From 049680d778c3500cc8e8adbf907bbb5231fc6ba4 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Tue, 12 Nov 2024 08:25:58 +0000 Subject: [PATCH] Update data source versions --- result.json | 232 +----------------------------------------------- result.min.json | 2 +- update-log.txt | 6 +- 3 files changed, 7 insertions(+), 233 deletions(-) diff --git a/result.json b/result.json index c522e07..700013e 100644 --- a/result.json +++ b/result.json @@ -11,233 +11,7 @@ ], "CancerDrugsDB": [], "DGIdb": [], - "DrugBank": [ - { - "files": { - "drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-12/downloads/all-full-database", - "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-12/downloads/all-metabolite-structures", - "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-12/downloads/all-structures" - }, - "latest": false, - "version": "5.1.12" - }, - { - "files": { - "drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-11/downloads/all-full-database", - "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-11/downloads/all-metabolite-structures", - "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-11/downloads/all-structures" - }, - "latest": false, - "version": "5.1.11" - }, - { - "files": { - "drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-10/downloads/all-full-database", - "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-10/downloads/all-metabolite-structures", - "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-10/downloads/all-structures" - }, - "latest": false, - "version": "5.1.10" - }, - { - "files": { - "drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-9/downloads/all-full-database", - "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-9/downloads/all-metabolite-structures", - "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-9/downloads/all-structures" - }, - "latest": true, - "version": "5.1.9" - }, - { - "files": { - "drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-8/downloads/all-full-database", - "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-8/downloads/all-metabolite-structures", - "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-8/downloads/all-structures" - }, - "latest": false, - "version": "5.1.8" - }, - { - "files": { - "drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-7/downloads/all-full-database", - "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-7/downloads/all-metabolite-structures", - "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-7/downloads/all-structures" - }, - "latest": false, - "version": "5.1.7" - }, - { - "files": { - "drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-6/downloads/all-full-database", - "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-6/downloads/all-metabolite-structures", - "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-6/downloads/all-structures" - }, - "latest": false, - "version": "5.1.6" - }, - { - "files": { - "drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-5/downloads/all-full-database", - "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-5/downloads/all-metabolite-structures", - "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-5/downloads/all-structures" - }, - "latest": false, - "version": "5.1.5" - }, - { - "files": { - "drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-4/downloads/all-full-database", - "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-4/downloads/all-metabolite-structures", - "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-4/downloads/all-structures" - }, - "latest": false, - "version": "5.1.4" - }, - { - "files": { - "drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-3/downloads/all-full-database", - "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-3/downloads/all-metabolite-structures", - "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-3/downloads/all-structures" - }, - "latest": false, - "version": "5.1.3" - }, - { - "files": { - "drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-2/downloads/all-full-database", - "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-2/downloads/all-metabolite-structures", - "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-2/downloads/all-structures" - }, - "latest": false, - "version": "5.1.2" - }, - { - "files": { - "drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-1/downloads/all-full-database", - "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-1/downloads/all-metabolite-structures", - "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-1/downloads/all-structures" - }, - "latest": false, - "version": "5.1.1" - }, - { - "files": { - "drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-0/downloads/all-full-database", - "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-0/downloads/all-metabolite-structures", - "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