bioss-group.github.io

{:height="50%" width="50%"}

The interdisciplinary research group Biopolymers, Software, Simulations, Statistics (BiOSS) brings together staff from Institute of Theoretical and Applied Informatics, Polish Academy of Sciences (IITiS PAN), Bydgoszcz University of Science and Technology (PBŚ), Gdańsk University of Technology (PG) and Kazimierz Wielki University in Bydgoszcz (UKW).

The group's research focuses on advanced statistical analysis of the molecular dynamics of biopolymers that are important in the functioning of living organisms including humans (e.g., joint lubrication). In order to make the developed data analysis methods as universal as possible, we also conduct analysis of other data with similar characteristics (e.g., climate data).

members

• dr hab. Krzysztof Domino, PI - (IITiS PAN)
• prof. dr hab Adam Gadomski (PBŚ)
• dr inż. Natalia Kruszewska (PBŚ)
• dr Piotr Weber (PG)
• dr Monika Okoniewska (UKW)
• mgr inż. Piotr Sionkowski (IITiS PAN)
• dr inż. Piotr Bełdowski (PBŚ)

publications

1. P. Sionkowski, N. Kruszewska, A. Kreitschitz, S. N. Gorb, and K. Domino, "Application of Recurrence Plot Analysis to Examine Dynamics of Biological Molecules on the Example of Aggregation of Seed Mucilage Components", Entropy 2024, 26(5), 380

2. Weber, P., P. Bełdowski, A. Gadomski, K. Domino, P. Sionkowski, and D. Ledziński, "Statistical method for analysis of interactions between chosen protein and chondroitin sulfate in an aqueous environment", The 16th International Conference "Dynamical Systems – Theory and Applications" (DSTA 2021): Springer, Cham, Perspectives in Dynamical Systems II — Numerical and Analytical Approaches (DSTA 2021), 03/2024.

3. Bełdowski, P., P. Weber, A. Gadomski, P. Sionkowski, N. Kruszewska, and K. Domino, "Studies of the Interaction Dynamics in Albumin–Chondroitin Sulfate Systems by Recurrence Method", The 16th International Conference "Dynamical Systems – Theory and Applications" (DSTA 2021): Springer, Cham, Perspectives in Dynamical Systems II — Numerical and Analytical Approaches (DSTA 2021), 03/2024

4. P. Sionkowski, P. Bełdowski, N. Kruszewska, P. Weber, B. Marciniak, K. Domino, ”Effect of ion and binding site on the conformation of chosen glycosaminoglycans at the albumin surface”, Entropy 2022, 24, 811.

5. P. Bełdowski, K. Domino, D. Bełdowski, R. Dobosz, ”Analysis of protein intramolecular and solvent bonding on example of major sonovital fluid component”, A. Gadomski (eds) Water in Biomechanical and Related Systems. Biologically-Inspired Systems, vol. 17: Springer, Cham, pp. 93-105, 11/2019, 2021.

6. N. Kruszewska, K. Domino, P. Weber, ”Water Behavior Near the Lipid Bilayer”, A. Gadomski (eds) Water in Biomechanical and Related Systems. Biologically-Inspired Systems, vol. 17: Springer, Cham, pp. 107-130, 2021.

7. N. Kruszewska, K. Domino, R. Drelich, W. Urbaniak, A. D. Petelska, ”Interactions between Beta-2-Glycoprotein-1 and Phospholipid Bilayer-A Molecular Dynamic Study”, Membranes 2020, 10, 39.

8. P. Weber, P. Bełdowski, K. Domino, D. Ledziński, A. Gadomski, ”Changes of Conformation in Albumin with Temperature by Molecular Dynamics Simulations”, Entropy 2020, 22, 405.

9. P. Bełdowski, P. Weber, A. Dėdinaitė, P. M. Claesson, A. Gadomski, "Physical crosslinking of hyaluronic acid in the presence of phospholipids in an aqueous nano-environment", Soft Matter, 2018, 14(44), 8997-9004.

code

• K. Domino, P. Sionkowski, N. Kruszewska, polymer entropy

research grants

• ''Properties of generic quantum communication channels'', National Science Centre in Poland Sonata Bis project number 2016/22/E/ST6/00062
• National Science Centre in Poland Miniatura project number 019/03/X/ST3/01482

popular science

Kolana na rolkach bioinspiracją do walki z tarciem (24.01.2023)