ldots, s_n$ of length $N$ based on real frequences of amino acids on full alphabet.

\begin{table}[!h]
\centering
\begin{tabular}{cccccccccc}
\texttt{A} & \texttt{L} & \texttt{A} & \texttt{V} & \texttt{P} & \texttt{H} & \texttt{G} & \texttt{K} & \texttt{T} & \texttt{F} \\
\texttt{S} & \texttt{L} & \texttt{Q} & \texttt{W} & \texttt{E} & \texttt{P} & \texttt{V} & \texttt{L} & \texttt{D} & \texttt{T} \\
\texttt{R} & \texttt{I} & \texttt{F} & \texttt{N} & \texttt{N} & \texttt{V} & \texttt{Q} & \texttt{G} & \texttt{A} & \texttt{A} \\
\texttt{G} & \texttt{C} & \texttt{S} & \texttt{D} & \texttt{G} & \texttt{Y} & \texttt{D} & \texttt{Q} & \texttt{T} & \texttt{R} \\
\texttt{Y} & \texttt{L} & \texttt{R} & \texttt{R} & \texttt{S} & \texttt{R} & \texttt{P} & \texttt{D} & \texttt{A} & \texttt{V} \\
\texttt{N} & \texttt{V} & \texttt{S} & \texttt{M} & \texttt{M} & \texttt{T} & \texttt{R} & \texttt{G} & \texttt{D} & \texttt{I} \\
| exttt{A} | \texttt{L} | \texttt{A} | \texttt{V} | \texttt{P} | \texttt{H} | \texttt{G} | \texttt{K} | \texttt{T} | \texttt{F} |
|------------|------------|------------|------------|------------|------------|------------|------------|------------|------------|
| \texttt{S} | \texttt{L} | \texttt{Q} | \texttt{W} | \texttt{E} | \texttt{P} | \texttt{V} | \texttt{L} | \texttt{D} | \texttt{T} |
| \texttt{R} | \texttt{I} | \texttt{F} | \texttt{N} | \texttt{N} | \texttt{V} | \texttt{Q} | \texttt{G} | \texttt{A} | \texttt{A} |
| \texttt{G} | \texttt{C} | \texttt{S} | \texttt{D} | \texttt{G} | \texttt{Y} | \texttt{D} | \texttt{Q} | \texttt{T} | \texttt{R} |
| \texttt{Y} | \texttt{L} | \texttt{R} | \texttt{R} | \texttt{S} | \texttt{R} | \texttt{P} | \texttt{D} | \texttt{A} | \texttt{V} |
| \texttt{N} | \texttt{V} | \texttt{S} | \texttt{M} | \texttt{M} | \texttt{T} | \texttt{R} | \texttt{G} | \texttt{D} | \texttt{I} |

\end{tabular}
\caption{Example sequences of length 10}
\label{tab:my_label}
\end{table}

\section{Motif generation}

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