-0/downloads/all-structures" - }, - "latest": false, - "version": "5.1.0" - }, - { - "files": { - "drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-0-11/downloads/all-full-database", - "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-0-11/downloads/all-metabolite-structures", - "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-0-11/downloads/all-structures" - }, - "latest": false, - "version": "5.0.11" - }, - { - "files": { - "drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-0-10/downloads/all-full-database", - "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-0-10/downloads/all-metabolite-structures", - "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-0-10/downloads/all-structures" - }, - "latest": false, - "version": "5.0.10" - }, - { - "files": { - "drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-0-9/downloads/all-full-database", - "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-0-9/downloads/all-metabolite-structures", - "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-0-9/downloads/all-structures" - }, - "latest": false, - "version": "5.0.9" - }, - { - "files": { - "drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-0-8/downloads/all-full-database", - "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-0-8/downloads/all-metabolite-structures", - "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-0-8/downloads/all-structures" - }, - "latest": false, - "version": "5.0.8" - }, - { - "files": { - "drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-0-7/downloads/all-full-database", - "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-0-7/downloads/all-metabolite-structures", - "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-0-7/downloads/all-structures" - }, - "latest": false, - "version": "5.0.7" - }, - { - "files": { - "drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-0-6/downloads/all-full-database", - "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-0-6/downloads/all-metabolite-structures", - "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-0-6/downloads/all-structures" - }, - "latest": false, - "version": "5.0.6" - }, - { - "files": { - "drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-0-5/downloads/all-full-database", - "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-0-5/downloads/all-metabolite-structures", - "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-0-5/downloads/all-structures" - }, - "latest": false, - "version": "5.0.5" - }, - { - "files": { - "drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-0-4/downloads/all-full-database", - "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-0-4/downloads/all-metabolite-structures", - "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-0-4/downloads/all-structures" - }, - "latest": false, - "version": "5.0.4" - }, - { - "files": { - "drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-0-3/downloads/all-full-database", - "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-0-3/downloads/all-metabolite-structures", - "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-0-3/downloads/all-structures" - }, - "latest": false, - "version": "5.0.3" - }, - { - "files": { - "drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-0-2/downloads/all-full-database", - "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-0-2/downloads/all-metabolite-structures", - "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-0-2/downloads/all-structures" - }, - "latest": false, - "version": "5.0.2" - }, - { - "files": { - "drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-0-1/downloads/all-full-database", - "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-0-1/downloads/all-metabolite-structures", - "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-0-1/downloads/all-structures" - }, - "latest": false, - "version": "5.0.1" - }, - { - "files": { - "drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-0-0/downloads/all-full-database", - "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-0-0/downloads/all-metabolite-structures", - "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-0-0/downloads/all-structures" - }, - "latest": false, - "version": "5.0.0" - } - ], + "DrugBank": [], "DrugCentral": [], "EMA": [ { @@ -246,7 +20,7 @@ "Medicines_output_herbal_medicines.xlsx": "https://www.ema.europa.eu/sites/default/files/Medicines_output_herbal_medicines.xlsx" }, "latest": true, - "version": "2024.11.11" + "version": "2024.11.12" } ], "GWASCatalog": [ @@ -282,7 +56,7 @@ "goa_human_rna.gaf.gz": "http://current.geneontology.org/annotations/goa_human_rna.gaf.gz" }, "latest": true, - "version": "2024.09.08" + "version": "2024.11.03" } ], "HGNC": [], diff --git a/result.min.json b/result.min.json index 031c172..40e85ac 100644 --- a/result.min.json +++ b/result.min.json @@ -1 +1 @@ -{"AACT": [], "CanadianNutrientFile": [{"version": "2016.06.03", "files": {"cnf-fcen-csv.zip": "https://www.canada.ca/content/dam/hc-sc/migration/hc-sc/fn-an/alt_formats/zip/nutrition/fiche-nutri-data/cnf-fcen-csv.zip"}, "latest": true}], "CancerDrugsDB": [], "DGIdb": [], "DrugBank": [{"version": "5.1.12", "files": {"drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-12/downloads/all-full-database", "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-12/downloads/all-structures", "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-12/downloads/all-metabolite-structures"}, "latest": false}, {"version": "5.1.11", "files": {"drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-11/downloads/all-full-database", "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-11/downloads/all-structures", "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-11/downloads/all-metabolite-structures"}, "latest": false}, {"version": "5.1.10", "files": {"drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-10/downloads/all-full-database", "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-10/downloads/all-structures", "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-10/downloads/all-metabolite-structures"}, "latest": false}, {"version": "5.1.9", "files": {"drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-9/downloads/all-full-database", "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-9/downloads/all-structures", "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-9/downloads/all-metabolite-structures"}, "latest": true}, {"version": "5.1.8", "files": {"drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-8/downloads/all-full-database", "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-8/downloads/all-structures", "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-8/downloads/all-metabolite-structures"}, "latest": false}, {"version": "5.1.7", "files": {"drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-7/downloads/all-full-database", "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-7/downloads/all-structures", "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-7/downloads/all-metabolite-structures"}, "latest": false}, {"version": "5.1.6", "files": {"drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-6/downloads/all-full-database", "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-6/downloads/all-structures", "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-6/downloads/all-metabolite-structures"}, "latest": false}, {"version": "5.1.5", "files": {"drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-5/downloads/all-full-database", "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-5/downloads/all-structures", "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-5/downloads/all-metabolite-structures"}, "latest": false}, {"version": "5.1.4", "files": {"drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-4/downloads/all-full-database", "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-4/downloads/all-structures", "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-4/downloads/all-metabolite-structures"}, "latest": false}, {"version": "5.1.3", "files": {"drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-3/downloads/all-full-database", "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-3/downloads/all-structures", "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-3/downloads/all-metabolite-structures"}, "latest": false}, {"version": "5.1.2", "files": {"drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-2/downloads/all-full-database", "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-2/downloads/all-structures", "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-2/downloads/all-metabolite-structures"}, "latest": false}, {"version": "5.1.1", "files": {"drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-1/downloads/all-full-database", "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-1/downloads/all-structures", "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-1/downloads/all-metabolite-structures"}, "latest": false}, {"version": "5.1.0", "files": {"drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-1-0/downloads/all-full-database", "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-1-0/downloads/all-structures", "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-1-0/downloads/all-metabolite-structures"}, "latest": false}, {"version": "5.0.11", "files": {"drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-0-11/downloads/all-full-database", "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-0-11/downloads/all-structures", "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-0-11/downloads/all-metabolite-structures"}, "latest": false}, {"version": "5.0.10", "files": {"drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-0-10/downloads/all-full-database", "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-0-10/downloads/all-structures", "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-0-10/downloads/all-metabolite-structures"}, "latest": false}, {"version": "5.0.9", "files": {"drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-0-9/downloads/all-full-database", "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-0-9/downloads/all-structures", "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-0-9/downloads/all-metabolite-structures"}, "latest": false}, {"version": "5.0.8", "files": {"drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-0-8/downloads/all-full-database", "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-0-8/downloads/all-structures", "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-0-8/downloads/all-metabolite-structures"}, "latest": false}, {"version": "5.0.7", "files": {"drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-0-7/downloads/all-full-database", "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-0-7/downloads/all-structures", "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-0-7/downloads/all-metabolite-structures"}, "latest": false}, {"version": "5.0.6", "files": {"drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-0-6/downloads/all-full-database", "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-0-6/downloads/all-structures", "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-0-6/downloads/all-metabolite-structures"}, "latest": false}, {"version": "5.0.5", "files": {"drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-0-5/downloads/all-full-database", "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-0-5/downloads/all-structures", "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-0-5/downloads/all-metabolite-structures"}, "latest": false}, {"version": "5.0.4", "files": {"drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-0-4/downloads/all-full-database", "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-0-4/downloads/all-structures", "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-0-4/downloads/all-metabolite-structures"}, "latest": false}, {"version": "5.0.3", "files": {"drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-0-3/downloads/all-full-database", "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-0-3/downloads/all-structures", "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-0-3/downloads/all-metabolite-structures"}, "latest": false}, {"version": "5.0.2", "files": {"drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-0-2/downloads/all-full-database", "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-0-2/downloads/all-structures", "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-0-2/downloads/all-metabolite-structures"}, "latest": false}, {"version": "5.0.1", "files": {"drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-0-1/downloads/all-full-database", "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-0-1/downloads/all-structures", "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-0-1/downloads/all-metabolite-structures"}, "latest": false}, {"version": "5.0.0", "files": {"drugbank_all_full_database.xml.zip": "https://go.drugbank.com/releases/5-0-0/downloads/all-full-database", "drugbank_all_structures.sdf.zip": "https://go.drugbank.com/releases/5-0-0/downloads/all-structures", "drugbank_all_metabolite-structures.sdf.zip": "https://go.drugbank.com/releases/5-0-0/downloads/all-metabolite-structures"}, "latest": false}], "DrugCentral": [], "EMA": [{"version": "2024.11.11", "files": {"Medicines_output_european_public_assessment_reports.xlsx": "https://www.ema.europa.eu/sites/default/files/Medicines_output_european_public_assessment_reports.xlsx", "Medicines_output_herbal_medicines.xlsx": "https://www.ema.europa.eu/sites/default/files/Medicines_output_herbal_medicines.xlsx"}, "latest": true}], "Gene2Phenotype": [{"version": "2024.10.17", "files": {"CancerG2P.csv.gz": "https://www.ebi.ac.uk/gene2phenotype/downloads/CancerG2P.csv.gz", "DDG2P.csv.gz": "https://www.ebi.ac.uk/gene2phenotype/downloads/DDG2P.csv.gz", "EyeG2P.csv.gz": "https://www.ebi.ac.uk/gene2phenotype/downloads/EyeG2P.csv.gz", "SkinG2P.csv.gz": "https://www.ebi.ac.uk/gene2phenotype/downloads/SkinG2P.csv.gz"}, "latest": true}], "GeneOntology": [{"version": "2024.09.08", "files": {"go.obo": "http://current.geneontology.org/ontology/go.obo", "goa_human.gaf.gz": "http://current.geneontology.org/annotations/goa_human.gaf.gz", "goa_human_complex.gaf.gz": "http://current.geneontology.org/annotations/goa_human_complex.gaf.gz", "goa_human_isoform.gaf.gz": "http://current.geneontology.org/annotations/goa_human_isoform.gaf.gz", "goa_human_rna.gaf.gz": "http://current.geneontology.org/annotations/goa_human_rna.gaf.gz"}, "latest": true}], "GWASCatalog": [{"version": "2