From 0c8248fda5d180682b6547de37311c710342e7da Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Wed, 13 Nov 2024 08:26:15 +0000 Subject: [PATCH] Update data source versions --- result.json | 2 +- result.min.json | 2 +- update-log.txt | 6 +++--- 3 files changed, 5 insertions(+), 5 deletions(-) diff --git a/result.json b/result.json index 700013e..349a63f 100644 --- a/result.json +++ b/result.json @@ -20,7 +20,7 @@ "Medicines_output_herbal_medicines.xlsx": "https://www.ema.europa.eu/sites/default/files/Medicines_output_herbal_medicines.xlsx" }, "latest": true, - "version": "2024.11.12" + "version": "2024.11.13" } ], "GWASCatalog": [ diff --git a/result.min.json b/result.min.json index 40e85ac..4a015bd 100644 --- a/result.min.json +++ b/result.min.json @@ -1 +1 @@ -{"AACT": [], "CanadianNutrientFile": [{"version": "2016.06.03", "files": {"cnf-fcen-csv.zip": "https://www.canada.ca/content/dam/hc-sc/migration/hc-sc/fn-an/alt_formats/zip/nutrition/fiche-nutri-data/cnf-fcen-csv.zip"}, "latest": true}], "CancerDrugsDB": [], "DGIdb": [], "DrugBank": [], "DrugCentral": [], "EMA": [{"version": "2024.11.12", "files": {"Medicines_output_european_public_assessment_reports.xlsx": "https://www.ema.europa.eu/sites/default/files/Medicines_output_european_public_assessment_reports.xlsx", "Medicines_output_herbal_medicines.xlsx": "https://www.ema.europa.eu/sites/default/files/Medicines_output_herbal_medicines.xlsx"}, "latest": true}], "Gene2Phenotype": [{"version": "2024.10.17", "files": {"CancerG2P.csv.gz": "https://www.ebi.ac.uk/gene2phenotype/downloads/CancerG2P.csv.gz", "DDG2P.csv.gz": "https://www.ebi.ac.uk/gene2phenotype/downloads/DDG2P.csv.gz", "EyeG2P.csv.gz": "https://www.ebi.ac.uk/gene2phenotype/downloads/EyeG2P.csv.gz", "SkinG2P.csv.gz": "https://www.ebi.ac.uk/gene2phenotype/downloads/SkinG2P.csv.gz"}, "latest": true}], "GeneOntology": [{"version": "2024.11.03", "files": {"go.obo": "http://current.geneontology.org/ontology/go.obo", "goa_human.gaf.gz": "http://current.geneontology.org/annotations/goa_human.gaf.gz", "goa_human_complex.gaf.gz": "http://current.geneontology.org/annotations/goa_human_complex.gaf.gz", "goa_human_isoform.gaf.gz": "http://current.geneontology.org/annotations/goa_human_isoform.gaf.gz", "goa_human_rna.gaf.gz": "http://current.geneontology.org/annotations/goa_human_rna.gaf.gz"}, "latest": true}], "GWASCatalog": [{"version": "2024.11.03", "files": {"gwas_catalog_associations.tsv": "https://www.ebi.ac.uk/gwas/api/search/downloads/alternative", "gwas_catalog_studies.tsv": "https://www.ebi.ac.uk/gwas/api/search/downloads/studies_alternative", "gwas_catalog_ancestry.tsv": "https://www.ebi.ac.uk/gwas/api/search/downloads/ancestry"}, "latest": true}], "HGNC": [], "HPO": [{"version": "2024.08.13", "files": {"hp.obo": "https://raw.githubusercontent.com/obophenotype/human-phenotype-ontology/master/hp.obo", "phenotype.hpoa": "http://purl.obolibrary.org/obo/hp/hpoa/phenotype.hpoa", "genes_to_phenotype.txt": "http://purl.obolibrary.org/obo/hp/hpoa/genes_to_phenotype.txt", "phenotype_to_genes.txt": "http://purl.obolibrary.org/obo/hp/hpoa/phenotype_to_genes.txt"}, "latest": true}], "ITIS": [], "KEGG": [{"version": "2023.09.25", "files": {"dgroup": "ftp://ftp.genome.jp/pub/kegg/medicus/dgroup/dgroup", "drug": "ftp://ftp.genome.jp/pub/kegg/medicus/drug/drug", "disease": "ftp://ftp.genome.jp/pub/kegg/medicus/disease/disease", "network": "ftp://ftp.genome.jp/pub/kegg/medicus/network/network", "variant": "ftp://ftp.genome.jp/pub/kegg/medicus/network/variant", "human_genes_list.tsv": "http://rest.kegg.jp/list/hsa", "compounds_list.tsv": "http://rest.kegg.jp/list/compound", "organisms_list.tsv": "http://rest.kegg.jp/list/organism"}, "latest": true}], "MED-RT": [], "Mondo": [{"version": "2024.11.05", "files": {"mondo.obo": "http://purl.obolibrary.org/obo/mondo.obo"}, "latest": true}], "NDF-RT": [], "OpenTargets": [], "PathwayCommons": [], "PharmGKB": [{"version": "2024.11.05", "files": {"genes.zip": "https://s3.pgkb.org/data/genes.zip", "drugs.zip": "https://s3.pgkb.org/data/drugs.zip", "chemicals.zip": "https://s3.pgkb.org/data/chemicals.zip", "variants.zip": "https://s3.pgkb.org/data/variants.zip", "phenotypes.zip": "https://s3.pgkb.org/data/phenotypes.zip", "clinicalAnnotations.zip": "https://s3.pgkb.org/data/clinicalAnnotations.zip", "variantAnnotations.zip": "https://s3.pgkb.org/data/variantAnnotations.zip", "relationships.zip": "https://s3.pgkb.org/data/relationships.zip", "dosingGuidelines.json.zip": "https://s3.pgkb.org/data/dosingGuidelines.json.zip", "drugLabels.zip": "https://s3.pgkb.org/data/drugLabels.zip", "pathways-tsv.zip": "https://s3.pgkb.org/data/pathways-tsv.zip", "clinicalVariants.zip": "https://s3.pgkb.org/data/clinicalVariants.zip", "occurrences.zip": "https://s3.pgkb.org/data/occurrences.zip", "automated_annotations.zip": "https://s3.pgkb.org/data/automated_annotations.zip"}, "latest": true}], "ReDO-DB": [{"version": "24.10.02", "files": {"redo_db.txt": "https://acfdata.coworks.be/redo_db.txt"}, "latest": true}], "ReDOTrialsDB": [{"version": "2024.08.14", "files": {"ReDO_Trials_DB.txt": "https://acfdata.coworks.be/ReDO_Trials_DB.txt"}, "latest": true}], "Sider": [], "UNII": [], "UniProt": [{"version": "2024.10.02", "files": {"uniprot_sprot_human.xml.gz": "https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/taxonomic_divisions/uniprot_sprot_human.xml.gz"}, "latest": true}], "USDA-PLANTS": [{"version": null, "files": {"plantlst.txt": "https://plants.sc.egov.usda.gov/assets/docs/CompletePLANTSList/plantlst.txt"}, "latest": true}]} \ No newline at end of file +{"AACT": [], "CanadianNutrientFile": [{"version": "2016.06.03", "files": {"cnf-fcen-csv.zip": "https://www.canada.ca/content/dam/hc-sc/migration/hc-sc/fn-an/alt_formats/zip/nutrition/fiche-nutri-data/cnf-fcen-csv.zip"}, "latest": true}], "CancerDrugsDB": [], "DGIdb": [], "DrugBank": [], "DrugCentral": [], "EMA": [{"version": "2024.11.13", "files": {"Medicines_output_european_public_assessment_reports.xlsx": "https://www.ema.europa.eu/sites/default/files/Medicines_output_european_public_assessment_reports.xlsx", "Medicines_output_herbal_medicines.xlsx": "https://www.ema.europa.eu/sites/default/files/Medicines_output_herbal_medicines.xlsx"}, "latest": true}], "Gene2Phenotype": [{"version": "2024.10.17", "files": {"CancerG2P.csv.gz": "https://www.ebi.ac.uk/gene2phenotype/downloads/CancerG2P.csv.gz", "DDG2P.csv.gz": "https://www.ebi.ac.uk/gene2phenotype/downloads/DDG2P.csv.gz", "EyeG2P.csv.gz": "https://www.ebi.ac.uk/gene2phenotype/downloads/EyeG2P.csv.gz", "SkinG2P.csv.gz": "https://www.ebi.ac.uk/gene2phenotype/downloads/SkinG2P.csv.gz"}, "latest": true}], "GeneOntology": [{"version": "2024.11.03", "files": {"go.obo": "http://current.geneontology.org/ontology/go.obo", "goa_human.gaf.gz": "http://current.geneontology.org/annotations/goa_human.gaf.gz", "goa_human_complex.gaf.gz": "http://current.geneontology.org/annotations/goa_human_complex.gaf.gz", "goa_human_isoform.gaf.gz": "http://current.geneontology.org/annotations/goa_human_isoform.gaf.gz", "goa_human_rna.gaf.gz": "http://current.geneontology.org/annotations/goa_human_rna.gaf.gz"}, "latest": true}], "GWASCatalog": [{"version": "2024.11.03", "files": {"gwas_catalog_associations.tsv": "https://www.ebi.ac.uk/gwas/api/search/downloads/alternative", "gwas_catalog_studies.tsv": "https://www.ebi.ac.uk/gwas/api/search/downloads/studies_alternative", "gwas_catalog_ancestry.tsv": "https://www.ebi.ac.uk/gwas/api/search/downloads/ancestry"}, "latest": true}], "HGNC": [], "HPO": [{"version": "2024.08.13", "files": {"hp.obo": "https://raw.githubusercontent.com/obophenotype/human-phenotype-ontology/master/hp.obo", "phenotype.hpoa": "http://purl.obolibrary.org/obo/hp/hpoa/phenotype.hpoa", "genes_to_phenotype.txt": "http://purl.obolibrary.org/obo/hp/hpoa/genes_to_phenotype.txt", "phenotype_to_genes.txt": "http://purl.obolibrary.org/obo/hp/hpoa/phenotype_to_genes.txt"}, "latest": true}], "ITIS": [], "KEGG": [{"version": "2023.09.25", "files": {"dgroup": "ftp://ftp.genome.jp/pub/kegg/medicus/dgroup/dgroup", "drug": "ftp://ftp.genome.jp/pub/kegg/medicus/drug/drug", "disease": "ftp://ftp.genome.jp/pub/kegg/medicus/disease/disease", "network": "ftp://ftp.genome.jp/pub/kegg/medicus/network/network", "variant": "ftp://ftp.genome.jp/pub/kegg/medicus/network/variant", "human_genes_list.tsv": "http://rest.kegg.jp/list/hsa", "compounds_list.tsv": "http://rest.kegg.jp/list/compound", "organisms_list.tsv": "http://rest.kegg.jp/list/organism"}, "latest": true}], "MED-RT": [], "Mondo": [{"version": "2024.11.05", "files": {"mondo.obo": "http://purl.obolibrary.org/obo/mondo.obo"}, "latest": true}], "NDF-RT": [], "OpenTargets": [], "PathwayCommons": [], "PharmGKB": [{"version": "2024.11.05", "files": {"genes.zip": "https://s3.pgkb.org/data/genes.zip", "drugs.zip": "https://s3.pgkb.org/data/drugs.zip", "chemicals.zip": "https://s3.pgkb.org/data/chemicals.zip", "variants.zip": "https://s3.pgkb.org/data/variants.zip", "phenotypes.zip": "https://s3.pgkb.org/data/phenotypes.zip", "clinicalAnnotations.zip": "https://s3.pgkb.org/data/clinicalAnnotations.zip", "variantAnnotations.zip": "https://s3.pgkb.org/data/variantAnnotations.zip", "relationships.zip": "https://s3.pgkb.org/data/relationships.zip", "dosingGuidelines.json.zip": "https://s3.pgkb.org/data/dosingGuidelines.json.zip", "drugLabels.zip": "https://s3.pgkb.org/data/drugLabels.zip", "pathways-tsv.zip": "https://s3.pgkb.org/data/pathways-tsv.zip", "clinicalVariants.zip": "https://s3.pgkb.org/data/clinicalVariants.zip", "occurrences.zip": "https://s3.pgkb.org/data/occurrences.zip", "automated_annotations.zip": "https://s3.pgkb.org/data/automated_annotations.zip"}, "latest": true}], "ReDO-DB": [{"version": "24.10.02", "files": {"redo_db.txt": "https://acfdata.coworks.be/redo_db.txt"}, "latest": true}], "ReDOTrialsDB": [{"version": "2024.08.14", "files": {"ReDO_Trials_DB.txt": "https://acfdata.coworks.be/ReDO_Trials_DB.txt"}, "latest": true}], "Sider": [], "UNII": [], "UniProt": [{"version": "2024.10.02", "files": {"uniprot_sprot_human.xml.gz": "https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/taxonomic_divisions/uniprot_sprot_human.xml.gz"}, "latest": true}], "USDA-PLANTS": [{"version": null, "files": {"plantlst.txt": "https://plants.sc.egov.usda.gov/assets/docs/CompletePLANTSList/plantlst.txt"}, "latest": true}]} \ No newline at end of file diff --git a/update-log.txt b/update-log.txt index f16651e..9cdc214 100644 --- a/update-log.txt +++ b/update-log.txt @@ -1,4 +1,4 @@ -Updating data sources at 2024-11-12T08:23:30.964494 +Updating data sources at 2024-11-13T08:23:47.466565 Failed to retrieve data source "AACT" status list index out of range Retrieved 1 versions for data source "CanadianNutrientFile" Failed to retrieve data source "CancerDrugsDB" status list index out of range @@ -9,7 +9,7 @@ Retrieved 1 versions for data source "EMA" Retrieved 1 versions for data source "Gene2Phenotype" Retrieved 1 versions for data source "GeneOntology" Retrieved 1 versions for data source "GWASCatalog" -Failed to retrieve data source "HGNC" status 550 Could not get file modification time. +Failed to retrieve data source "HGNC" status [Errno 111] Connection refused Retrieved 1 versions for data source "HPO" Failed to retrieve data source "ITIS" status list index out of range Retrieved 1 versions for data source "KEGG" @@ -22,6 +22,6 @@ Retrieved 1 versions for data source "PharmGKB" Retrieved 1 versions for data source "ReDO-DB" Retrieved 1 versions for data source "ReDOTrialsDB" Failed to retrieve data source "Sider" status [Errno 110] Connection timed out -Failed to retrieve data source "UNII" status HTTPSConnectionPool(host='fdasis.nlm.nih.gov', port=443): Max retries exceeded with url: /srs/jsp/srs/uniiListDownload.jsp (Caused by NameResolutionError(": Failed to resolve 'fdasis.nlm.nih.gov' ([Errno -2] Name or service not known)")) +Failed to retrieve data source "UNII" status HTTPSConnectionPool(host='fdasis.nlm.nih.gov', port=443): Max retries exceeded with url: /srs/jsp/srs/uniiListDownload.jsp (Caused by NameResolutionError(": Failed to resolve 'fdasis.nlm.nih.gov' ([Errno -2] Name or service not known)")) Retrieved 1 versions for data source "UniProt" Retrieved 1 versions for data source "USDA-PLANTS"