024.11.03", "files": {"gwas_catalog_associations.tsv": "https://www.ebi.ac.uk/gwas/api/search/downloads/alternative", "gwas_catalog_studies.tsv": "https://www.ebi.ac.uk/gwas/api/search/downloads/studies_alternative", "gwas_catalog_ancestry.tsv": "https://www.ebi.ac.uk/gwas/api/search/downloads/ancestry"}, "latest": true}], "HGNC": [], "HPO": [{"version": "2024.08.13", "files": {"hp.obo": "https://raw.githubusercontent.com/obophenotype/human-phenotype-ontology/master/hp.obo", "phenotype.hpoa": "http://purl.obolibrary.org/obo/hp/hpoa/phenotype.hpoa", "genes_to_phenotype.txt": "http://purl.obolibrary.org/obo/hp/hpoa/genes_to_phenotype.txt", "phenotype_to_genes.txt": "http://purl.obolibrary.org/obo/hp/hpoa/phenotype_to_genes.txt"}, "latest": true}], "ITIS": [], "KEGG": [{"version": "2023.09.25", "files": {"dgroup": "ftp://ftp.genome.jp/pub/kegg/medicus/dgroup/dgroup", "drug": "ftp://ftp.genome.jp/pub/kegg/medicus/drug/drug", "disease": "ftp://ftp.genome.jp/pub/kegg/medicus/disease/disease", "network": "ftp://ftp.genome.jp/pub/kegg/medicus/network/network", "variant": "ftp://ftp.genome.jp/pub/kegg/medicus/network/variant", "human_genes_list.tsv": "http://rest.kegg.jp/list/hsa", "compounds_list.tsv": "http://rest.kegg.jp/list/compound", "organisms_list.tsv": "http://rest.kegg.jp/list/organism"}, "latest": true}], "MED-RT": [], "Mondo": [{"version": "2024.11.05", "files": {"mondo.obo": "http://purl.obolibrary.org/obo/mondo.obo"}, "latest": true}], "NDF-RT": [], "OpenTargets": [], "PathwayCommons": [], "PharmGKB": [{"version": "2024.11.05", "files": {"genes.zip": "https://s3.pgkb.org/data/genes.zip", "drugs.zip": "https://s3.pgkb.org/data/drugs.zip", "chemicals.zip": "https://s3.pgkb.org/data/chemicals.zip", "variants.zip": "https://s3.pgkb.org/data/variants.zip", "phenotypes.zip": "https://s3.pgkb.org/data/phenotypes.zip", "clinicalAnnotations.zip": "https://s3.pgkb.org/data/clinicalAnnotations.zip", "variantAnnotations.zip": "https://s3.pgkb.org/data/variantAnnotations.zip", "relationships.zip": "https://s3.pgkb.org/data/relationships.zip", "dosingGuidelines.json.zip": "https://s3.pgkb.org/data/dosingGuidelines.json.zip", "drugLabels.zip": "https://s3.pgkb.org/data/drugLabels.zip", "pathways-tsv.zip": "https://s3.pgkb.org/data/pathways-tsv.zip", "clinicalVariants.zip": "https://s3.pgkb.org/data/clinicalVariants.zip", "occurrences.zip": "https://s3.pgkb.org/data/occurrences.zip", "automated_annotations.zip": "https://s3.pgkb.org/data/automated_annotations.zip"}, "latest": true}], "ReDO-DB": [{"version": "24.10.02", "files": {"redo_db.txt": "https://acfdata.coworks.be/redo_db.txt"}, "latest": true}], "ReDOTrialsDB": [{"version": "2024.08.14", "files": {"ReDO_Trials_DB.txt": "https://acfdata.coworks.be/ReDO_Trials_DB.txt"}, "latest": true}], "Sider": [], "UNII": [], "UniProt": [{"version": "2024.10.02", "files": {"uniprot_sprot_human.xml.gz": "https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/taxonomic_divisions/uniprot_sprot_human.xml.gz"}, "latest": true}], "USDA-PLANTS": [{"version": null, "files": {"plantlst.txt": "https://plants.sc.egov.usda.gov/assets/docs/CompletePLANTSList/plantlst.txt"}, "latest": true}]} \ No newline at end of file +{"AACT": [], "CanadianNutrientFile": [{"version": "2016.06.03", "files": {"cnf-fcen-csv.zip": "https://www.canada.ca/content/dam/hc-sc/migration/hc-sc/fn-an/alt_formats/zip/nutrition/fiche-nutri-data/cnf-fcen-csv.zip"}, "latest": true}], "CancerDrugsDB": [], "DGIdb": [], "DrugBank": [], "DrugCentral": [], "EMA": [{"version": "2024.11.12", "files": {"Medicines_output_european_public_assessment_reports.xlsx": "https://www.ema.europa.eu/sites/default/files/Medicines_output_european_public_assessment_reports.xlsx", "Medicines_output_herbal_medicines.xlsx": "https://www.ema.europa.eu/sites/default/files/Medicines_output_herbal_medicines.xlsx"}, "latest": true}], "Gene2Phenotype": [{"version": "2024.10.17", "files": {"CancerG2P.csv.gz": "https://www.ebi.ac.uk/gene2phenotype/downloads/CancerG2P.csv.gz", "DDG2P.csv.gz": "https://www.ebi.ac.uk/gene2phenotype/downloads/DDG2P.csv.gz", "EyeG2P.csv.gz": "https://www.ebi.ac.uk/gene2phenotype/downloads/EyeG2P.csv.gz", "SkinG2P.csv.gz": "https://www.ebi.ac.uk/gene2phenotype/downloads/SkinG2P.csv.gz"}, "latest": true}], "GeneOntology": [{"version": "2024.11.03", "files": {"go.obo": "http://current.geneontology.org/ontology/go.obo", "goa_human.gaf.gz": "http://current.geneontology.org/annotations/goa_human.gaf.gz", "goa_human_complex.gaf.gz": "http://current.geneontology.org/annotations/goa_human_complex.gaf.gz", "goa_human_isoform.gaf.gz": "http://current.geneontology.org/annotations/goa_human_isoform.gaf.gz", "goa_human_rna.gaf.gz": "http://current.geneontology.org/annotations/goa_human_rna.gaf.gz"}, "latest": true}], "GWASCatalog": [{"version": "2024.11.03", "files": {"gwas_catalog_associations.tsv": "https://www.ebi.ac.uk/gwas/api/search/downloads/alternative", "gwas_catalog_studies.tsv": "https://www.ebi.ac.uk/gwas/api/search/downloads/studies_alternative", "gwas_catalog_ancestry.tsv": "https://www.ebi.ac.uk/gwas/api/search/downloads/ancestry"}, "latest": true}], "HGNC": [], "HPO": [{"version": "2024.08.13", "files": {"hp.obo": "https://raw.githubusercontent.com/obophenotype/human-phenotype-ontology/master/hp.obo", "phenotype.hpoa": "http://purl.obolibrary.org/obo/hp/hpoa/phenotype.hpoa", "genes_to_phenotype.txt": "http://purl.obolibrary.org/obo/hp/hpoa/genes_to_phenotype.txt", "phenotype_to_genes.txt": "http://purl.obolibrary.org/obo/hp/hpoa/phenotype_to_genes.txt"}, "latest": true}], "ITIS": [], "KEGG": [{"version": "2023.09.25", "files": {"dgroup": "ftp://ftp.genome.jp/pub/kegg/medicus/dgroup/dgroup", "drug": "ftp://ftp.genome.jp/pub/kegg/medicus/drug/drug", "disease": "ftp://ftp.genome.jp/pub/kegg/medicus/disease/disease", "network": "ftp://ftp.genome.jp/pub/kegg/medicus/network/network", "variant": "ftp://ftp.genome.jp/pub/kegg/medicus/network/variant", "human_genes_list.tsv": "http://rest.kegg.jp/list/hsa", "compounds_list.tsv": "http://rest.kegg.jp/list/compound", "organisms_list.tsv": "http://rest.kegg.jp/list/organism"}, "latest": true}], "MED-RT": [], "Mondo": [{"version": "2024.11.05", "files": {"mondo.obo": "http://purl.obolibrary.org/obo/mondo.obo"}, "latest": true}], "NDF-RT": [], "OpenTargets": [], "PathwayCommons": [], "PharmGKB": [{"version": "2024.11.05", "files": {"genes.zip": "https://s3.pgkb.org/data/genes.zip", "drugs.zip": "https://s3.pgkb.org/data/drugs.zip", "chemicals.zip": "https://s3.pgkb.org/data/chemicals.zip", "variants.zip": "https://s3.pgkb.org/data/variants.zip", "phenotypes.zip": "https://s3.pgkb.org/data/phenotypes.zip", "clinicalAnnotations.zip": "https://s3.pgkb.org/data/clinicalAnnotations.zip", "variantAnnotations.zip": "https://s3.pgkb.org/data/variantAnnotations.zip", "relationships.zip": "https://s3.pgkb.org/data/relationships.zip", "dosingGuidelines.json.zip": "https://s3.pgkb.org/data/dosingGuidelines.json.zip", "drugLabels.zip": "https://s3.pgkb.org/data/drugLabels.zip", "pathways-tsv.zip": "https://s3.pgkb.org/data/pathways-tsv.zip", "clinicalVariants.zip": "https://s3.pgkb.org/data/clinicalVariants.zip", "occurrences.zip": "https://s3.pgkb.org/data/occurrences.zip", "automated_annotations.zip": "https://s3.pgkb.org/data/automated_annotations.zip"}, "latest": true}], "ReDO-DB": [{"version": "24.10.02", "files": {"redo_db.txt": "https://acfdata.coworks.be/redo_db.txt"}, "latest": true}], "ReDOTrialsDB": [{"version": "2024.08.14", "files": {"ReDO_Trials_DB.txt": "https://acfdata.coworks.be/ReDO_Trials_DB.txt"}, "latest": true}], "Sider": [], "UNII": [], "UniProt": [{"version": "2024.10.02", "files": {"uniprot_sprot_human.xml.gz": "https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/taxonomic_divisions/uniprot_sprot_human.xml.gz"}, "latest": true}], "USDA-PLANTS": [{"version": null, "files": {"plantlst.txt": "https://plants.sc.egov.usda.gov/assets/docs/CompletePLANTSList/plantlst.txt"}, "latest": true}]} \ No newline at end of file diff --git a/update-log.txt b/update-log.txt index 4c5a375..f16651e 100644 --- a/update-log.txt +++ b/update-log.txt @@ -1,9 +1,9 @@ -Updating data sources at 2024-11-11T08:23:54.770069 +Updating data sources at 2024-11-12T08:23:30.964494 Failed to retrieve data source "AACT" status list index out of range Retrieved 1 versions for data source "CanadianNutrientFile" Failed to retrieve data source "CancerDrugsDB" status list index out of range Retrieved 0 versions for data source "DGIdb" -Retrieved 25 versions for data source "DrugBank" +Failed to retrieve data source "DrugBank" status Expecting value: line 1 column 1 (char 0) Failed to retrieve data source "DrugCentral" status list index out of range Retrieved 1 versions for data source "EMA" Retrieved 1 versions for data source "Gene2Phenotype" @@ -22,6 +22,6 @@ Retrieved 1 versions for data source "PharmGKB" Retrieved 1 versions for data source "ReDO-DB" Retrieved 1 versions for data source "ReDOTrialsDB" Failed to retrieve data source "Sider" status [Errno 110] Connection timed out -Failed to retrieve data source "UNII" status HTTPSConnectionPool(host='fdasis.nlm.nih.gov', port=443): Max retries exceeded with url: /srs/jsp/srs/uniiListDownload.jsp (Caused by NameResolutionError(": Failed to resolve 'fdasis.nlm.nih.gov' ([Errno -2] Name or service not known)")) +Failed to retrieve data source "UNII" status HTTPSConnectionPool(host='fdasis.nlm.nih.gov', port=443): Max retries exceeded with url: /srs/jsp/srs/uniiListDownload.jsp (Caused by NameResolutionError(": Failed to resolve 'fdasis.nlm.nih.gov' ([Errno -2] Name or service not known)")) Retrieved 1 versions for data source "UniProt" Retrieved 1 versions for data source "USDA-PLANTS"